Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

30917883 .. 30924073

Gene Structure 6191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1243900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCTTTATCGTAGTGCCTGTGTTATGGGAGAGAGAATCCCTCCTGGAAGTTACTTCCAGTACCCACCTCCTGGTGTCCATGCTTCTCCACACAGGTCTTCTTTCCCTGCAGATCGAGAGAGATATTTGGCTGAACTACTGGCAGAGAAGCATAAGTTGGGACCATTCCTGCAAATATTGCCCCTATGTAGCAGACTTCTAAATCATGAGATCAGACAAATATCAGGCTTCAATCAAACTCCTGCAGATCGTGAAAGATTTACGCATGAGAGTCCATTTAGGTCATCAAGTCAAAATGCGAATGGTAGACCAATGGATCTGGAGGGATGGCCAGGAATACACATGGAGGACAATGGACATATCCAGAGAATGGCCCCGTTTCAATCTCCTTCTATGGGATGGCTTGGGGGGCAAGGAATTCCAACCACCCCTATTGTAAAGAGAGTTATTAGACTTGATCTTCCCGTGGACAAATATCCACATTACAATTTTGTTGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAGTGTAGGGTGTACATCCGAGGCCGGGGCTCAGTGAAGGATTCTGGAAAGGAAGAGAAATTAAAAGAGGAGCCTGGATATGAACATCTTAATGAGCCGTTGCACGTGTTGGTGGAGGCTGAATTTCCGGAGGATATAATCAATGCTCGCTTGGATCATGCAGTGGCAATACTTGAGAACCTTCTGAAGCCTGTGGACGAGTCCTTCGATCACTATAAGAAGCAACAACTTAGAGAATTGGCTATGCTGAACGGTACACTGAGGGAAGAGAGCCCTAGCATGAGCCCAAGTCTAAGCCCGAGCATGTCGCCCTTCAACAGTACAGGGATGAAACGAGCCAAGACAGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

301

Amino Acids

33.93

Weight (kDa)

8.67

Isoelectric Point (pI)

