Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000078.1

Orthogroup ID

OG0004291

Physical Location & Seq

Genomic Coordinates Reverse (-)

165495 .. 166001

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000078.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgtcgctaaacccacccgcgggttacggcaccatcaccggcggtcaaacctcgaccaaagaccccacctttgactcgacctcccaagccgtgtaccccacgcgccgcccatggtccgagcttttctcccccgccgccttctccgtcccccaaagctacgccgacgccatgagccgcgtgaagcacaacctcagctacttccgtctcaactacgccatggtcgtgctcgtcatcgtcttcctcagcctcctatggcaccccgtctccatgatcgtcttcttgatcatcctcatctactggatcttcggttacttctcacgcgcccccggccccgtcgtcctcttcaaccggagcttcgacgacggcgccgtcctcttcgccctcagcctcctcaccgtggtggcgcttgtgctcacgcgcgtggggctgaacgtgctggtctctctggtcgtcgccgtggtcgttgtgggcctccacgccgcaaaaaaaaaaagacgacctatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

168

Amino Acids

18.52

Weight (kDa)

10.13

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08770
fragaria_vesca	FvH4_2g22330 FvH4_2g22330 FvH4_2g22330 FvH4_6g02681
malus_domestica	MD04G1225900.v1.1 MD05G1204600.v1.1 MD10G1191700.v1.1 MD12G1243000.v1.1
prunus_persica	Prupe.6G344700_v2.0.a1 Prupe.8G231200_v2.0.a1 Prupe.8G231200_v2.0.a1
pyrus_communis	pycom04g19910 pycom10g16530 pycom12g22200
rosa_chinensis	RchiOBHm_Chr3g0450661 RchiOBHm_Chr6g0289341
rosa_laevigata	RLG00000012311 RLG00000025713
rosa_multiflora	Rmu_co8063204.1_g000001 Rmu_co8227881.1_g000001 Rmu_sc0000078.1_g000036 Rmu_sc0000078.1_g000038 Rmu_sc0001527.1_g000028 Rmu_sc0005115.1_g000005
rosa_roxburghii	Rroxscaffold_6G00405210 Rroxscaffold_6G00428320
rosa_rugosa	Rorug02G0629400 Rorug06G0202900
rosa_samantha	Rh6CG327500
rosa_wichuraiana	Rw3G002320 Rw6G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AccB1I	GGYRCC	3 cut(s)	29, 255, 365
AccII	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
AciI	CCGC	8 cut(s)	18, 20, 42, 106, 132, 135, 175, 480
AclWI	GGATC	1 cut(s)	308
AcyI	GRCGYC	2 cut(s)	165, 366
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	3 cut(s)	19, 20, 397
AgsI	TTSAA	1 cut(s)	346
AleI	CACNNNNGTG	2 cut(s)	398, 419
AluBI	AGCT	4 cut(s)	121, 156, 195, 354
AluI	AGCT	4 cut(s)	121, 156, 195, 354
Alw21I	GWGCWC	2 cut(s)	228, 414
Alw26I	GTCTC	3 cut(s)	209, 268, 445
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	328, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	5 cut(s)	105, 323, 368, 406, 420
AspS9I	GGNCC	3 cut(s)	114, 329, 469
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	28, 385
AvaII	GGWCC	1 cut(s)	114
BanI	GGYRCC	3 cut(s)	29, 255, 365
BbsI	GAAGAC	2 cut(s)	229, 268
Bbv12I	GWGCWC	2 cut(s)	228, 414
BbvCI	CCTCAGC	3 cut(s)	191, 242, 383
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	5 cut(s)	43, 74, 353, 379, 440
BclI	TGATCA	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	209, 268, 445
BfoI	RGCGCY	2 cut(s)	369, 407
BisI	GCNGC	4 cut(s)	106, 135, 175, 480
BlsI	GCNGC	4 cut(s)	107, 136, 176, 481
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	3 cut(s)	114, 329, 469
BmiI	GGNNCC	4 cut(s)	31, 257, 331, 367
BmrFI	CCNGG	1 cut(s)	327
BpiI	GAAGAC	2 cut(s)	229, 268
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bpu10I	CCTNAGC	3 cut(s)	191, 242, 383
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	165, 366
