Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Reverse (-)

38839858 .. 38843421

Gene Structure 3564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTTATGTTATGTTAATATTATCTCAATCAATCATTTTTCTCAACTGGTTTTGTTTATGTTAACAGCAAGTGGTCGAAATTGTGTGATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCACTCCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGGTTTTGCCGCTATGTAGCAGACTTCTAAGTCATGAGATCAGAAGGGTGTCGGGATTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTAAAAGAAAAGCCTGGATATGAACATCTTAATGAACCGTTGCATGTGTTGGTGGAGGCTGAATTTCCCGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATGCTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCAAGTCTAAGCCCAAGCATGTCACCCTTTAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

322

Amino Acids

36.42

Weight (kDa)

8.77

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	63 - 106	1.9e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	180 - 268	1.1e-20	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	267
Acc36I	ACCTGC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	373
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	4 cut(s)	99, 483, 567, 737
AcvI	CACGTG	1 cut(s)	581
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	2 cut(s)	871, 937
AfiI	CCNNNNNNNGG	4 cut(s)	134, 436, 571, 640
AgsI	TTSAA	3 cut(s)	298, 449, 605
AjnI	CCWGG	3 cut(s)	106, 469, 688
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AluBI	AGCT	2 cut(s)	844, 857
AluI	AGCT	2 cut(s)	844, 857
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	2 cut(s)	467, 562
ApoI	RAATTY	4 cut(s)	99, 483, 567, 737
Asp700I	GAANNNNTTC	1 cut(s)	643
AspS9I	GGNCC	3 cut(s)	227, 439, 575
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	915
AvaII	GGWCC	3 cut(s)	227, 439, 575
BanII	GRGCYC	2 cut(s)	890, 902
BbrPI	CACGTG	1 cut(s)	581
BbvCI	CCTCAGC	1 cut(s)	845
BccI	CCATC	4 cut(s)	82, 387, 430, 454
BciT130I	CCWGG	3 cut(s)	108, 471, 690
BciVI	GTATCC	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	206, 788
BfuAI	ACCTGC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	4 cut(s)	108, 135, 471, 690
Bme18I	GGWCC	3 cut(s)	227, 439, 575
BmgT120I	GGNCC	3 cut(s)	227, 439, 575
BmiI	GGNNCC	3 cut(s)	228, 441, 576
BmrFI	CCNGG	4 cut(s)	108, 135, 471, 690
BmsI	GCATC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	88, 120
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	845
BpuEI	CTTGAG	2 cut(s)	347, 785
BpuMI	CCSGG	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	107, 470, 634
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 436, 571, 640
Bse1I	ACTGG	2 cut(s)	51, 121
BseBI	CCWGG	3 cut(s)	108, 471, 690
BseDI	CCNNGG	3 cut(s)	107, 470, 634
BseGI	GGATG	3 cut(s)	398, 441, 817
BseLI	CCNNNNNNNGG	4 cut(s)	134, 436, 571, 640
BseMII	CTCAG	1 cut(s)	836
BseNI	ACTGG	2 cut(s)	51, 121
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	469, 564
BsiSI	CCGG	2 cut(s)	135, 530
BslFI	GGGAC	4 cut(s)	125, 240, 425, 588
BslI	CCNNNNNNNGG	4 cut(s)	134, 436, 571, 640
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	4 cut(s)	125, 240, 425, 588
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	469, 564
Bso31I	GGTCTC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	890, 902
