AT1G08770

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004291
Physical Location & Seq
Forward (+)
2808760 .. 2809775
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G08770.1

Sequence Viewer

Length: 630 bp
ATGAATCAGAAACCTCCGCCGTACGGTTATGGCGGCGCTGGTGGTGGAGGAGTCGGTCCTTCTTCCACTTCCAACACCACAATCATCGGGACGTTGAGTGCACGCGCCAAGCAGACGACGCAATCGATGATCACGACGCTCCGTCCATGGCGAGAGATTCTCGATCTGTCCGCGCTCTCTCTCCCTCGCGGGTATGATGAAGCCATGGCGCATCTAAAGCACAACATCTCTTATTTCCGTGGAAATTACGCTCTCGCCGTTCTCGCCATTGTTTTCCTCGGCCTTATTTACCATCCGATGTCTATGATCGCTTTCATCGTCGTCTTCATCGGATGGATTCTTCTCTATTTCTCTCGAGACGCAAACGATTCGATTGTGATTTCGGGGAAAGAAGTAGATGACAAGATCGTGCTGGTTTTACTCAGCTTGGTAACGGTTTTGGCATTGGTATATACAGATGTGGGCGAAAACGTTCTGGTTTCGCTGATCATTGGTTTGCTCATCGTCGGAGCTCACGGCGCTTTTCGTAATACCGATGATTTGTTTCTTGATGAAGAAAGTGCTCGCCGTGGTGGCCTGGTGTCTGCCGGTTCTGGTAACCGGCCACCGTCGAGTTATACCCCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006810 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

209

Amino Acids

22.41

Weight (kDa)

