Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_49

Orthogroup ID

OG0006818

Physical Location & Seq

Genomic Coordinates Forward (+)

131788 .. 133872

Gene Structure 2085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom49g00090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCAGAGGTTTTGACCAAAACCAGTCTGTTGTCGTCCTGGCATCATCATCAGTATCATCAAAACAATCAAAGCAGCATCTCCGTTTTCCCAAAGAGTTGTAATTACAATAAATCAAGGTCTTTCTCTTGCTCTCTCAAACTGAATCCGGAGATTTCATCACTATCGTTATCGACAAAGAGTGATTTTCACGGCAAAAAGATTGCTTTTCAAGCCACCAGCATCAGGAGTTCCCAACCCCACGCTTCTTCTGCCGTTAATTCCCATCAGTCTGGACTTCGGATTGGCAAAGCTCTGAAATGGTGGGAGAAGGGGGACCAGCCCAACATGAAAGGGGTGGCATCTGCGGAGGACCTAGTGGAATCCCTTTCAAATGCCGGGGATAAGCTGGTGGTCGTTGATTTCTTCTCTCCTGGCTGCGGTGGCTGCAAAGCTCTTCATCCCAAGATATGTCAGCTGGCAGAGATGAACCCAGATGTTCAATTCCTTCAGGTGAACTACGAGGAACACAAGTCCATGTGTTACAGTCTCAATGTTCATGTCCTGCCCTTCTTCCGCTTTTACAGAGGTGCTCATGGTCGCCTTTGCAGCTTCAGCTGCACCAACGCCACGATCAAGAAGTTTAGAGATGCATTAGCCAAGCACAAACCAGAGCGGTGCAGCCTTGGGCCAACAAAAGGGCTGGAGGAGAAAGAGCTCCTAGCTCTTGCTACCAACAAAGACCTCTCATTTACCTACACTCCTAAACCAACAGAAGATGTGCCTGCCAAGGAGGAAGTGATCGTGGCTGAAGAGGCACCATCTCGTCTTCCTCTTGCGTCGGCAACCTCAAAGTCTGCTCAAGTGGTCACTGCCTGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0016491 GO:0016667 GO:0016671 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

288

Amino Acids

31.73

Weight (kDa)