63.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	40 - 75	2.7e-08	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	158 - 246	4.2e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	71, 370
AccI	GTMKAC	1 cut(s)	307
AccIII	TCCGGA	1 cut(s)	676
AclWI	GGATC	2 cut(s)	324, 711
AcoI	YGGCCR	2 cut(s)	329, 496
AcsI	RAATTY	3 cut(s)	417, 501, 671
AcuI	CTGAAG	1 cut(s)	755
AcvI	CACGTG	2 cut(s)	515, 655
AfaI	GTAC	4 cut(s)	62, 563, 805, 871
AfiI	CCNNNNNNNGG	6 cut(s)	71, 370, 395, 505, 574, 894
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	4 cut(s)	232, 383, 539, 865
AjnI	CCWGG	4 cut(s)	43, 70, 331, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AlwI	GGATC	2 cut(s)	324, 711
Ama87I	CYCGRG	1 cut(s)	847
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	4 cut(s)	329, 372, 496, 571
ApoI	RAATTY	3 cut(s)	417, 501, 671
ArsI	GACNNNNNNTTYG	2 cut(s)	737, 769
AspS9I	GGNCC	3 cut(s)	161, 373, 509
AsuC2I	CCSGG	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	847
AvaII	GGWCC	2 cut(s)	161, 509
BalI	TGGCCA	1 cut(s)	331
BanII	GRGCYC	3 cut(s)	581, 824, 836
BbrPI	CACGTG	2 cut(s)	515, 655
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	2 cut(s)	321, 393
BceAI	ACGGC	1 cut(s)	631
BciT130I	CCWGG	4 cut(s)	45, 72, 333, 624
BcnI	CCSGG	1 cut(s)	575
BfaI	CTAG	1 cut(s)	825
BfmI	CTRYAG	2 cut(s)	108, 243
Bme1390I	CCNGG	5 cut(s)	45, 72, 333, 575, 624
Bme18I	GGWCC	2 cut(s)	161, 509
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	3 cut(s)	161, 373, 509
BmiI	GGNNCC	4 cut(s)	162, 375, 510, 621
BmrFI	CCNGG	5 cut(s)	45, 72, 333, 575, 624
BpiI	GAAGAC	1 cut(s)	90
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	575
BsaAI	YACGTR	2 cut(s)	515, 655
BsaJI	CCNNGG	3 cut(s)	465, 568, 574
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	6 cut(s)	71, 370, 395, 505, 574, 894
Bse1I	ACTGG	2 cut(s)	58, 144
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	4 cut(s)	45, 72, 333, 624
BseDI	CCNNGG	3 cut(s)	465, 568, 574
BseGI	GGATG	4 cut(s)	332, 404, 564, 882
BseLI	CCNNNNNNNGG	6 cut(s)	71, 370, 395, 505, 574, 894
BseMII	CTCAG	2 cut(s)	594, 800
BseNI	ACTGG	2 cut(s)	58, 144
BseRI	GAGGAG	1 cut(s)	632
BshFI	GGCC	4 cut(s)	331, 374, 498, 573
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	2 cut(s)	574, 677
BslFI	GGGAC	2 cut(s)	174, 522
BslI	CCNNNNNNNGG	6 cut(s)	71, 370, 395, 505, 574, 894
BsmFI	GGGAC	2 cut(s)	174, 522
BsnI	GGCC	4 cut(s)	331, 374, 498, 573
BsoBI	CYCGRG	1 cut(s)	847
Bsp1286I	GDGCHC	3 cut(s)	581, 824, 836
Bsp13I	TCCGGA	1 cut(s)	676
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
BspANI	GGCC	4 cut(s)	331, 374, 498, 573
BspCNI	CTCAG	2 cut(s)	593, 801
BspEI	TCCGGA	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	162, 375, 510, 621
BspMAI	CTGCAG	2 cut(s)	112, 247
BspPI	GGATC	2 cut(s)	324, 711
BsrGI	TGTACA	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	58, 144
BssECI	CCNNGG	3 cut(s)	465, 568, 574
BssMI	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
Bst2UI	CCWGG	4 cut(s)	45, 72, 333, 624
Bst4CI	ACNGT	2 cut(s)	803, 869
Bst6I	CTCTTC	2 cut(s)	597, 810
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstAUI	TGTACA	1 cut(s)	561
BstBAI	YACGTR	2 cut(s)	515, 655
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	4 cut(s)	580, 779, 809, 842
BstDSI	CCRYGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	332, 404, 564, 882
BstKTI	GATC	7 cut(s)	115, 213, 250, 319, 460, 706, 760
BstMBI	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 409
BstNI	CCWGG	4 cut(s)	45, 72, 333, 624
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	5 cut(s)	43, 70, 331, 573, 622
BstSFI	CTRYAG	2 cut(s)	108, 243
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	4 cut(s)	331, 374, 498, 573
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	4 cut(s)	332, 404, 564, 882
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	3 cut(s)	588, 717, 806
Cac8I	GCNNGC	1 cut(s)	697
CciI	TCATGA	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	161, 373, 509
Csp6I	GTAC	4 cut(s)	61, 562, 804, 870
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	8 cut(s)	80, 206, 266, 343, 544, 707, 829, 853
CviQI	GTAC	4 cut(s)	61, 562, 804, 870
DdeI	CTNAG	4 cut(s)	580, 779, 809, 842
DpnI	GATC	7 cut(s)	114, 212, 249, 318, 459, 705, 759
DpnII	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
