Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004291

Physical Location & Seq

Genomic Coordinates Forward (+)

20600062 .. 20602391

Gene Structure 2330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G231200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCTTTAGATTCAAATGCTTACTATGGCACCCTACCATCAACCACCGCCACCAGCACCGCCGCACCCTCAACGTTCTTTCGTGCCAGAGAAACGACCCAGTCCTTCTTCGCTAAGCGCCGCCCATGGCTCGAGCTCGTCCAGCCCTTCTACAACTTCACGCGCCCCTACACCTTCAGCGACGCCACAATCCGAATCAAGCGCAACCTCAGCTACTTCCGCGTCAACTACACCATGGTCGTCCTCTTCATCCTCTTCCTCAGTCTGCTGTGGCACCCAGTCTCCTTAATCGTATTTCTCCTCGTCTTCGTCGCCTGGTTCTTCCTCTACTTCTTCCGCGACAACCCACTCGTCATTTTCAACCATATCGTCGACGACCGTATCGTTTTGGGCGTGCTTGGCGTCGTCACCATCGTCGCTCTGATTTTCACGCACGTGTGGTTGAACGTGTTGGTCTCTGTTCTAATTGGGGTCGCAATTGTTGCGTTACACGCAGCTTTTAGGGGTACGGAGGATTTGTATAACGACGAGCAAGAAGCTGCCGAAGGTGGGTTGCTTTCGGTTGTGGGCAGTCCCACGCGACCTAGGTACTCCCGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

201

Amino Acids

22.82

Weight (kDa)

