Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

47247670 .. 47253487

Gene Structure 5818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G581200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCTGTGTGTTTTCATCAGAGCGGATTCTATTCGCTTGTCAAGATATTTACTTTATTGTAGTTCTTGTGTGATGGGAGAGAGAATTCCCTCTGGGAGTTACTTCCAGTACCCACCTCCTGGAGTCCATGCTTCTCCACACAGGTCTTCTCTCCCTGTAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTCATGCAAATTTTGCCCCTATGTAGCAGACTTCTAAATCACGAAATCAGACGGGTGTCAGGCTTCAATCAAACTCTTGTAGATCATGAAAGACTTGAGCATGAGAGTCCATTTAGGACATTAAGTCAAAACGCAAATGGTAGACCAATGGATTTGGAGGGATGGCCAGGAATGCAAATGGAGGAAAATGGACATATACAGAGAATGGCCCCGTTTCAATCTCCTTCTATGGGCTGGCCTGGGGTGCAAGGAATTCCAGCCACTCCTGTTGTAAAGAGAGTAATTAGACTTGACGTTCCAGTGGACAAATATCCACATTACAATTTTGTTGGCAGAATTTTGGGACCACGTGGGAACTCCTTAAAAAGAGTTGAAGCGATGACAGAGTGTAGGGTTTACATCCGAGGTCGGGGCTCTGTGAAGGATTCTGTAAAGGAAGAGAAATTAAAAGAAAAGCCCGGATATGAACATCTTAATGAGCCATTGCATGTATTGGTGGAGGCTGAATTTCCTGAGGATATAATCAATGCGCGATTGGATCATGCAGTGGCAATACTAGAAAACCTTCTGAAGCCTGTGGACGAGTCCTTCGATCACTATAAGAAGCAACAGCTTAGAGAATTGGCTATGCTAAACGGTACATTGAGGGAAGAGAGTCCGAGTATGAGCCCAAGTATAAGCCCTAGCATGTCACCATTTAACAGTACAGGAATGAAACGAGCCAAAACAGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

317

Amino Acids

35.93

Weight (kDa)