EaeI	YGGCCR	2 cut(s)	329, 496
Eam1104I	CTCTTC	2 cut(s)	597, 810
EarI	CTCTTC	2 cut(s)	597, 810
Eco24I	GRGCYC	3 cut(s)	581, 824, 836
Eco47I	GGWCC	2 cut(s)	161, 509
Eco57I	CTGAAG	1 cut(s)	755
Eco72I	CACGTG	2 cut(s)	515, 655
Eco88I	CYCGRG	1 cut(s)	847
EcoRI	GAATTC	1 cut(s)	417
EcoRII	CCWGG	4 cut(s)	43, 70, 331, 622
EcoT38I	GRGCYC	3 cut(s)	581, 824, 836
FaeI	CATG	8 cut(s)	83, 209, 269, 346, 547, 710, 832, 856
FaqI	GGGAC	2 cut(s)	174, 522
FatI	CATG	8 cut(s)	79, 205, 265, 342, 543, 706, 828, 852
FblI	GTMKAC	1 cut(s)	307
FokI	GGATG	4 cut(s)	339, 411, 551, 889
FriOI	GRGCYC	3 cut(s)	581, 824, 836
FspBI	CTAG	1 cut(s)	825
GsuI	CTGGAG	1 cut(s)	341
HaeIII	GGCC	4 cut(s)	331, 374, 498, 573
HapII	CCGG	2 cut(s)	574, 677
Hin1II	CATG	8 cut(s)	83, 209, 269, 346, 547, 710, 832, 856
HinfI	GANTC	4 cut(s)	36, 271, 590, 749
HpaII	CCGG	2 cut(s)	574, 677
Hpy166II	GTNNAC	5 cut(s)	308, 469, 562, 745, 806
Hpy188I	TCNGA	3 cut(s)	215, 569, 735
Hpy188III	TCNNGA	7 cut(s)	116, 206, 251, 320, 364, 594, 677
Hpy8I	GTNNAC	5 cut(s)	308, 469, 562, 745, 806
HpyAV	CCTTC	5 cut(s)	399, 580, 740, 763, 871
HpyCH4III	ACNGT	2 cut(s)	803, 869
HpyCH4IV	ACGT	2 cut(s)	514, 654
HpyCH4V	TGCA	5 cut(s)	110, 172, 245, 652, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 409
HpyF3I	CTNAG	4 cut(s)	580, 779, 809, 842
HpySE526I	ACGT	2 cut(s)	514, 654
Hsp92II	CATG	8 cut(s)	83, 209, 269, 346, 547, 710, 832, 856
Kpn2I	TCCGGA	1 cut(s)	676
Kzo9I	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
LmnI	GCTCC	1 cut(s)	619
MaeI	CTAG	1 cut(s)	825
MaeII	ACGT	2 cut(s)	514, 654
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	7 cut(s)	114, 212, 249, 318, 459, 705, 759
MboI	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
MboII	GAAGA	4 cut(s)	90, 452, 614, 827
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	3 cut(s)	581, 824, 836
MlsI	TGGCCA	1 cut(s)	331
MluCI	AATT	6 cut(s)	417, 487, 501, 608, 671, 785
MluNI	TGGCCA	1 cut(s)	331
MlyI	GAGTC	2 cut(s)	280, 758
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	9 cut(s)	51, 78, 316, 340, 563, 610, 658, 673, 804
Mox20I	TGGCCA	1 cut(s)	331
MroI	TCCGGA	1 cut(s)	676
MscI	TGGCCA	1 cut(s)	331
MseI	TTAA	2 cut(s)	611, 639
MslI	CAYNNNNRTG	1 cut(s)	639
Msp20I	TGGCCA	1 cut(s)	331
MspI	CCGG	2 cut(s)	574, 677
MspR9I	CCNGG	5 cut(s)	45, 72, 333, 575, 624
MvaI	CCWGG	4 cut(s)	45, 72, 333, 624
MwoI	GCNNNNNNNGC	2 cut(s)	178, 409
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
NlaIII	CATG	8 cut(s)	83, 209, 269, 346, 547, 710, 832, 856
NlaIV	GGNNCC	4 cut(s)	162, 375, 510, 621
NspI	RCATGY	1 cut(s)	856
PagI	TCATGA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PfeI	GAWTC	2 cut(s)	36, 590
PflMI	CCANNNNNTGG	2 cut(s)	71, 370
PfoI	TCCNGGA	1 cut(s)	43
PleI	GAGTC	2 cut(s)	279, 757
PmaCI	CACGTG	2 cut(s)	515, 655
PmlI	CACGTG	2 cut(s)	515, 655
PpsI	GAGTC	2 cut(s)	279, 757
Ppu21I	YACGTR	2 cut(s)	515, 655
Psp6I	CCWGG	4 cut(s)	43, 70, 331, 622
PspCI	CACGTG	2 cut(s)	515, 655
PspGI	CCWGG	4 cut(s)	43, 70, 331, 622
PspN4I	GGNNCC	4 cut(s)	162, 375, 510, 621
PspPI	GGNCC	3 cut(s)	161, 373, 509
PstI	CTGCAG	2 cut(s)	112, 247
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	4 cut(s)	62, 563, 805, 871
RsaNI	GTAC	4 cut(s)	61, 562, 804, 870
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	611, 639
Sau3AI	GATC	7 cut(s)	112, 210, 247, 316, 457, 703, 757
Sau96I	GGNCC	3 cut(s)	161, 373, 509
SchI	GAGTC	2 cut(s)	280, 758
ScrFI	CCNGG	5 cut(s)	45, 72, 333, 575, 624
SduI	GDGCHC	3 cut(s)	581, 824, 836
SetI	ASST	6 cut(s)	70, 98, 284, 517, 657, 732
SfcI	CTRYAG	2 cut(s)	108, 243
SinI	GGWCC	2 cut(s)	161, 509
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	6 cut(s)	417, 487, 501, 608, 671, 785
SspI	AATATT	1 cut(s)	177
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	5 cut(s)	43, 70, 331, 573, 622
TaaI	ACNGT	2 cut(s)	803, 869
TaiI	ACGT	2 cut(s)	517, 657
TaqI	TCGA	2 cut(s)	115, 756
TasI	AATT	6 cut(s)	417, 487, 501, 608, 671, 785
TatI	WGTACW	2 cut(s)	561, 869
TfiI	GAWTC	2 cut(s)	36, 590
Tru1I	TTAA	2 cut(s)	611, 639
Tru9I	TTAA	2 cut(s)	611, 639
TscAI	CASTG	3 cut(s)	588, 717, 813
TspDTI	ATGAA	2 cut(s)	645, 893
TspRI	CASTG	3 cut(s)	588, 717, 813
Van91I	CCANNNNNTGG	2 cut(s)	71, 370
VpaK11BI	GGWCC	2 cut(s)	161, 509
XapI	RAATTY	3 cut(s)	417, 501, 671
XceI	RCATGY	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.