RchiOBHm_Chr6g0289341

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004291
Physical Location & Seq
Forward (+)
52430688 .. 52432337
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25957

Sequence Viewer

Length: 612 bp
ATGTCTTCCTCCAATTCCAAAGCCGCCCCCTACGGCACCCTCCCTCCCCCCGCCGCCGCCGCCGCCGCATACACAACCCCAACCACGACGTTCTCACGCGCCAGAGACGCCACCCAGGCCGTCTTCGCCACGCGCCGCCCGTGGCTCGAGCTGGTCCAGCCTTTCTCCAGCTTCACGCGCCCGGACACTTTTGGCGCGGCCACGCTCCGAATCAAGAGCAACCTCAGCCACTTCCGGGTCAACTACGCCATGGCCGTCCTCTTCATCCTCTTCCTCAGCCTCCTCTGGCACCCCGTCTCCCTCATCGTCTTCCTCCTCGTCTTCGTCGCCTGGTTCTTCCTCTACTTCTTCCGCGACGCTCCCCTCGTCCTCTTCAATTGGATCGTCGACGACCGCATCGTCCTCGCCGTCCTCGCCCTCGTCACCGTCGTCGCTCTCGTCTTCACCAGCGTCTGGTTGAACGTCCTCGTCTCCATTCTCGTTGGGATCGCGCTCGTGCTGTTACACGCGGCGTTTCGGGGCACTGAGGATTTGTATAGGGATGACCTAGAAGGCGGCGGCTTGTTTTCGGTCGTGGGCAGCCCCACCCGTGATGGCTACACCGGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

203

Amino Acids

22.4

Weight (kDa)