9.06

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08570 AT1G08570 AT1G08570 AT1G08570
fragaria_vesca	FvH4_1g27980 FvH4_1g27980 FvH4_1g27980 FvH4_1g27980
malus_domestica	MD12G1001500.v1.1 MD14G1001400.v1.1
prunus_persica	Prupe.7G001600_v2.0.a1 Prupe.7G001600_v2.0.a1
pyrus_communis	pycom12g00140 pycom49g00090
rosa_chinensis	RchiOBHm_Chr3g0497211
rosa_laevigata	RLG00000022470
rosa_multiflora	Rmu_sc0002893.1_g000001 Rmu_sc0029992.1_g000002
rosa_roxburghii	Rroxscaffold_6G00388260
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335200 Rh3BG373200 Rh3CG369300 Rh3DG370400
rosa_wichuraiana	Rw0G003520 Rw3G029470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	796
AccBSI	CCGCTC	1 cut(s)	655
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	4 cut(s)	347, 420, 556, 655
AcuI	CTGAAG	3 cut(s)	473, 577, 810
AfiI	CCNNNNNNNGG	3 cut(s)	225, 419, 677
AgsI	TTSAA	3 cut(s)	212, 372, 482
AjnI	CCWGG	3 cut(s)	38, 412, 854
AluBI	AGCT	8 cut(s)	293, 388, 434, 457, 591, 597, 697, 704
AluI	AGCT	8 cut(s)	293, 388, 434, 457, 591, 597, 697, 704
Alw21I	GWGCWC	2 cut(s)	574, 699
Alw26I	GTCTC	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	668
ApeKI	GCWGC	6 cut(s)	75, 417, 426, 588, 597, 660
AspS9I	GGNCC	3 cut(s)	316, 352, 668
AsuC2I	CCSGG	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	505
AvaII	GGWCC	2 cut(s)	316, 352
BanI	GGYRCC	1 cut(s)	796
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	2 cut(s)	574, 699
BbvI	GCAGC	6 cut(s)	87, 404, 413, 584, 600, 672
BccI	CCATC	2 cut(s)	273, 808
BceAI	ACGGC	2 cut(s)	208, 239
BciT130I	CCWGG	3 cut(s)	40, 414, 856
BcnI	CCSGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	2 cut(s)	356, 701
BisI	GCNGC	6 cut(s)	76, 418, 427, 589, 598, 661
BlsI	GCNGC	6 cut(s)	77, 419, 428, 590, 599, 662
Bme1390I	CCNGG	4 cut(s)	40, 379, 414, 856
Bme18I	GGWCC	2 cut(s)	316, 352
BmgT120I	GGNCC	3 cut(s)	316, 352, 668
BmiI	GGNNCC	2 cut(s)	317, 798
BmrFI	CCNGG	4 cut(s)	40, 379, 414, 856
BmsI	GCATC	5 cut(s)	52, 87, 231, 350, 619
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	378, 664, 768
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	724, 754
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 419, 677
Bse1I	ACTGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	148
BseBI	CCWGG	3 cut(s)	40, 414, 856
BseDI	CCNNGG	3 cut(s)	378, 664, 768
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	225, 419, 677
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	701
BseXI	GCAGC	6 cut(s)	87, 404, 413, 584, 600, 672
BsgI	GTGCAG	2 cut(s)	583, 679
BshFI	GGCC	1 cut(s)	670
BshNI	GGYRCC	1 cut(s)	796
BsiHKAI	GWGCWC	2 cut(s)	574, 699
BsiSI	CCGG	2 cut(s)	149, 378
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	225, 419, 677
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	670
Bsp1286I	GDGCHC	2 cut(s)	574, 699
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	612, 780
BspACI	CCGC	4 cut(s)	347, 420, 556, 655
BspANI	GGCC	1 cut(s)	670
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	317, 798
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	796
BsrBI	CCGCTC	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	378, 664, 768
BssMI	GATC	2 cut(s)	612, 780
BssT1I	CCWWGG	2 cut(s)	664, 768
Bst2UI	CCWGG	3 cut(s)	40, 414, 856
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	2 cut(s)	441, 786
BstC8I	GCNNGC	2 cut(s)	459, 765
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	615, 783
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	612, 780
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 251, 423, 426, 588, 594, 597, 794
BstNI	CCWGG	3 cut(s)	40, 414, 856
BstSCI	CCNGG	4 cut(s)	38, 377, 412, 854
BstV1I	GCAGC	6 cut(s)	87, 404, 413, 584, 600, 672
BstV2I	GAAGAC	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	2 cut(s)	459, 765
Cfr13I	GGNCC	3 cut(s)	316, 352, 668
CseI	GACGC	1 cut(s)	807
CviAII	CATG	4 cut(s)	328, 517, 539, 575
DpnI	GATC	2 cut(s)	614, 782
