AT1G09660

KH domain-containing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005725
Physical Location & Seq
Reverse (-)
3127762 .. 3131094
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09660.3

Sequence Viewer

Length: 897 bp
ATGATGGAATCTGGCGCTGGTTTCGTGGCCATGGAAGAGAGGATCTCTCCTGGAAGTTTCTTCCAGTATCCTCTTTCTGGATTCCGTGCTTCTCCTAATCGATCCCCTTGTCCTCCCTCTGATCGTGAAAGGTACTTGACTGAATTATTGCAAGAGAGACAAAAGTTGGGTCCCTTTTTGCAAGTTATGCCAAATTGCTGCAGACTGCTTAATCATGAAATCAGGAGGGTCTCTAGTTTTCCTGATCTTGATAGATATGAGCATGGCAGTCCATTTAGATCGCTTGGTCAGCCGACAAATGGAAAGCTTGATTTAGAGGGATGGTCGATGATGCAAGCCGAGGAAAACTGTCACCTCCAGAGAGCTTCTCCATTTCGCGGTCCTTCCCCAGTGGGCTGGATTGGGATGCCGGGACTCCCTAACCCACCCATTGTGAAAAAAGTGATTAGACTTGATGTCCCAGTGGATAAATATCCAAGCTATAATTTTGTTGGGAGGATTCTTGGGCCACGTGGAAACTCCCTAAAAAGAGTTGAGCTAGCAACCCACTGCAGGGTGTTTATCAGAGGACGAGGATCTGTGAAGGATACTGTCAAGGAGGAAAAATTAAAAGGTAAGCCAGGGTACGAGCATCTCTGCGAGCCACTACATGTACTGATCGAGGCCGAGCTTCCAGAAGACATAATAAACTCTCGATTGGAGCATGCAGTGCATTTCCTGGAATCACTCCTGAAGCCGATGGACGAGTCAATGGATCACTACAAGAGGGAACAGCTGAAGGAGTTAGCGGCTTTGAATGGTACACTAAGGGAGGAGAGTCCGAGTCCGAGCTTGAGCCCTTGTTTGAGCCCCAGCATGTCCCCTTTCAACAGCAAGCGTGCTAAGACAGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 STAR_dimer

Protein Analysis

298

Amino Acids

33.69

Weight (kDa)