Bsp143I	GATC	5 cut(s)	178, 276, 313, 347, 823
BspACI	CCGC	1 cut(s)	248
BspANI	GGCC	2 cut(s)	469, 564
BspCNI	CTCAG	1 cut(s)	837
BspHI	TCATGA	2 cut(s)	271, 316
BspLI	GGNNCC	3 cut(s)	228, 441, 576
BspMI	ACCTGC	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	51, 121
BssECI	CCNNGG	3 cut(s)	107, 470, 634
BssMI	GATC	5 cut(s)	178, 276, 313, 347, 823
BssNI	GRCGYC	1 cut(s)	138
Bst2UI	CCWGG	3 cut(s)	108, 471, 690
Bst4CI	ACNGT	2 cut(s)	714, 935
Bst6I	CTCTTC	2 cut(s)	663, 876
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstBAI	YACGTR	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	3 cut(s)	266, 845, 908
BstF5I	GGATG	3 cut(s)	398, 441, 817
BstKTI	GATC	5 cut(s)	181, 279, 316, 350, 826
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	5 cut(s)	178, 276, 313, 347, 823
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 475
BstNI	CCWGG	3 cut(s)	108, 471, 690
BstNSI	RCATGY	2 cut(s)	722, 922
BstSCI	CCNGG	4 cut(s)	106, 133, 469, 688
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	469, 564
BtsCI	GGATG	3 cut(s)	398, 441, 817
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
BveI	ACCTGC	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	763
CciI	TCATGA	2 cut(s)	271, 316
Cfr13I	GGNCC	3 cut(s)	227, 439, 575
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	870, 936
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	5 cut(s)	272, 317, 610, 719, 919
CviQI	GTAC	2 cut(s)	870, 936
DdeI	CTNAG	3 cut(s)	266, 845, 908
DpnI	GATC	5 cut(s)	180, 278, 315, 349, 825
DpnII	GATC	5 cut(s)	178, 276, 313, 347, 823
DrdI	GACNNNNNNGTC	1 cut(s)	267
DseDI	GACNNNNNNGTC	1 cut(s)	267
Eam1104I	CTCTTC	2 cut(s)	663, 876
EarI	CTCTTC	2 cut(s)	663, 876
Eco24I	GRGCYC	2 cut(s)	890, 902
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	3 cut(s)	227, 439, 575
Eco72I	CACGTG	1 cut(s)	581
EcoRI	GAATTC	2 cut(s)	99, 483
EcoRII	CCWGG	3 cut(s)	106, 469, 688
EcoT38I	GRGCYC	2 cut(s)	890, 902
FaeI	CATG	5 cut(s)	275, 320, 613, 722, 922
FaqI	GGGAC	4 cut(s)	125, 240, 425, 588
FatI	CATG	5 cut(s)	271, 316, 609, 718, 918
FblI	GTMKAC	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	3 cut(s)	405, 448, 824
FriOI	GRGCYC	2 cut(s)	890, 902
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	2 cut(s)	206, 788
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	469, 564
HapII	CCGG	2 cut(s)	135, 530
HgaI	GACGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	275, 320, 613, 722, 922
HincII	GTYRAC	2 cut(s)	63, 359
HindII	GTYRAC	2 cut(s)	63, 359
HinfI	GANTC	3 cut(s)	294, 656, 815
HpaI	GTTAAC	1 cut(s)	63
HpaII	CCGG	2 cut(s)	135, 530
HphI	GGTGA	1 cut(s)	915
Hpy166II	GTNNAC	4 cut(s)	63, 359, 374, 535
Hpy188I	TCNGA	2 cut(s)	281, 635
Hpy188III	TCNNGA	7 cut(s)	174, 182, 272, 291, 317, 399, 743
Hpy8I	GTNNAC	4 cut(s)	63, 359, 374, 535
HpyAV	CCTTC	5 cut(s)	180, 276, 465, 646, 806
HpyCH4III	ACNGT	2 cut(s)	714, 935
HpyCH4IV	ACGT	2 cut(s)	580, 949
HpyCH4V	TGCA	7 cut(s)	146, 238, 311, 406, 478, 718, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 475
HpyF3I	CTNAG	3 cut(s)	266, 845, 908
HpySE526I	ACGT	2 cut(s)	580, 949
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	275, 320, 613, 722, 922
KspAI	GTTAAC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	178, 276, 313, 347, 823
