Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0004291

Physical Location & Seq

Genomic Coordinates Forward (+)

132793 .. 133395

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgtcttcctccaattccaaagccgccccctacggcaccctccctccccccgccgccgcatacacaaccccaaccacgacgttctcacgcgccagagacgccacccaggccgtcttcgccacgcgccgcccatggctcgagctggtccagcctttctccagcttcacgcgccccgacactttgggcacggccacgctccgaatcaagagcaacctcggccacttccgggtcaactacgccatggccgtcctcttcatcctcttcctcagcctcctctggcaccccgtctccctcatcgtcttcctcctcgtcttcgtcgcctggttcttcctctacttcttccgcgacgctcccctcgtcctcttcaattggatcgtcgacgaccgcatcgtcctcgccgtcctcgccctcgtcaccgtcgtcgctctcgtcttcaccagcgtctggttgaacgtcctcgtctccattctcgttgggatcgcgctcgtgctgttacacgcggcgtttcggggcactgaggatttgtatagggatgacctagaaggcggtggcttgttttcggtcgtgggcagccccacccgtgatggctacaccggcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

200

Amino Acids

22.15

Weight (kDa)

9.15

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08770
fragaria_vesca	FvH4_2g22330 FvH4_2g22330 FvH4_2g22330 FvH4_6g02681
malus_domestica	MD04G1225900.v1.1 MD05G1204600.v1.1 MD10G1191700.v1.1 MD12G1243000.v1.1
prunus_persica	Prupe.6G344700_v2.0.a1 Prupe.8G231200_v2.0.a1 Prupe.8G231200_v2.0.a1
pyrus_communis	pycom04g19910 pycom10g16530 pycom12g22200
rosa_chinensis	RchiOBHm_Chr3g0450661 RchiOBHm_Chr6g0289341
rosa_laevigata	RLG00000012311 RLG00000025713
rosa_multiflora	Rmu_co8063204.1_g000001 Rmu_co8227881.1_g000001 Rmu_sc0000078.1_g000036 Rmu_sc0000078.1_g000038 Rmu_sc0001527.1_g000028 Rmu_sc0005115.1_g000005
rosa_roxburghii	Rroxscaffold_6G00405210 Rroxscaffold_6G00428320
rosa_rugosa	Rorug02G0629400 Rorug06G0202900
rosa_samantha	Rh6CG327500
rosa_wichuraiana	Rw3G002320 Rw6G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	389
AccB1I	GGYRCC	2 cut(s)	35, 279
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
AciI	CCGC	9 cut(s)	24, 51, 54, 57, 127, 343, 385, 500, 546
AclWI	GGATC	2 cut(s)	380, 485
AcoI	YGGCCR	3 cut(s)	189, 217, 243
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	2 cut(s)	226, 444
AgsI	TTSAA	2 cut(s)	367, 451
AjnI	CCWGG	2 cut(s)	105, 320
AluBI	AGCT	2 cut(s)	142, 162
AluI	AGCT	2 cut(s)	142, 162
Alw26I	GTCTC	3 cut(s)	90, 292, 466
AlwI	GGATC	2 cut(s)	380, 485
AlwNI	CAGNNNCTG	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	4 cut(s)	108, 189, 217, 243
ApeKI	GCWGC	1 cut(s)	570
AspLEI	GCGC	4 cut(s)	92, 126, 171, 484
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	406, 427
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	2 cut(s)	188, 515
BanI	GGYRCC	2 cut(s)	35, 279
BauI	CACGAG	1 cut(s)	485
BbsI	GAAGAC	4 cut(s)	106, 292, 304, 424
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	582
BccI	CCATC	1 cut(s)	578
BceAI	ACGGC	5 cut(s)	49, 95, 204, 230, 383
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	2 cut(s)	107, 322
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	3 cut(s)	90, 292, 466
BfaI	CTAG	2 cut(s)	539, 601
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	6 cut(s)	24, 54, 57, 127, 501, 571
BlsI	GCNGC	6 cut(s)	25, 55, 58, 128, 502, 572
Bme1390I	CCNGG	3 cut(s)	107, 227, 322
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	37, 281
BmrFI	CCNGG	3 cut(s)	107, 227, 322
BmsI	GCATC	1 cut(s)	396
BpiI	GAAGAC	4 cut(s)	106, 292, 304, 424