9.15

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 42 - 182 3.8e-47 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 2 cut(s) 35, 288
AccB7I CCANNNNNTGG 1 cut(s) 453
AccI GTMKAC 1 cut(s) 387
AccII CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
AclWI GGATC 2 cut(s) 389, 494
AcoI YGGCCR 2 cut(s) 198, 252
AcyI GRCGYC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 235, 453
AgsI TTSAA 2 cut(s) 376, 460
AjnI CCWGG 2 cut(s) 114, 329
AluBI AGCT 2 cut(s) 151, 171
AluI AGCT 2 cut(s) 151, 171
Alw26I GTCTC 3 cut(s) 99, 301, 475
AlwI GGATC 2 cut(s) 389, 494
AlwNI CAGNNNCTG 1 cut(s) 453
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 3 cut(s) 117, 198, 252
ApeKI GCWGC 1 cut(s) 579
AspLEI GCGC 5 cut(s) 101, 135, 180, 197, 493
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 2 cut(s) 182, 236
AsuHPI GGTGA 2 cut(s) 415, 436
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 524
BanI GGYRCC 2 cut(s) 35, 288
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 4 cut(s) 115, 301, 313, 433
BbvCI CCTCAGC 2 cut(s) 224, 275
BbvI GCAGC 1 cut(s) 591
BccI CCATC 1 cut(s) 587
BceAI ACGGC 4 cut(s) 49, 104, 239, 392
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 2 cut(s) 116, 331
BcnI CCSGG 2 cut(s) 182, 236
BcoDI GTCTC 3 cut(s) 99, 301, 475
BfaI CTAG 2 cut(s) 548, 610
BglI GCCNNNNNGGC 1 cut(s) 116
Bme1390I CCNGG 4 cut(s) 116, 182, 236, 331
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 37, 290
BmrFI CCNGG 4 cut(s) 116, 182, 236, 331
BmsI GCATC 1 cut(s) 405
BpiI GAAGAC 4 cut(s) 115, 301, 313, 433
BpmI CTGGAG 1 cut(s) 151
Bpu10I CCTNAGC 2 cut(s) 224, 275
BpuMI CCSGG 2 cut(s) 182, 236
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 3 cut(s) 114, 140, 249
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 281, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 453
Bse118I RCCGGY 1 cut(s) 602
BseBI CCWGG 2 cut(s) 116, 331
BseDI CCNNGG 3 cut(s) 114, 140, 249
BseGI GGATG 2 cut(s) 264, 547
BseLI CCNNNNNNNGG 2 cut(s) 235, 453
BseMII CTCAG 3 cut(s) 238, 289, 516
BseRI GAGGAG 2 cut(s) 272, 305
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 1 cut(s) 591
Bsh1236I CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
Bsh1285I CGRYCG 2 cut(s) 394, 573
BshFI GGCC 3 cut(s) 119, 200, 254
BshNI GGYRCC 2 cut(s) 35, 288
BsiEI CGRYCG 2 cut(s) 394, 573
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 3 cut(s) 182, 235, 603
BslI CCNNNNNNNGG 2 cut(s) 235, 453
BsmAI GTCTC 3 cut(s) 99, 301, 475
BsmBI CGTCTC 3 cut(s) 99, 301, 475
BsnI GGCC 3 cut(s) 119, 200, 254
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 381, 486
Bsp19I CCATGG 1 cut(s) 249
BspANI GGCC 3 cut(s) 119, 200, 254
BspCNI CTCAG 3 cut(s) 237, 288, 517
BspFNI CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
BspLI GGNNCC 2 cut(s) 37, 290
BspPI GGATC 2 cut(s) 389, 494
BspT107I GGYRCC 2 cut(s) 35, 288
BsrFI RCCGGY 1 cut(s) 602
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 3 cut(s) 114, 140, 249
BssMI GATC 2 cut(s) 381, 486
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 494
BssT1I CCWWGG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 2 cut(s) 116, 331
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 3 cut(s) 266, 275, 377
BstACI GRCGYC 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 224, 275, 525
BstDSI CCRYGG 2 cut(s) 140, 249
BstF5I GGATG 2 cut(s) 264, 547
BstFNI CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
BstHHI GCGC 5 cut(s) 101, 135, 180, 197, 493
BstKTI GATC 2 cut(s) 384, 489
BstMAI GTCTC 3 cut(s) 99, 301, 475
BstMBI GATC 2 cut(s) 381, 486
BstMCI CGRYCG 2 cut(s) 394, 573
BstNI CCWGG 2 cut(s) 116, 331
BstSCI CCNGG 4 cut(s) 114, 180, 234, 329
BstSLI GKGCMC 1 cut(s) 524
BstUI CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
BstV1I GCAGC 1 cut(s) 591
BstV2I GAAGAC 4 cut(s) 115, 301, 313, 433
BsuRI GGCC 3 cut(s) 119, 200, 254
BtgI CCRYGG 2 cut(s) 140, 249
BtsCI GGATG 2 cut(s) 264, 547
BtsIMutI CAGTG 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 453
CfoI GCGC 5 cut(s) 101, 135, 180, 197, 493
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 1 cut(s) 154
CseI GACGC 3 cut(s) 116, 365, 439
CviAII CATG 1 cut(s) 250
DdeI CTNAG 3 cut(s) 224, 275, 525
DpnI GATC 2 cut(s) 383, 488
DpnII GATC 2 cut(s) 381, 486
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 198, 252
Eam1104I CTCTTC 3 cut(s) 266, 275, 377
EarI CTCTTC 3 cut(s) 266, 275, 377
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 114, 329
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 3 cut(s) 99, 301, 475
FaeI CATG 1 cut(s) 253
FaiI YATR 3 cut(s) 70, 251, 537
FatI CATG 1 cut(s) 249
FauI CCCGC 1 cut(s) 58
FblI GTMKAC 1 cut(s) 387
FokI GGATG 2 cut(s) 251, 554
FspBI CTAG 2 cut(s) 548, 610
GlaI GCGC 5 cut(s) 100, 134, 179, 196, 492
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 119, 200, 254
HapII CCGG 3 cut(s) 182, 235, 603
HgaI GACGC 3 cut(s) 116, 365, 439
HhaI GCGC 5 cut(s) 101, 135, 180, 197, 493
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 5 cut(s) 99, 133, 178, 195, 491
HinP1I GCGC 5 cut(s) 99, 133, 178, 195, 491
HincII GTYRAC 2 cut(s) 241, 388
HindII GTYRAC 2 cut(s) 241, 388
HinfI GANTC 1 cut(s) 210
HpaII CCGG 3 cut(s) 182, 235, 603
HphI GGTGA 2 cut(s) 415, 436
Hpy166II GTNNAC 2 cut(s) 241, 388
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 241, 388
Hpy99I CGWCG 7 cut(s) 91, 329, 359, 389, 392, 431, 434
HpyAV CCTTC 1 cut(s) 545
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 2 cut(s) 89, 462
HpyF3I CTNAG 3 cut(s) 224, 275, 525
HpySE526I ACGT 2 cut(s) 89, 462
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 5 cut(s) 99, 133, 178, 195, 491
Kzo9I GATC 2 cut(s) 381, 486
LmnI GCTCC 2 cut(s) 210, 364
Lsp1109I GCAGC 1 cut(s) 591
LweI GCATC 1 cut(s) 405
MaeI CTAG 2 cut(s) 548, 610
MaeII ACGT 2 cut(s) 89, 462
MaeIII GTNAC 2 cut(s) 421, 501
MalI GATC 2 cut(s) 383, 488
MboI GATC 2 cut(s) 381, 486
MboII GAAGA 9 cut(s) 115, 253, 262, 301, 313, 328, 340, 364, 433
MfeI CAATTG 1 cut(s) 376
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 2 cut(s) 13, 376
MspI CCGG 3 cut(s) 182, 235, 603
MspR9I CCNGG 4 cut(s) 116, 182, 236, 331
MunI CAATTG 1 cut(s) 376
MvaI CCWGG 2 cut(s) 116, 331
MvnI CGCG 7 cut(s) 99, 133, 178, 197, 354, 491, 509
NciI CCSGG 2 cut(s) 182, 236
NcoI CCATGG 1 cut(s) 249
NdeII GATC 2 cut(s) 381, 486
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 37, 290
NmuCI GTSAC 1 cut(s) 421
PaeR7I CTCGAG 1 cut(s) 146
PcsI WCGNNNNNNNCGW 7 cut(s) 137, 252, 363, 396, 405, 426, 435
PfeI GAWTC 1 cut(s) 210
PflMI CCANNNNNTGG 1 cut(s) 453
Psp6I CCWGG 2 cut(s) 114, 329
PspGI CCWGG 2 cut(s) 114, 329
PspN4I GGNNCC 2 cut(s) 37, 290
PspPI GGNCC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 453
SalI GTCGAC 1 cut(s) 386
Sau3AI GATC 2 cut(s) 381, 486
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 4 cut(s) 116, 182, 236, 331
SduI GDGCHC 1 cut(s) 524
SetI ASST 6 cut(s) 92, 153, 173, 225, 465, 549
SfaNI GCATC 1 cut(s) 405
Sfr274I CTCGAG 1 cut(s) 146
SgrDI CGTCGACG 1 cut(s) 386
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 2 cut(s) 13, 376
SspMI CTAG 2 cut(s) 548, 610
StyD4I CCNGG 4 cut(s) 114, 180, 234, 329
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 2 cut(s) 92, 465
TaqI TCGA 2 cut(s) 147, 387
TaqII GACCGA 1 cut(s) 559
TasI AATT 2 cut(s) 13, 376
TfiI GAWTC 1 cut(s) 210
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 579
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 387
XspI CTAG 2 cut(s) 548, 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.