8.89

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccBSI	CCGCTC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	745
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	759
AcoI	YGGCCR	1 cut(s)	377
AcsI	RAATTY	5 cut(s)	84, 222, 465, 549, 719
AcuI	CTGAAG	1 cut(s)	803
AcvI	CACGTG	1 cut(s)	563
AfaI	GTAC	3 cut(s)	110, 853, 919
AfiI	CCNNNNNNNGG	3 cut(s)	119, 443, 622
AgsI	TTSAA	3 cut(s)	280, 431, 587
AhdI	GACNNNNNGTC	1 cut(s)	336
AjnI	CCWGG	3 cut(s)	118, 379, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	826
AluI	AGCT	1 cut(s)	826
AlwI	GGATC	1 cut(s)	759
AoxI	GGCC	3 cut(s)	377, 420, 449
ApoI	RAATTY	5 cut(s)	84, 222, 465, 549, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	3 cut(s)	209, 421, 557
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	1 cut(s)	897
AvaII	GGWCC	2 cut(s)	209, 557
AxyI	CCTNAGG	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	379
BanII	GRGCYC	2 cut(s)	629, 884
BbrPI	CACGTG	1 cut(s)	563
BbsI	GAAGAC	1 cut(s)	138
BccI	CCATC	2 cut(s)	67, 369
BciT130I	CCWGG	3 cut(s)	120, 381, 453
BcnI	CCSGG	1 cut(s)	672
BfaI	CTAG	3 cut(s)	188, 770, 897
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	4 cut(s)	120, 381, 453, 672
Bme18I	GGWCC	2 cut(s)	209, 557
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	3 cut(s)	209, 421, 557
BmiI	GGNNCC	3 cut(s)	210, 423, 558
BmrFI	CCNGG	4 cut(s)	120, 381, 453, 672
BoxI	GACNNNNGTC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	452, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	119, 443, 622
Bse1I	ACTGG	2 cut(s)	106, 512
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	695
BseBI	CCWGG	3 cut(s)	120, 381, 453
BseDI	CCNNGG	2 cut(s)	452, 616
BseGI	GGATG	2 cut(s)	380, 612
BseLI	CCNNNNNNNGG	3 cut(s)	119, 443, 622
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	1 cut(s)	717
BseNI	ACTGG	2 cut(s)	106, 512
Bsh1236I	CGCG	1 cut(s)	745
BshFI	GGCC	3 cut(s)	379, 422, 451
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	2 cut(s)	222, 570
BslI	CCNNNNNNNGG	3 cut(s)	119, 443, 622
BsmFI	GGGAC	2 cut(s)	222, 570
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	3 cut(s)	379, 422, 451
Bsp1286I	GDGCHC	2 cut(s)	629, 884
Bsp143I	GATC	4 cut(s)	160, 295, 751, 805
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	3 cut(s)	379, 422, 451
BspCNI	CTCAG	1 cut(s)	718
BspFNI	CGCG	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	210, 423, 558
BspPI	GGATC	1 cut(s)	759
BsrBI	CCGCTC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	106, 512
BssECI	CCNNGG	2 cut(s)	452, 616
BssMI	GATC	4 cut(s)	160, 295, 751, 805
Bst2UI	CCWGG	3 cut(s)	120, 381, 453
Bst4CI	ACNGT	2 cut(s)	851, 917
Bst6I	CTCTTC	2 cut(s)	645, 858
BstAPI	GCANNNNNTGC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	449
BstDEI	CTNAG	2 cut(s)	726, 827
BstF5I	GGATG	2 cut(s)	380, 612
BstFNI	CGCG	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	4 cut(s)	163, 298, 754, 808
BstMBI	GATC	4 cut(s)	160, 295, 751, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 385, 457
BstNI	CCWGG	3 cut(s)	120, 381, 453
BstNSI	RCATGY	2 cut(s)	704, 904
BstPAI	GACNNNNGTC	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	118, 379, 451, 670
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	745
BstV2I	GAAGAC	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	379, 422, 451
BtgZI	GCGATG	1 cut(s)	605
BtsCI	GGATG	2 cut(s)	380, 612
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	2 cut(s)	519, 765
Cac8I	GCNNGC	1 cut(s)	449
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	3 cut(s)	209, 421, 557
Csp6I	GTAC	3 cut(s)	109, 852, 918
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	7 cut(s)	128, 217, 299, 314, 701, 755, 901
CviQI	GTAC	3 cut(s)	109, 852, 918
DdeI	CTNAG	2 cut(s)	726, 827
DpnI	GATC	4 cut(s)	162, 297, 753, 807
DpnII	GATC	4 cut(s)	160, 295, 751, 805
DriI	GACNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	377
Eam1104I	CTCTTC	2 cut(s)	645, 858
Eam1105I	GACNNNNNGTC	1 cut(s)	336
EarI	CTCTTC	2 cut(s)	645, 858
Eco24I	GRGCYC	2 cut(s)	629, 884
Eco47I	GGWCC	2 cut(s)	209, 557
Eco57I	CTGAAG	1 cut(s)	803
Eco72I	CACGTG	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	726
EcoRI	GAATTC	2 cut(s)	84, 465
EcoRII	CCWGG	3 cut(s)	118, 379, 451
EcoT38I	GRGCYC	2 cut(s)	629, 884