BpmI	CTGGAG	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	105, 131, 214, 240
BsaXI	ACNNNNNCTCC	4 cut(s)	28, 58, 272, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 444
Bse118I	RCCGGY	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	107, 322
BseDI	CCNNGG	4 cut(s)	105, 131, 214, 240
BseGI	GGATG	2 cut(s)	255, 538
BseLI	CCNNNNNNNGG	2 cut(s)	226, 444
BseMII	CTCAG	2 cut(s)	280, 507
BseRI	GAGGAG	2 cut(s)	263, 296
BseSI	GKGCMC	2 cut(s)	188, 515
BseXI	GCAGC	1 cut(s)	582
Bsh1236I	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
Bsh1285I	CGRYCG	2 cut(s)	385, 564
BshFI	GGCC	4 cut(s)	110, 191, 219, 245
BshNI	GGYRCC	2 cut(s)	35, 279
BsiEI	CGRYCG	2 cut(s)	385, 564
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	226, 594
BslI	CCNNNNNNNGG	2 cut(s)	226, 444
BsmAI	GTCTC	3 cut(s)	90, 292, 466
BsmBI	CGTCTC	3 cut(s)	90, 292, 466
BsnI	GGCC	4 cut(s)	110, 191, 219, 245
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	188, 515
Bsp143I	GATC	2 cut(s)	372, 477
Bsp19I	CCATGG	2 cut(s)	131, 240
BspACI	CCGC	9 cut(s)	24, 51, 54, 57, 127, 343, 385, 500, 546
BspANI	GGCC	4 cut(s)	110, 191, 219, 245
BspCNI	CTCAG	2 cut(s)	279, 508
BspFNI	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
BspLI	GGNNCC	2 cut(s)	37, 281
BspPI	GGATC	2 cut(s)	380, 485
BspT107I	GGYRCC	2 cut(s)	35, 279
BsrFI	RCCGGY	1 cut(s)	593
BssAI	RCCGGY	1 cut(s)	593
BssECI	CCNNGG	4 cut(s)	105, 131, 214, 240
BssMI	GATC	2 cut(s)	372, 477
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	485
BssT1I	CCWWGG	2 cut(s)	131, 240
Bst2BI	CACGAG	1 cut(s)	485
Bst2UI	CCWGG	2 cut(s)	107, 322
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	3 cut(s)	257, 266, 368
BstACI	GRCGYC	1 cut(s)	99
BstDEI	CTNAG	2 cut(s)	266, 516
BstDSI	CCRYGG	2 cut(s)	131, 240
BstF5I	GGATG	2 cut(s)	255, 538
BstFNI	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
BstHHI	GCGC	4 cut(s)	92, 126, 171, 484
BstKTI	GATC	2 cut(s)	375, 480
BstMAI	GTCTC	3 cut(s)	90, 292, 466
BstMBI	GATC	2 cut(s)	372, 477
BstMCI	CGRYCG	2 cut(s)	385, 564
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 107, 116, 148, 168, 216, 404, 594
BstNI	CCWGG	2 cut(s)	107, 322
BstSCI	CCNGG	3 cut(s)	105, 225, 320
BstSLI	GKGCMC	2 cut(s)	188, 515
BstUI	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
BstV1I	GCAGC	1 cut(s)	582
BstV2I	GAAGAC	4 cut(s)	106, 292, 304, 424
BsuRI	GGCC	4 cut(s)	110, 191, 219, 245
BtgI	CCRYGG	2 cut(s)	131, 240
BtsCI	GGATG	2 cut(s)	255, 538
BtsIMutI	CAGTG	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	444
CfoI	GCGC	4 cut(s)	92, 126, 171, 484
Cfr10I	RCCGGY	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	3 cut(s)	107, 356, 430
CviAII	CATG	2 cut(s)	132, 241
DdeI	CTNAG	2 cut(s)	266, 516
DpnI	GATC	2 cut(s)	374, 479
DpnII	GATC	2 cut(s)	372, 477
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	3 cut(s)	189, 217, 243
Eam1104I	CTCTTC	3 cut(s)	257, 266, 368
EarI	CTCTTC	3 cut(s)	257, 266, 368
Eco130I	CCWWGG	2 cut(s)	131, 240
Eco47I	GGWCC	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	105, 320
EcoT14I	CCWWGG	2 cut(s)	131, 240
ErhI	CCWWGG	2 cut(s)	131, 240
Esp3I	CGTCTC	3 cut(s)	90, 292, 466
FaeI	CATG	2 cut(s)	135, 244
FaiI	YATR	4 cut(s)	61, 133, 242, 528
FatI	CATG	2 cut(s)	131, 240
FauI	CCCGC	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	6 cut(s)	24, 54, 57, 127, 501, 571