8.42

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
STAR_dimer PF16544 42 - 79 1.4e-08 Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP PF22675 157 - 245 1.4e-18 KHDC4/BBP-like, KH-domain type I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 378, 788
AclWI GGATC 4 cut(s) 50, 96, 583, 762
AcoI YGGCCR 1 cut(s) 27
AcuI CTGAAG 2 cut(s) 752, 797
AcvI CACGTG 1 cut(s) 512
AfaI GTAC 4 cut(s) 134, 626, 654, 802
AfiI CCNNNNNNNGG 5 cut(s) 77, 299, 377, 552, 553
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 2 cut(s) 796, 868
AhdI GACNNNNNGTC 1 cut(s) 455
AjnI CCWGG 3 cut(s) 49, 619, 717
AluBI AGCT 7 cut(s) 307, 365, 480, 538, 670, 775, 831
AluI AGCT 7 cut(s) 307, 365, 480, 538, 670, 775, 831
Alw26I GTCTC 2 cut(s) 151, 235
AlwI GGATC 4 cut(s) 50, 96, 583, 762
AoxI GGCC 3 cut(s) 27, 506, 663
ApeKI GCWGC 1 cut(s) 198
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 170, 380, 506
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 538
AvaII GGWCC 2 cut(s) 170, 380
BalI TGGCCA 1 cut(s) 29
BanII GRGCYC 2 cut(s) 839, 851
BbrPI CACGTG 1 cut(s) 512
BbsI GAAGAC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 185
BccI CCATC 2 cut(s) 315, 733
BciT130I CCWGG 3 cut(s) 51, 621, 719
BciVI GTATCC 2 cut(s) 78, 580
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 2 cut(s) 151, 235
BfaI CTAG 2 cut(s) 234, 539
BfmI CTRYAG 2 cut(s) 199, 550
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 2 cut(s) 78, 580
BisI GCNGC 2 cut(s) 199, 789
BlsI GCNGC 2 cut(s) 200, 790
Bme1390I CCNGG 4 cut(s) 51, 411, 621, 719
Bme18I GGWCC 2 cut(s) 170, 380
BmeRI GACNNNNNGTC 1 cut(s) 455
BmgT120I GGNCC 3 cut(s) 170, 380, 506
BmiI GGNNCC 2 cut(s) 171, 172
BmrFI CCNGG 4 cut(s) 51, 411, 621, 719
BmrI ACTGGG 2 cut(s) 383, 455
BmsI GCATC 3 cut(s) 321, 396, 640
BmtI GCTAGC 1 cut(s) 542
BmuI ACTGGG 2 cut(s) 383, 455
BpiI GAAGAC 1 cut(s) 684
BplI GAGNNNNNCTC 6 cut(s) 29, 61, 31, 63, 352, 384
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 853
BpuMI CCSGG 1 cut(s) 411
Bsa29I ATCGAT 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 3 cut(s) 30, 339, 620
Bsc4I CCNNNNNNNGG 5 cut(s) 77, 299, 377, 552, 553
Bse1I ACTGG 3 cut(s) 64, 389, 461
Bse8I GATNNNNATC 1 cut(s) 471
BseBI CCWGG 3 cut(s) 51, 621, 719
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 3 cut(s) 30, 339, 620
BseGI GGATG 2 cut(s) 326, 411
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 5 cut(s) 77, 299, 377, 552, 553
BseNI ACTGG 3 cut(s) 64, 389, 461
BseRI GAGGAG 1 cut(s) 827
BseXI GCAGC 1 cut(s) 185
BseYI CCCAGC 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 3 cut(s) 29, 508, 665
BshVI ATCGAT 1 cut(s) 100
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 4 cut(s) 156, 426, 443, 844
BslI CCNNNNNNNGG 5 cut(s) 77, 299, 377, 552, 553
BsmAI GTCTC 2 cut(s) 151, 235
BsmFI GGGAC 4 cut(s) 156, 426, 443, 844
BsnI GGCC 3 cut(s) 29, 508, 665
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 839, 851
Bsp143I GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 378, 788
BspANI GGCC 3 cut(s) 29, 508, 665
BspDI ATCGAT 1 cut(s) 100
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 171, 172
BspMAI CTGCAG 2 cut(s) 203, 554
BspOI GCTAGC 1 cut(s) 542
BspPI GGATC 4 cut(s) 50, 96, 583, 762
BspTNI GGTCTC 1 cut(s) 235
BsrI ACTGG 3 cut(s) 64, 389, 461
BssECI CCNNGG 3 cut(s) 30, 339, 620
BssMI GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 3 cut(s) 51, 621, 719
Bst4CI ACNGT 2 cut(s) 350, 592
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 2 cut(s) 187, 709
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 6 cut(s) 336, 540, 641, 705, 875, 879
BstDEI CTNAG 2 cut(s) 806, 882
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 326, 411
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 8 cut(s) 45, 104, 124, 247, 281, 578, 660, 757
BstMAI GTCTC 2 cut(s) 151, 235
BstMBI GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
BstMWI GCNNNNNNNGC 3 cut(s) 187, 289, 709
BstNI CCWGG 3 cut(s) 51, 621, 719
BstNSI RCATGY 3 cut(s) 653, 707, 859
BstSCI CCNGG 4 cut(s) 49, 409, 619, 717
BstSFI CTRYAG 2 cut(s) 199, 550
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 185
BstV2I GAAGAC 1 cut(s) 684
BstX2I RGATCY 2 cut(s) 42, 575
BstXI CCANNNNNNTGG 1 cut(s) 396
BstYI RGATCY 2 cut(s) 42, 575
Bsu15I ATCGAT 1 cut(s) 100
BsuI GTATCC 2 cut(s) 78, 580
BsuRI GGCC 3 cut(s) 29, 508, 665
BsuTUI ATCGAT 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 326, 411
BtsI GCAGTG 2 cut(s) 547, 714
BtsIMutI CAGTG 4 cut(s) 396, 468, 547, 714
Cac8I GCNNGC 6 cut(s) 336, 540, 641, 705, 875, 879
CciI TCATGA 1 cut(s) 214
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 3 cut(s) 170, 380, 506
ClaI ATCGAT 1 cut(s) 100
Csp6I GTAC 4 cut(s) 133, 625, 653, 801
CviAII CATG 6 cut(s) 31, 215, 263, 650, 704, 856