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	206, 788
MaeII	ACGT	2 cut(s)	580, 949
MaeIII	GTNAC	2 cut(s)	113, 921
MalI	GATC	5 cut(s)	180, 278, 315, 349, 825
MboI	GATC	5 cut(s)	178, 276, 313, 347, 823
MboII	GAAGA	3 cut(s)	680, 758, 893
MhlI	GDGCHC	2 cut(s)	890, 902
MluCI	AATT	8 cut(s)	79, 99, 483, 553, 567, 674, 737, 851
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	454, 512
MnlI	CCTC	8 cut(s)	114, 141, 382, 406, 629, 724, 840, 870
MroXI	GAANNNNTTC	1 cut(s)	643
MseI	TTAA	6 cut(s)	15, 62, 677, 705, 864, 930
MslI	CAYNNNNRTG	2 cut(s)	366, 705
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	2 cut(s)	135, 530
MspR9I	CCNGG	4 cut(s)	108, 135, 471, 690
Mva1269I	GAATGC	1 cut(s)	408
MvaI	CCWGG	3 cut(s)	108, 471, 690
MwoI	GCNNNNNNNGC	2 cut(s)	244, 475
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	178, 276, 313, 347, 823
NlaIII	CATG	5 cut(s)	275, 320, 613, 722, 922
NlaIV	GGNNCC	3 cut(s)	228, 441, 576
NmuCI	GTSAC	1 cut(s)	921
NspI	RCATGY	2 cut(s)	722, 922
PagI	TCATGA	2 cut(s)	271, 316
PctI	GAATGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	643
PfeI	GAWTC	2 cut(s)	294, 656
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	823
PmaCI	CACGTG	1 cut(s)	581
PmlI	CACGTG	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	823
Ppu21I	YACGTR	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	106, 469, 688
PspCI	CACGTG	1 cut(s)	581
PspGI	CCWGG	3 cut(s)	106, 469, 688
PspN4I	GGNNCC	3 cut(s)	228, 441, 576
PspPI	GGNCC	3 cut(s)	227, 439, 575
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	2 cut(s)	871, 937
RsaNI	GTAC	2 cut(s)	870, 936
RseI	CAYNNNNRTG	2 cut(s)	366, 705
SaqAI	TTAA	6 cut(s)	15, 62, 677, 705, 864, 930
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	5 cut(s)	178, 276, 313, 347, 823
Sau96I	GGNCC	3 cut(s)	227, 439, 575
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	4 cut(s)	108, 135, 471, 690
SduI	GDGCHC	2 cut(s)	890, 902
SetI	ASST	8 cut(s)	161, 243, 358, 583, 798, 846, 859, 952
SfaNI	GCATC	1 cut(s)	155
SinI	GGWCC	3 cut(s)	227, 439, 575
SmiMI	CAYNNNNRTG	2 cut(s)	366, 705
SmlI	CTYRAG	2 cut(s)	326, 800
SmoI	CTYRAG	2 cut(s)	326, 800
Sse9I	AATT	8 cut(s)	79, 99, 483, 553, 567, 674, 737, 851
SsiI	CCGC	1 cut(s)	248
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	206, 788
StyD4I	CCNGG	4 cut(s)	106, 133, 469, 688
TaaI	ACNGT	2 cut(s)	714, 935
TaiI	ACGT	2 cut(s)	583, 952
TaqI	TCGA	4 cut(s)	76, 181, 458, 822
TasI	AATT	8 cut(s)	79, 99, 483, 553, 567, 674, 737, 851
TatI	WGTACW	1 cut(s)	935
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	294, 656
Tru1I	TTAA	6 cut(s)	15, 62, 677, 705, 864, 930
Tru9I	TTAA	6 cut(s)	15, 62, 677, 705, 864, 930
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	921
Tsp45I	GTSAC	1 cut(s)	921
TspDTI	ATGAA	4 cut(s)	333, 711, 723, 959
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	783
Van91I	CCANNNNNTGG	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	227, 439, 575
XapI	RAATTY	4 cut(s)	99, 483, 567, 737
XceI	RCATGY	2 cut(s)	722, 922
XmiI	GTMKAC	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	643
XspI	CTAG	2 cut(s)	206, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.