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	6 cut(s)	18, 110, 216, 325, 396, 456
BsaWI	WCCGGW	1 cut(s)	348
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 248, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 20, 397
Bse118I	RCCGGY	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	302
BseDI	CCNNGG	6 cut(s)	18, 110, 216, 325, 396, 456
BseGI	GGATG	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	19, 20, 397
BseMII	CTCAG	3 cut(s)	205, 256, 397
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	380
Bsh1236I	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
BshFI	GGCC	2 cut(s)	330, 471
BshNI	GGYRCC	3 cut(s)	29, 255, 365
BsiHKAI	GWGCWC	2 cut(s)	228, 414
BsiSI	CCGG	3 cut(s)	39, 327, 349
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	19, 20, 397
BsmAI	GTCTC	3 cut(s)	209, 268, 445
BsmBI	CGTCTC	2 cut(s)	209, 268
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	330, 471
Bso31I	GGTCTC	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	228, 414
Bsp143I	GATC	3 cut(s)	270, 282, 300
Bsp19I	CCATGG	2 cut(s)	110, 216
BspACI	CCGC	8 cut(s)	18, 20, 42, 106, 132, 135, 175, 480
BspANI	GGCC	2 cut(s)	330, 471
BspCNI	CTCAG	3 cut(s)	204, 255, 396
BspFNI	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
BspLI	GGNNCC	4 cut(s)	31, 257, 331, 367
BspPI	GGATC	1 cut(s)	308
BspT107I	GGYRCC	3 cut(s)	29, 255, 365
BspTNI	GGTCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	38
BsrI	ACTGG	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	38
BssECI	CCNNGG	6 cut(s)	18, 110, 216, 325, 396, 456
BssMI	GATC	3 cut(s)	270, 282, 300
BssNI	GRCGYC	2 cut(s)	165, 366
BssT1I	CCWWGG	2 cut(s)	110, 216
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	2 cut(s)	347, 380
BstACI	GRCGYC	2 cut(s)	165, 366
BstDEI	CTNAG	3 cut(s)	191, 242, 383
BstDSI	CCRYGG	5 cut(s)	18, 110, 216, 396, 456
BstF5I	GGATG	1 cut(s)	285
BstFNI	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
BstH2I	RGCGCY	2 cut(s)	369, 407
BstHHI	GCGC	5 cut(s)	105, 323, 368, 406, 420
BstKTI	GATC	3 cut(s)	273, 285, 303
BstMAI	GTCTC	3 cut(s)	209, 268, 445
BstMBI	GATC	3 cut(s)	270, 282, 300
BstMWI	GCNNNNNNNGC	3 cut(s)	327, 424, 433
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
BstV2I	GAAGAC	2 cut(s)	229, 268
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	330, 471
BtgI	CCRYGG	5 cut(s)	18, 110, 216, 396, 456
BtsCI	GGATG	1 cut(s)	285
CfoI	GCGC	5 cut(s)	105, 323, 368, 406, 420
Cfr10I	RCCGGY	1 cut(s)	38
Cfr13I	GGNCC	3 cut(s)	114, 329, 469
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	94
CviAII	CATG	4 cut(s)	111, 169, 217, 268
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	3 cut(s)	191, 242, 383
DinI	GGCGCC	1 cut(s)	367
DpnI	GATC	3 cut(s)	272, 284, 302
DpnII	GATC	3 cut(s)	270, 282, 300
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	347, 380
EarI	CTCTTC	2 cut(s)	347, 380
Eco130I	CCWWGG	2 cut(s)	110, 216
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	110, 216
EgeI	GGCGCC	1 cut(s)	367
EheI	GGCGCC	1 cut(s)	367
ErhI	CCWWGG	2 cut(s)	110, 216
Esp3I	CGTCTC	2 cut(s)	209, 268
FaeI	CATG	4 cut(s)	114, 172, 220, 271
FaiI	YATR	7 cut(s)	112, 170, 218, 253, 269, 503, 505
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	4 cut(s)	110, 168, 216, 267