CviQI GTAC 4 cut(s) 133, 625, 653, 801
DdeI CTNAG 2 cut(s) 806, 882
DpnI GATC 8 cut(s) 44, 103, 123, 246, 280, 577, 659, 756
DpnII GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
DriI GACNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 2 cut(s) 839, 851
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 170, 380
Eco57I CTGAAG 2 cut(s) 752, 797
Eco72I CACGTG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 49, 619, 717
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 2 cut(s) 839, 851
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 6 cut(s) 34, 218, 266, 653, 707, 859
FaqI GGGAC 4 cut(s) 156, 426, 443, 844
FatI CATG 6 cut(s) 30, 214, 262, 649, 703, 855
Fnu4HI GCNGC 2 cut(s) 199, 789
FokI GGATG 2 cut(s) 333, 418
FriOI GRGCYC 2 cut(s) 839, 851
Fsp4HI GCNGC 2 cut(s) 199, 789
FspBI CTAG 2 cut(s) 234, 539
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 199, 789
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 3 cut(s) 29, 508, 665
HapII CCGG 1 cut(s) 410
HhaI GCGC 1 cut(s) 17
Hin1II CATG 6 cut(s) 34, 218, 266, 653, 707, 859
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 8 cut(s) 8, 81, 414, 499, 722, 746, 817, 823
HpaII CCGG 1 cut(s) 410
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 4 cut(s) 121, 566, 822, 828
Hpy8I GTNNAC 1 cut(s) 803
HpyAV CCTTC 3 cut(s) 393, 577, 772
HpyCH4III ACNGT 2 cut(s) 350, 592
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 7 cut(s) 151, 181, 201, 334, 552, 707, 712
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 289, 709
HpyF3I CTNAG 2 cut(s) 806, 882
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 6 cut(s) 34, 218, 266, 653, 707, 859
HspAI GCGC 1 cut(s) 15
KflI GGGWCCC 1 cut(s) 170
Kzo9I GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 185
LweI GCATC 3 cut(s) 321, 396, 640
MaeI CTAG 2 cut(s) 234, 539
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 1 cut(s) 350
MalI GATC 8 cut(s) 44, 103, 123, 246, 280, 577, 659, 756
MboI GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
MboII GAAGA 3 cut(s) 47, 52, 689
MflI RGATCY 2 cut(s) 42, 575
MhlI GDGCHC 2 cut(s) 839, 851
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 4 cut(s) 143, 193, 484, 605
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 4 cut(s) 408, 755, 826, 832
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 2 cut(s) 210, 608
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 4 cut(s) 51, 411, 621, 719
MvaI CCWGG 3 cut(s) 51, 621, 719
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 187, 289, 709
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 30
NdeII GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
NheI GCTAGC 1 cut(s) 538
NlaIII CATG 6 cut(s) 34, 218, 266, 653, 707, 859
NlaIV GGNNCC 2 cut(s) 171, 172
NmeAIII GCCGAG 2 cut(s) 364, 691
NmuCI GTSAC 1 cut(s) 350
NspI RCATGY 3 cut(s) 653, 707, 859
PaeI GCATGC 1 cut(s) 707
PagI TCATGA 1 cut(s) 214
PciI ACATGT 1 cut(s) 649
PfeI GAWTC 4 cut(s) 8, 81, 499, 722
PfoI TCCNGGA 2 cut(s) 49, 717
PkrI GCNGC 2 cut(s) 200, 790
PleI GAGTC 4 cut(s) 408, 754, 825, 831
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
PpsI GAGTC 4 cut(s) 408, 754, 825, 831
Ppu21I YACGTR 1 cut(s) 512
PpuMI RGGWCCY 1 cut(s) 170
PscI ACATGT 1 cut(s) 649
Psp5II RGGWCCY 1 cut(s) 170
Psp6I CCWGG 3 cut(s) 49, 619, 717
PspCI CACGTG 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 3 cut(s) 49, 619, 717
PspN4I GGNNCC 2 cut(s) 171, 172
PspPI GGNCC 3 cut(s) 170, 380, 506
PspPPI RGGWCCY 1 cut(s) 170
PstI CTGCAG 2 cut(s) 203, 554
PsuI RGATCY 2 cut(s) 42, 575
PvuII CAGCTG 1 cut(s) 775
RsaI GTAC 4 cut(s) 134, 626, 654, 802
RsaNI GTAC 4 cut(s) 133, 625, 653, 801
SaqAI TTAA 2 cut(s) 210, 608
SatI GCNGC 2 cut(s) 199, 789
Sau3AI GATC 8 cut(s) 42, 101, 121, 244, 278, 575, 657, 754
Sau96I GGNCC 3 cut(s) 170, 380, 506
SchI GAGTC 4 cut(s) 408, 755, 826, 832
ScrFI CCNGG 4 cut(s) 51, 411, 621, 719
SduI GDGCHC 2 cut(s) 839, 851
SfaNI GCATC 3 cut(s) 321, 396, 640
SfcI CTRYAG 2 cut(s) 199, 550
SinI GGWCC 2 cut(s) 170, 380
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
SphI GCATGC 1 cut(s) 707
Sse9I AATT 4 cut(s) 143, 193, 484, 605
SsiI CCGC 2 cut(s) 378, 788
SspMI CTAG 2 cut(s) 234, 539
StyD4I CCNGG 4 cut(s) 49, 409, 619, 717
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 350, 592
TaiI ACGT 1 cut(s) 514
TaqI TCGA 4 cut(s) 100, 326, 660, 694
TasI AATT 4 cut(s) 143, 193, 484, 605
TatI WGTACW 1 cut(s) 652
TauI GCSGC 1 cut(s) 791
TfiI GAWTC 4 cut(s) 8, 81, 499, 722
Tru1I TTAA 2 cut(s) 210, 608
Tru9I TTAA 2 cut(s) 210, 608
TscAI CASTG 4 cut(s) 396, 468, 554, 714
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 4 cut(s) 396, 468, 554, 714
VpaK11BI GGWCC 2 cut(s) 170, 380
XceI RCATGY 3 cut(s) 653, 707, 859
XspI CTAG 2 cut(s) 234, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.