DpnII	GATC	2 cut(s)	612, 780
Eam1104I	CTCTTC	2 cut(s)	441, 786
EarI	CTCTTC	2 cut(s)	441, 786
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	664, 768
Eco24I	GRGCYC	1 cut(s)	699
Eco47I	GGWCC	2 cut(s)	316, 352
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	473, 577, 810
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	352
EcoRII	CCWGG	3 cut(s)	38, 412, 854
EcoT14I	CCWWGG	2 cut(s)	664, 768
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	2 cut(s)	664, 768
FaeI	CATG	4 cut(s)	331, 520, 542, 578
FaiI	YATR	5 cut(s)	329, 451, 518, 540, 576
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	4 cut(s)	327, 516, 538, 574
Fnu4HI	GCNGC	6 cut(s)	76, 418, 427, 589, 598, 661
FokI	GGATG	1 cut(s)	426
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	6 cut(s)	76, 418, 427, 589, 598, 661
FspBI	CTAG	2 cut(s)	356, 701
GluI	GCNGC	6 cut(s)	76, 418, 427, 589, 598, 661
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	670
HapII	CCGG	2 cut(s)	149, 378
HgaI	GACGC	1 cut(s)	807
Hin1II	CATG	4 cut(s)	331, 520, 542, 578
HinfI	GANTC	2 cut(s)	145, 362
HpaII	CCGG	2 cut(s)	149, 378
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	2 cut(s)	282, 297
Hpy188III	TCNNGA	4 cut(s)	149, 226, 273, 616
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	304, 497, 559
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	5 cut(s)	429, 588, 600, 632, 660
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 251, 423, 426, 588, 594, 597, 794
Hsp92II	CATG	4 cut(s)	331, 520, 542, 578
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	612, 780
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	702
Lsp1109I	GCAGC	6 cut(s)	87, 404, 413, 584, 600, 672
LweI	GCATC	5 cut(s)	52, 87, 231, 350, 619
MaeI	CTAG	2 cut(s)	356, 701
MaeIII	GTNAC	2 cut(s)	521, 847
MalI	GATC	2 cut(s)	614, 782
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	2 cut(s)	612, 780
MboII	GAAGA	7 cut(s)	240, 397, 428, 544, 767, 800, 803
MhlI	GDGCHC	2 cut(s)	574, 699
MluCI	AATT	3 cut(s)	103, 259, 482
Mph1103I	ATGCAT	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	1 cut(s)	258
MspA1I	CMGCKG	2 cut(s)	457, 597
MspI	CCGG	2 cut(s)	149, 378
MspR9I	CCNGG	4 cut(s)	40, 379, 414, 856
MvaI	CCWGG	3 cut(s)	40, 414, 856
MwoI	GCNNNNNNNGC	8 cut(s)	212, 251, 423, 426, 588, 594, 597, 794
NciI	CCSGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	612, 780
NlaIII	CATG	4 cut(s)	331, 520, 542, 578
NlaIV	GGNNCC	2 cut(s)	317, 798
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	145, 362
PkrI	GCNGC	6 cut(s)	77, 419, 428, 590, 599, 662
PpuMI	RGGWCCY	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	352
Psp6I	CCWGG	3 cut(s)	38, 412, 854
PspGI	CCWGG	3 cut(s)	38, 412, 854
PspN4I	GGNNCC	2 cut(s)	317, 798
PspPI	GGNCC	3 cut(s)	316, 352, 668
PspPPI	RGGWCCY	1 cut(s)	352
PvuII	CAGCTG	2 cut(s)	457, 597
SacI	GAGCTC	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	6 cut(s)	76, 418, 427, 589, 598, 661
Sau3AI	GATC	2 cut(s)	612, 780
Sau96I	GGNCC	3 cut(s)	316, 352, 668
ScrFI	CCNGG	4 cut(s)	40, 379, 414, 856
SduI	GDGCHC	2 cut(s)	574, 699
SfaNI	GCATC	5 cut(s)	52, 87, 231, 350, 619
SinI	GGWCC	2 cut(s)	316, 352
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
Sse9I	AATT	3 cut(s)	103, 259, 482
SsiI	CCGC	4 cut(s)	347, 420, 556, 655
SspMI	CTAG	2 cut(s)	356, 701
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	4 cut(s)	38, 377, 412, 854
StyI	CCWWGG	2 cut(s)	664, 768
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	1 cut(s)	173
TasI	AATT	3 cut(s)	103, 259, 482
TfiI	GAWTC	2 cut(s)	145, 362
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	6 cut(s)	75, 417, 426, 588, 597, 660
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	5 cut(s)	147, 344, 428, 482, 527
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	856
VpaK11BI	GGWCC	2 cut(s)	316, 352
XspI	CTAG	2 cut(s)	356, 701
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.