FaeI	CATG	7 cut(s)	131, 220, 302, 317, 704, 758, 904
FaqI	GGGAC	2 cut(s)	222, 570
FatI	CATG	7 cut(s)	127, 216, 298, 313, 700, 754, 900
FblI	GTMKAC	1 cut(s)	355
FokI	GGATG	2 cut(s)	387, 599
FriOI	GRGCYC	2 cut(s)	629, 884
FspBI	CTAG	3 cut(s)	188, 770, 897
GlaI	GCGC	1 cut(s)	744
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	379, 422, 451
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	1 cut(s)	745
Hin1II	CATG	7 cut(s)	131, 220, 302, 317, 704, 758, 904
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HinfI	GANTC	6 cut(s)	26, 123, 319, 638, 797, 868
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	1 cut(s)	897
Hpy166II	GTNNAC	4 cut(s)	356, 517, 610, 793
Hpy188I	TCNGA	5 cut(s)	20, 263, 617, 783, 873
Hpy188III	TCNNGA	5 cut(s)	42, 164, 254, 299, 725
Hpy8I	GTNNAC	4 cut(s)	356, 517, 610, 793
HpyAV	CCTTC	4 cut(s)	447, 628, 788, 811
HpyCH4III	ACNGT	2 cut(s)	851, 917
HpyCH4IV	ACGT	2 cut(s)	507, 562
HpyCH4V	TGCA	5 cut(s)	220, 388, 460, 700, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 385, 457
HpyF3I	CTNAG	2 cut(s)	726, 827
HpySE526I	ACGT	2 cut(s)	507, 562
Hsp92II	CATG	7 cut(s)	131, 220, 302, 317, 704, 758, 904
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	4 cut(s)	160, 295, 751, 805
MaeI	CTAG	3 cut(s)	188, 770, 897
MaeII	ACGT	2 cut(s)	507, 562
MaeIII	GTNAC	2 cut(s)	98, 903
MalI	GATC	4 cut(s)	162, 297, 753, 807
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	4 cut(s)	160, 295, 751, 805
MboII	GAAGA	3 cut(s)	138, 662, 875
MhlI	GDGCHC	2 cut(s)	629, 884
MlsI	TGGCCA	1 cut(s)	379
MluCI	AATT	9 cut(s)	84, 222, 465, 495, 535, 549, 656, 719, 833
MluNI	TGGCCA	1 cut(s)	379
MlyI	GAGTC	4 cut(s)	132, 328, 806, 877
MnlI	CCTC	8 cut(s)	100, 126, 364, 388, 611, 706, 721, 852
Mox20I	TGGCCA	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	379
MseI	TTAA	5 cut(s)	335, 575, 659, 687, 912
MslI	CAYNNNNRTG	1 cut(s)	687
Msp20I	TGGCCA	1 cut(s)	379
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	4 cut(s)	120, 381, 453, 672
Mva1269I	GAATGC	1 cut(s)	390
MvaI	CCWGG	3 cut(s)	120, 381, 453
MvnI	CGCG	1 cut(s)	745
MwoI	GCNNNNNNNGC	3 cut(s)	226, 385, 457
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	4 cut(s)	160, 295, 751, 805
NlaIII	CATG	7 cut(s)	131, 220, 302, 317, 704, 758, 904
NlaIV	GGNNCC	3 cut(s)	210, 423, 558
NmuCI	GTSAC	1 cut(s)	903
NspI	RCATGY	2 cut(s)	704, 904
PagI	TCATGA	1 cut(s)	298
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	2 cut(s)	26, 638
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	118
PleI	GAGTC	4 cut(s)	131, 327, 805, 876
PmaCI	CACGTG	1 cut(s)	563
PmlI	CACGTG	1 cut(s)	563
PpsI	GAGTC	4 cut(s)	131, 327, 805, 876
Ppu21I	YACGTR	1 cut(s)	563
PshAI	GACNNNNGTC	1 cut(s)	268
Psp6I	CCWGG	3 cut(s)	118, 379, 451
PspCI	CACGTG	1 cut(s)	563
PspGI	CCWGG	3 cut(s)	118, 379, 451
PspN4I	GGNNCC	3 cut(s)	210, 423, 558
PspPI	GGNCC	3 cut(s)	209, 421, 557
RsaI	GTAC	3 cut(s)	110, 853, 919
RsaNI	GTAC	3 cut(s)	109, 852, 918
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	5 cut(s)	335, 575, 659, 687, 912
Sau3AI	GATC	4 cut(s)	160, 295, 751, 805
Sau96I	GGNCC	3 cut(s)	209, 421, 557
SchI	GAGTC	4 cut(s)	132, 328, 806, 877
ScrFI	CCNGG	4 cut(s)	120, 381, 453, 672
SduI	GDGCHC	2 cut(s)	629, 884
SetI	ASST	7 cut(s)	118, 146, 510, 565, 622, 780, 828
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	209, 557
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	9 cut(s)	84, 222, 465, 495, 535, 549, 656, 719, 833
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	3 cut(s)	188, 770, 897
StyD4I	CCNGG	4 cut(s)	118, 379, 451, 670
TaaI	ACNGT	2 cut(s)	851, 917
TaiI	ACGT	2 cut(s)	510, 565
TaqI	TCGA	2 cut(s)	163, 804
TasI	AATT	9 cut(s)	84, 222, 465, 495, 535, 549, 656, 719, 833
TatI	WGTACW	1 cut(s)	917
TfiI	GAWTC	2 cut(s)	26, 638
Tru1I	TTAA	5 cut(s)	335, 575, 659, 687, 912
Tru9I	TTAA	5 cut(s)	335, 575, 659, 687, 912
TscAI	CASTG	2 cut(s)	519, 765
TseFI	GTSAC	1 cut(s)	903
Tsp45I	GTSAC	1 cut(s)	903
TspDTI	ATGAA	5 cut(s)	4, 205, 315, 693, 941
TspRI	CASTG	2 cut(s)	519, 765
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	209, 557
XapI	RAATTY	5 cut(s)	84, 222, 465, 549, 719
XceI	RCATGY	2 cut(s)	704, 904
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	3 cut(s)	188, 770, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.