FauI	CCCGC	3 cut(s)	13, 25, 139
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	4 cut(s)	106, 135, 175, 480
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	4 cut(s)	106, 135, 175, 480
GlaI	GCGC	5 cut(s)	104, 322, 367, 405, 419
GluI	GCNGC	4 cut(s)	106, 135, 175, 480
HaeII	RGCGCY	2 cut(s)	369, 407
HaeIII	GGCC	2 cut(s)	330, 471
HapII	CCGG	3 cut(s)	39, 327, 349
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	5 cut(s)	105, 323, 368, 406, 420
Hin1I	GRCGYC	2 cut(s)	165, 366
Hin1II	CATG	4 cut(s)	114, 172, 220, 271
Hin6I	GCGC	5 cut(s)	103, 321, 366, 404, 418
HinP1I	GCGC	5 cut(s)	103, 321, 366, 404, 418
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	3 cut(s)	39, 327, 349
HphI	GGTGA	2 cut(s)	28, 385
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	5 cut(s)	167, 338, 362, 365, 455
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	327, 424, 433
HpyF3I	CTNAG	3 cut(s)	191, 242, 383
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	2 cut(s)	165, 366
Hsp92II	CATG	4 cut(s)	114, 172, 220, 271
HspAI	GCGC	5 cut(s)	103, 321, 366, 404, 418
KasI	GGCGCC	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	282
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	270, 282, 300
LmnI	GCTCC	1 cut(s)	351
LpnPI	CCDG	6 cut(s)	52, 283, 340, 362, 422, 431
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	23, 308
MalI	GATC	3 cut(s)	272, 284, 302
MboI	GATC	3 cut(s)	270, 282, 300
MboII	GAAGA	5 cut(s)	229, 268, 295, 334, 367
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	2 cut(s)	228, 414
Mly113I	GGCGCC	1 cut(s)	366
MlyI	GAGTC	1 cut(s)	68
MslI	CAYNNNNRTG	3 cut(s)	221, 398, 419
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	3 cut(s)	39, 327, 349
MspR9I	CCNGG	1 cut(s)	327
MvnI	CGCG	6 cut(s)	20, 103, 177, 321, 418, 420
MwoI	GCNNNNNNNGC	3 cut(s)	327, 424, 433
NarI	GGCGCC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	327
NcoI	CCATGG	2 cut(s)	110, 216
NdeII	GATC	3 cut(s)	270, 282, 300
NlaIII	CATG	4 cut(s)	114, 172, 220, 271
NlaIV	GGNNCC	4 cut(s)	31, 257, 331, 367
OliI	CACNNNNGTG	2 cut(s)	398, 419
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 366, 459
PkrI	GCNGC	4 cut(s)	107, 136, 176, 481
PleI	GAGTC	1 cut(s)	68
PluTI	GGCGCC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	68
PspN4I	GGNNCC	4 cut(s)	31, 257, 331, 367
PspPI	GGNCC	3 cut(s)	114, 329, 469
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	3 cut(s)	221, 398, 419
SacII	CCGCGG	1 cut(s)	21
SatI	GCNGC	4 cut(s)	106, 135, 175, 480
Sau3AI	GATC	3 cut(s)	270, 282, 300
Sau96I	GGNCC	3 cut(s)	114, 329, 469
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	228, 414
SfoI	GGCGCC	1 cut(s)	367
Sfr303I	CCGCGG	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	38
SgrBI	CCGCGG	1 cut(s)	21
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	3 cut(s)	221, 398, 419
SsiI	CCGC	8 cut(s)	18, 20, 42, 106, 132, 135, 175, 480
SspDI	GGCGCC	1 cut(s)	365
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	110, 216
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	53, 77, 357
TauI	GCSGC	4 cut(s)	108, 137, 177, 482
TspGWI	ACGGA	2 cut(s)	133, 191
VpaK11BI	GGWCC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.