6.4

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 44 - 186 6.7e-46 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 105, 173, 189
AciI CCGC 4 cut(s) 17, 33, 171, 189
AclI AACGTT 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 602
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 23
AhdI GACNNNNNGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 576
AluBI AGCT 2 cut(s) 426, 512
AluI AGCT 2 cut(s) 426, 512
Alw21I GWGCWC 3 cut(s) 103, 514, 565
Alw26I GTCTC 1 cut(s) 351
Alw44I GTGCAC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 3 cut(s) 280, 574, 602
ApaLI GTGCAC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 5 cut(s) 38, 107, 175, 211, 521
AspS9I GGNCC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 1 cut(s) 56
BaeGI GKGCMC 1 cut(s) 103
BanII GRGCYC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 3 cut(s) 103, 514, 565
BccI CCATC 2 cut(s) 300, 327
BceAI ACGGC 4 cut(s) 4, 242, 532, 552
BcgI CGANNNNNNTGC 2 cut(s) 351, 385
BciT130I CCWGG 1 cut(s) 578
BclI TGATCA 2 cut(s) 129, 486
BcoDI GTCTC 1 cut(s) 351
BfoI RGCGCY 2 cut(s) 39, 522
BglI GCCNNNNNGGC 1 cut(s) 573
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 578
Bme18I GGWCC 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 578
BmsI GCATC 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 144, 176
Bsa29I ATCGAT 1 cut(s) 125
BsaJI CCNNGG 5 cut(s) 146, 204, 238, 277, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 2 cut(s) 587, 600
BseBI CCWGG 1 cut(s) 578
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 5 cut(s) 146, 204, 238, 277, 568
BseGI GGATG 2 cut(s) 292, 338
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 105, 173, 189
BshFI GGCC 3 cut(s) 282, 576, 604
BshVI ATCGAT 1 cut(s) 125
BsiHKAI GWGCWC 3 cut(s) 103, 514, 565
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 2 cut(s) 588, 601
BsiWI CGTACG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 351
BsmBI CGTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 103
BsnI GGCC 3 cut(s) 282, 576, 604
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 3 cut(s) 103, 514, 565
Bsp143I GATC 5 cut(s) 129, 163, 306, 405, 486
Bsp19I CCATGG 2 cut(s) 146, 204
BspACI CCGC 4 cut(s) 17, 33, 171, 189
BspANI GGCC 3 cut(s) 282, 576, 604
BspCNI CTCAG 1 cut(s) 435
BspDI ATCGAT 1 cut(s) 125
BspFNI CGCG 3 cut(s) 105, 173, 189
BsrFI RCCGGY 2 cut(s) 587, 600
BssAI RCCGGY 2 cut(s) 587, 600
BssECI CCNNGG 5 cut(s) 146, 204, 238, 277, 568
BssMI GATC 5 cut(s) 129, 163, 306, 405, 486
BssT1I CCWWGG 2 cut(s) 146, 204
Bst2UI CCWGG 1 cut(s) 578
Bst4CI ACNGT 3 cut(s) 26, 436, 609
BstC8I GCNNGC 2 cut(s) 103, 565
BstDEI CTNAG 1 cut(s) 422
BstDSI CCRYGG 4 cut(s) 146, 204, 238, 568
BstEII GGTNACC 1 cut(s) 596
BstF5I GGATG 2 cut(s) 292, 338
BstFNI CGCG 3 cut(s) 105, 173, 189
BstH2I RGCGCY 2 cut(s) 39, 522
BstHHI GCGC 5 cut(s) 38, 107, 175, 211, 521
BstKTI GATC 5 cut(s) 132, 166, 309, 408, 489
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 5 cut(s) 129, 163, 306, 405, 486
BstMWI GCNNNNNNNGC 5 cut(s) 118, 217, 263, 518, 573
BstNI CCWGG 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 596
BstSCI CCNGG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 3 cut(s) 105, 173, 189
BstV2I GAAGAC 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 125
BsuRI GGCC 3 cut(s) 282, 576, 604
BsuTUI ATCGAT 1 cut(s) 125
BtgI CCRYGG 4 cut(s) 146, 204, 238, 568
BtsCI GGATG 2 cut(s) 292, 338
Cac8I GCNNGC 2 cut(s) 103, 565
CfoI GCGC 5 cut(s) 38, 107, 175, 211, 521
Cfr10I RCCGGY 2 cut(s) 587, 600
Cfr13I GGNCC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 3 cut(s) 127, 145, 368
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 147, 205
CviJI RGCY 6 cut(s) 203, 282, 426, 512, 576, 604
CviKI_1 RGCY 6 cut(s) 203, 282, 426, 512, 576, 604
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 422
DpnI GATC 5 cut(s) 131, 165, 308, 407, 488
DpnII GATC 5 cut(s) 129, 163, 306, 405, 486
DriI GACNNNNNGTC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 602
Eam1105I GACNNNNNGTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 512
Eco130I CCWWGG 2 cut(s) 146, 204
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 354
Eco91I GGTNACC 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 576
EcoT14I CCWWGG 2 cut(s) 146, 204
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 146, 204
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 2 cut(s) 150, 208
FaiI YATR 8 cut(s) 30, 148, 195, 206, 305, 451, 453, 618
FaqI GGGAC 1 cut(s) 103
FatI CATG 2 cut(s) 146, 204
FauI CCCGC 1 cut(s) 182
FbaI TGATCA 2 cut(s) 129, 486
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 2 cut(s) 279, 345
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 1 cut(s) 34
GlaI GCGC 5 cut(s) 37, 106, 174, 210, 520
GluI GCNGC 1 cut(s) 34
HaeII RGCGCY 2 cut(s) 39, 522
HaeIII GGCC 3 cut(s) 282, 576, 604
HapII CCGG 2 cut(s) 588, 601
HgaI GACGC 3 cut(s) 127, 145, 368
HhaI GCGC 5 cut(s) 38, 107, 175, 211, 521
Hin1II CATG 2 cut(s) 150, 208
Hin6I GCGC 5 cut(s) 36, 105, 173, 209, 519
HinP1I GCGC 5 cut(s) 36, 105, 173, 209, 519
HinfI GANTC 5 cut(s) 4, 51, 157, 337, 368
HpaII CCGG 2 cut(s) 588, 601
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 4 cut(s) 9, 297, 332, 509
Hpy188III TCNNGA 6 cut(s) 88, 133, 161, 354, 356, 548
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 5 cut(s) 121, 139, 323, 509, 613
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 3 cut(s) 26, 436, 609
HpyCH4IV ACGT 2 cut(s) 92, 471
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 217, 263, 518, 573
HpyF3I CTNAG 1 cut(s) 422
HpySE526I ACGT 2 cut(s) 92, 471
Hsp92II CATG 2 cut(s) 150, 208
HspAI GCGC 5 cut(s) 36, 105, 173, 209, 519
Ksp22I TGATCA 2 cut(s) 129, 486
Kzo9I GATC 5 cut(s) 129, 163, 306, 405, 486
LmnI GCTCC 2 cut(s) 144, 509
LpnPI CCDG 8 cut(s) 24, 398, 461, 563, 579, 590, 601, 614
LweI GCATC 1 cut(s) 220
MaeII ACGT 2 cut(s) 92, 471
MaeIII GTNAC 2 cut(s) 430, 596
MalI GATC 5 cut(s) 131, 165, 308, 407, 488
MboI GATC 5 cut(s) 129, 163, 306, 405, 486
MboII GAAGA 4 cut(s) 54, 316, 332, 566
MhlI GDGCHC 3 cut(s) 103, 514, 565
MluCI AATT 2 cut(s) 244, 624
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 96, 487
MnlI CCTC 4 cut(s) 24, 41, 195, 287
MroXI GAANNNNTTC 1 cut(s) 471
MspI CCGG 2 cut(s) 588, 601
MspR9I CCNGG 1 cut(s) 578
MvaI CCWGG 1 cut(s) 578
MvnI CGCG 3 cut(s) 105, 173, 189
MwoI GCNNNNNNNGC 5 cut(s) 118, 217, 263, 518, 573
NcoI CCATGG 2 cut(s) 146, 204
NdeII GATC 5 cut(s) 129, 163, 306, 405, 486
NlaIII CATG 2 cut(s) 150, 208
NmeAIII GCCGAG 1 cut(s) 258
PaeR7I CTCGAG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 4 cut(s) 122, 131, 255, 315
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 4, 157, 337, 368
Pfl23II CGTACG 1 cut(s) 21
PkrI GCNGC 1 cut(s) 35
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 576
PspEI GGTNACC 1 cut(s) 596
PspGI CCWGG 1 cut(s) 576
PspLI CGTACG 1 cut(s) 21
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SacI GAGCTC 1 cut(s) 514
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 5 cut(s) 129, 163, 306, 405, 486
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 578
SduI GDGCHC 3 cut(s) 103, 514, 565
SetI ASST 5 cut(s) 16, 95, 428, 474, 514
SfaNI GCATC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 354
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 2 cut(s) 244, 624
SsiI CCGC 4 cut(s) 17, 33, 171, 189
SstI GAGCTC 1 cut(s) 514
StyD4I CCNGG 1 cut(s) 576
StyI CCWWGG 2 cut(s) 146, 204
TaaI ACNGT 3 cut(s) 26, 436, 609
TaiI ACGT 2 cut(s) 95, 474
TaqI TCGA 5 cut(s) 125, 162, 355, 371, 611
TaqII GACCGA 1 cut(s) 44
TasI AATT 2 cut(s) 244, 624
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 4 cut(s) 4, 157, 337, 368
TspDTI ATGAA 5 cut(s) 17, 213, 304, 316, 567
TspGWI ACGGA 2 cut(s) 131, 227
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.