9.34

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08770
fragaria_vesca	FvH4_2g22330 FvH4_2g22330 FvH4_2g22330 FvH4_6g02681
malus_domestica	MD04G1225900.v1.1 MD05G1204600.v1.1 MD10G1191700.v1.1 MD12G1243000.v1.1
prunus_persica	Prupe.6G344700_v2.0.a1 Prupe.8G231200_v2.0.a1 Prupe.8G231200_v2.0.a1
pyrus_communis	pycom04g19910 pycom10g16530 pycom12g22200
rosa_chinensis	RchiOBHm_Chr3g0450661 RchiOBHm_Chr6g0289341
rosa_laevigata	RLG00000012311 RLG00000025713
rosa_multiflora	Rmu_co8063204.1_g000001 Rmu_co8227881.1_g000001 Rmu_sc0000078.1_g000036 Rmu_sc0000078.1_g000038 Rmu_sc0001527.1_g000028 Rmu_sc0005115.1_g000005
rosa_roxburghii	Rroxscaffold_6G00405210 Rroxscaffold_6G00428320
rosa_rugosa	Rorug02G0629400 Rorug06G0202900
rosa_samantha	Rh6CG327500
rosa_wichuraiana	Rw3G002320 Rw6G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 273
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	5 cut(s)	163, 222, 339, 580, 597
AciI	CCGC	7 cut(s)	48, 60, 63, 121, 220, 337, 595
AclI	AACGTT	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	160
AcvI	CACGTG	1 cut(s)	436
AcyI	GRCGYC	2 cut(s)	183, 402
AfaI	GTAC	2 cut(s)	508, 590
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	2 cut(s)	435, 447
AgsI	TTSAA	3 cut(s)	15, 361, 445
AjnI	CCWGG	1 cut(s)	314
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	4 cut(s)	136, 213, 497, 539
AluI	AGCT	4 cut(s)	136, 213, 497, 539
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	286, 460
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	494, 539
AspA2I	CCTAGG	1 cut(s)	584
AspLEI	GCGC	4 cut(s)	120, 165, 204, 599
AsuHPI	GGTGA	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	584
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BanI	GGYRCC	2 cut(s)	29, 273
BanII	GRGCYC	1 cut(s)	138
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	506, 526
BccI	CCATC	2 cut(s)	46, 419
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	286, 460
BfaI	CTAG	1 cut(s)	585
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	4 cut(s)	63, 121, 495, 540
BlnI	CCTAGG	1 cut(s)	584
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	4 cut(s)	64, 122, 496, 541
Bme1390I	CCNGG	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	31, 275
BmrFI	CCNGG	1 cut(s)	316
BmrI	ACTGGG	2 cut(s)	94, 272
BmuI	ACTGGG	2 cut(s)	94, 272
BpiI	GAAGAC	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	183, 402
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	3 cut(s)	125, 234, 584
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	100, 278
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	3 cut(s)	125, 234, 584
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	223, 274
BseNI	ACTGG	2 cut(s)	100, 278
BseRI	GAGGAG	1 cut(s)	290
BseXI	GCAGC	2 cut(s)	506, 526
Bsh1236I	CGCG	5 cut(s)	163, 222, 339, 580, 597
Bsh1285I	CGRYCG	1 cut(s)	379
BshNI	GGYRCC	2 cut(s)	29, 273
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	286, 460
BsmFI	GGGAC	1 cut(s)	558
Bso31I	GGTCTC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	114
Bsp19I	CCATGG	2 cut(s)	125, 234
BspACI	CCGC	7 cut(s)	48, 60, 63, 121, 220, 337, 595
BspCNI	CTCAG	2 cut(s)	222, 273
BspFNI	CGCG	5 cut(s)	163, 222, 339, 580, 597
BspLI	GGNNCC	2 cut(s)	31, 275
BspT107I	GGYRCC	2 cut(s)	29, 273
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	100, 278
BssECI	CCNNGG	3 cut(s)	125, 234, 584
BssNI	GRCGYC	2 cut(s)	183, 402
BssT1I	CCWWGG	3 cut(s)	125, 234, 584
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	2 cut(s)	251, 260
BstACI	GRCGYC	2 cut(s)	183, 402
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	395
BstDEI	CTNAG	4 cut(s)	114, 209, 260, 600
BstDSI	CCRYGG	2 cut(s)	125, 234
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	5 cut(s)	163, 222, 339, 580, 597
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	4 cut(s)	120, 165, 204, 599
BstMAI	GTCTC	2 cut(s)	286, 460
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	6 cut(s)	142, 210, 219, 399, 482, 491
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstUI	CGCG	5 cut(s)	163, 222, 339, 580, 597
BstV1I	GCAGC	2 cut(s)	506, 526
BstV2I	GAAGAC	1 cut(s)	298
BtgI	CCRYGG	2 cut(s)	125, 234
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	395
CfoI	GCGC	4 cut(s)	120, 165, 204, 599
CseI	GACGC	3 cut(s)	191, 211, 391
Csp6I	GTAC	2 cut(s)	507, 589
CviAII	CATG	2 cut(s)	126, 235
CviJI	RGCY	6 cut(s)	130, 136, 145, 213, 497, 539
CviKI_1	RGCY	6 cut(s)	130, 136, 145, 213, 497, 539
CviQI	GTAC	2 cut(s)	507, 589
DdeI	CTNAG	4 cut(s)	114, 209, 260, 600
Eam1104I	CTCTTC	2 cut(s)	251, 260
EarI	CTCTTC	2 cut(s)	251, 260
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	3 cut(s)	125, 234, 584
Eco24I	GRGCYC	1 cut(s)	138
Eco31I	GGTCTC	1 cut(s)	460
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	160
Eco72I	CACGTG	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	3 cut(s)	125, 234, 584
EcoT38I	GRGCYC	1 cut(s)	138
ErhI	CCWWGG	3 cut(s)	125, 234, 584
FaeI	CATG	2 cut(s)	129, 238
FaiI	YATR	5 cut(s)	27, 127, 236, 366, 522
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	2 cut(s)	125, 234
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	4 cut(s)	63, 121, 495, 540
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	63, 121, 495, 540
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	4 cut(s)	119, 164, 203, 598
GluI	GCNGC	4 cut(s)	63, 121, 495, 540
HaeII	RGCGCY	1 cut(s)	121
HgaI	GACGC	3 cut(s)	191, 211, 391
HhaI	GCGC	4 cut(s)	120, 165, 204, 599
Hin1I	GRCGYC	2 cut(s)	183, 402
Hin1II	CATG	2 cut(s)	129, 238
Hin6I	GCGC	4 cut(s)	118, 163, 202, 597
HinP1I	GCGC	4 cut(s)	118, 163, 202, 597
HincII	GTYRAC	2 cut(s)	226, 373
HindII	GTYRAC	2 cut(s)	226, 373
HinfI	GANTC	2 cut(s)	11, 195
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	2 cut(s)	226, 373
Hpy188I	TCNGA	2 cut(s)	194, 423
Hpy8I	GTNNAC	2 cut(s)	226, 373
Hpy99I	CGWCG	7 cut(s)	185, 314, 374, 377, 407, 419, 530
HpyAV	CCTTC	4 cut(s)	115, 157, 184, 539
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	3 cut(s)	74, 435, 447
HpyF10VI	GCNNNNNNNGC	6 cut(s)	142, 210, 219, 399, 482, 491
HpyF3I	CTNAG	4 cut(s)	114, 209, 260, 600
HpySE526I	ACGT	3 cut(s)	74, 435, 447
Hsp92I	GRCGYC	2 cut(s)	183, 402
Hsp92II	CATG	2 cut(s)	129, 238
HspAI	GCGC	4 cut(s)	118, 163, 202, 597
LpnPI	CCDG	7 cut(s)	67, 100, 113, 155, 291, 301, 328
Lsp1109I	GCAGC	2 cut(s)	506, 526
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	3 cut(s)	74, 435, 447
MaeIII	GTNAC	2 cut(s)	406, 486
MboII	GAAGA	6 cut(s)	100, 238, 247, 298, 313, 325
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	2 cut(s)	465, 477
MnlI	CCTC	8 cut(s)	79, 218, 254, 263, 269, 311, 335, 505
MseI	TTAA	1 cut(s)	287
MslI	CAYNNNNRTG	1 cut(s)	434
MspR9I	CCNGG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	5 cut(s)	163, 222, 339, 580, 597
MwoI	GCNNNNNNNGC	6 cut(s)	142, 210, 219, 399, 482, 491
NcoI	CCATGG	2 cut(s)	125, 234
NlaIII	CATG	2 cut(s)	129, 238
NlaIV	GGNNCC	2 cut(s)	31, 275
NmuCI	GTSAC	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	3 cut(s)	381, 390, 411
PfeI	GAWTC	2 cut(s)	11, 195
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	64, 122, 496, 541
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	138
Psp1406I	AACGTT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	314
PspCI	CACGTG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	31, 275
PspXI	VCTCGAGB	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	100
RsaI	GTAC	2 cut(s)	508, 590
RsaNI	GTAC	2 cut(s)	507, 589
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	4 cut(s)	63, 121, 495, 540
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	138
Sfr274I	CTCGAG	1 cut(s)	131
SgrDI	CGTCGACG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	465, 477
SsiI	CCGC	7 cut(s)	48, 60, 63, 121, 220, 337, 595
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	3 cut(s)	125, 234, 584
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	3 cut(s)	77, 438, 450
TaqI	TCGA	2 cut(s)	132, 372
TasI	AATT	2 cut(s)	465, 477
TauI	GCSGC	2 cut(s)	65, 123
TfiI	GAWTC	2 cut(s)	11, 195
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	494, 539
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	524
Tth111I	GACNNNGTC	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	131
XmaJI	CCTAGG	1 cut(s)	584
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.