FokI	GGATG	2 cut(s)	242, 545
Fsp4HI	GCNGC	6 cut(s)	24, 54, 57, 127, 501, 571
FspBI	CTAG	2 cut(s)	539, 601
GlaI	GCGC	4 cut(s)	91, 125, 170, 483
GluI	GCNGC	6 cut(s)	24, 54, 57, 127, 501, 571
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	110, 191, 219, 245
HapII	CCGG	2 cut(s)	226, 594
HgaI	GACGC	3 cut(s)	107, 356, 430
HhaI	GCGC	4 cut(s)	92, 126, 171, 484
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	135, 244
Hin6I	GCGC	4 cut(s)	90, 124, 169, 482
HinP1I	GCGC	4 cut(s)	90, 124, 169, 482
HincII	GTYRAC	2 cut(s)	232, 379
HindII	GTYRAC	2 cut(s)	232, 379
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	2 cut(s)	226, 594
HphI	GGTGA	2 cut(s)	406, 427
Hpy166II	GTNNAC	2 cut(s)	232, 379
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	205
Hpy8I	GTNNAC	2 cut(s)	232, 379
Hpy99I	CGWCG	7 cut(s)	82, 320, 350, 380, 383, 422, 425
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	2 cut(s)	80, 453
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 107, 116, 148, 168, 216, 404, 594
HpyF3I	CTNAG	2 cut(s)	266, 516
HpySE526I	ACGT	2 cut(s)	80, 453
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	135, 244
HspAI	GCGC	4 cut(s)	90, 124, 169, 482
Kzo9I	GATC	2 cut(s)	372, 477
LmnI	GCTCC	2 cut(s)	201, 355
Lsp1109I	GCAGC	1 cut(s)	582
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	539, 601
MaeII	ACGT	2 cut(s)	80, 453
MaeIII	GTNAC	2 cut(s)	412, 492
MalI	GATC	2 cut(s)	374, 479
MboI	GATC	2 cut(s)	372, 477
MboII	GAAGA	9 cut(s)	106, 244, 253, 292, 304, 319, 331, 355, 424
MfeI	CAATTG	1 cut(s)	367
MhlI	GDGCHC	2 cut(s)	188, 515
MluCI	AATT	2 cut(s)	13, 367
MspI	CCGG	2 cut(s)	226, 594
MspR9I	CCNGG	3 cut(s)	107, 227, 322
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	2 cut(s)	107, 322
MvnI	CGCG	6 cut(s)	90, 124, 169, 345, 482, 500
MwoI	GCNNNNNNNGC	8 cut(s)	98, 107, 116, 148, 168, 216, 404, 594
NciI	CCSGG	1 cut(s)	227
NcoI	CCATGG	2 cut(s)	131, 240
NdeII	GATC	2 cut(s)	372, 477
NlaIII	CATG	2 cut(s)	135, 244
NlaIV	GGNNCC	2 cut(s)	37, 281
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	6 cut(s)	243, 354, 387, 396, 417, 426
PfeI	GAWTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	6 cut(s)	25, 55, 58, 128, 502, 572
Psp6I	CCWGG	2 cut(s)	105, 320
PspGI	CCWGG	2 cut(s)	105, 320
PspN4I	GGNNCC	2 cut(s)	37, 281
PspPI	GGNCC	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	444
SalI	GTCGAC	1 cut(s)	377
SatI	GCNGC	6 cut(s)	24, 54, 57, 127, 501, 571
Sau3AI	GATC	2 cut(s)	372, 477
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	107, 227, 322
SduI	GDGCHC	2 cut(s)	188, 515
SetI	ASST	6 cut(s)	83, 144, 164, 216, 456, 540
SfaNI	GCATC	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	137
SgrDI	CGTCGACG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	13, 367
SsiI	CCGC	9 cut(s)	24, 51, 54, 57, 127, 343, 385, 500, 546
SspMI	CTAG	2 cut(s)	539, 601
StyD4I	CCNGG	3 cut(s)	105, 225, 320
StyI	CCWWGG	2 cut(s)	131, 240
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	2 cut(s)	83, 456
TaqI	TCGA	2 cut(s)	138, 378
TaqII	GACCGA	1 cut(s)	550
TasI	AATT	2 cut(s)	13, 367
TauI	GCSGC	5 cut(s)	26, 56, 59, 129, 503
TfiI	GAWTC	1 cut(s)	201
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	570
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	2 cut(s)	539, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.