Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

29544566 .. 29548648

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTGTAGGCGATGTAGTACTACTGCCTCTGGAGTGGAGGCAAGTAGTCGAAATTGTGTGATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCGCTCCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGATCAGAAGGGTGTCAGGCTTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTGAAAGAAAAACCTGGATATGAACATCTTAATGAGCCGTTGCATGTGTTGGTGGAGGCTGAATTTCCCGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATGCTTAATGGTACATTGAGGGAAGAGAGCCCAACATATGACTCATTGAAGATCATATGGCATCTCCATAATGTTGACTGTGTTGACAAGCTTACGGTTGAATTGCTTATGGTCACTTTGACGTCTCAGATGGGTCAACTGGCCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

314

Amino Acids

35.63

Weight (kDa)

6.81

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	159 - 247	1.1e-20	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	920
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccBSI	CCGCTC	1 cut(s)	139
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	1 cut(s)	137
AcsI	RAATTY	4 cut(s)	72, 420, 504, 674
AcvI	CACGTG	1 cut(s)	518
AcyI	GRCGYC	2 cut(s)	111, 917
AfaI	GTAC	2 cut(s)	19, 808
AfiI	CCNNNNNNNGG	4 cut(s)	107, 373, 508, 577
AgsI	TTSAA	6 cut(s)	235, 386, 542, 616, 844, 896
AjnI	CCWGG	3 cut(s)	79, 406, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	781, 794, 886
AluI	AGCT	3 cut(s)	781, 794, 886
Alw26I	GTCTC	2 cut(s)	138, 924
AoxI	GGCC	3 cut(s)	404, 499, 936
ApoI	RAATTY	4 cut(s)	72, 420, 504, 674
Asp700I	GAANNNNTTC	1 cut(s)	580
AspS9I	GGNCC	4 cut(s)	200, 376, 512, 937
AsuC2I	CCSGG	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	200, 376, 512
BanII	GRGCYC	1 cut(s)	827
BbrPI	CACGTG	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	782
BccI	CCATC	5 cut(s)	55, 324, 367, 391, 919
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	3 cut(s)	81, 408, 627
BciVI	GTATCC	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	138, 924
BfaI	CTAG	2 cut(s)	179, 725
BfuI	GTATCC	1 cut(s)	108
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	4 cut(s)	81, 108, 408, 627
Bme18I	GGWCC	3 cut(s)	200, 376, 512
BmgT120I	GGNCC	4 cut(s)	200, 376, 512, 937
BmiI	GGNNCC	3 cut(s)	201, 378, 513
BmrFI	CCNGG	4 cut(s)	81, 108, 408, 627
BmsI	GCATC	2 cut(s)	128, 865
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	2 cut(s)	51, 168
Bpu10I	CCTNAGC	1 cut(s)	782
BpuEI	CTTGAG	2 cut(s)	284, 722
BpuMI	CCSGG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	2 cut(s)	111, 917
BsaI	GGTCTC	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	80, 407, 571
BsaWI	WCCGGW	1 cut(s)	466
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 373, 508, 577
Bse1I	ACTGG	2 cut(s)	94, 939
BseBI	CCWGG	3 cut(s)	81, 408, 627
BseDI	CCNNGG	3 cut(s)	80, 407, 571
BseGI	GGATG	3 cut(s)	335, 378, 754
BseLI	CCNNNNNNNGG	4 cut(s)	107, 373, 508, 577
BseMII	CTCAG	2 cut(s)	773, 935
BseNI	ACTGG	2 cut(s)	94, 939
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	406, 501, 938
BsiSI	CCGG	2 cut(s)	108, 467
BslFI	GGGAC	4 cut(s)	98, 213, 362, 525
BslI	CCNNNNNNNGG	4 cut(s)	107, 373, 508, 577
BsmAI	GTCTC	2 cut(s)	138, 924
BsmBI	CGTCTC	1 cut(s)	924
BsmFI	GGGAC	4 cut(s)	98, 213, 362, 525
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	406, 501, 938
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	3 cut(s)	406, 501, 938
BspCNI	CTCAG	2 cut(s)	774, 934
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	201, 378, 513
BspTNI	GGTCTC	1 cut(s)	138
BsrBI	CCGCTC	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	94, 939
BssECI	CCNNGG	3 cut(s)	80, 407, 571
BssMI	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
BssNI	GRCGYC	2 cut(s)	111, 917
Bst2UI	CCWGG	3 cut(s)	81, 408, 627
Bst4CI	ACNGT	2 cut(s)	875, 892
Bst6I	CTCTTC	2 cut(s)	600, 813
BstACI	GRCGYC	2 cut(s)	111, 917
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	700
BstDEI	CTNAG	2 cut(s)	782, 921
BstF5I	GGATG	3 cut(s)	335, 378, 754
BstKTI	GATC	6 cut(s)	154, 216, 253, 287, 763, 849
BstMAI	GTCTC	2 cut(s)	138, 924
BstMBI	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	3 cut(s)	81, 408, 627
BstNSI	RCATGY	1 cut(s)	659
BstSCI	CCNGG	4 cut(s)	79, 106, 406, 625
BsuI	GTATCC	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	406, 501, 938
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	335, 378, 754
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	1 cut(s)	700
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	4 cut(s)	200, 376, 512, 937
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	18, 807
CspCI	CAANNNNNGTGG	2 cut(s)	418, 453
CviAII	CATG	3 cut(s)	254, 547, 656
CviQI	GTAC	2 cut(s)	18, 807
DdeI	CTNAG	2 cut(s)	782, 921
DpnI	GATC	6 cut(s)	153, 215, 252, 286, 762, 848
DpnII	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
Eam1104I	CTCTTC	2 cut(s)	600, 813
EarI	CTCTTC	2 cut(s)	600, 813
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	200, 376, 512
Eco72I	CACGTG	1 cut(s)	518
EcoRI	GAATTC	2 cut(s)	72, 420
EcoRII	CCWGG	3 cut(s)	79, 406, 625
EcoT38I	GRGCYC	1 cut(s)	827
Esp3I	CGTCTC	1 cut(s)	924
FaeI	CATG	3 cut(s)	257, 550, 659
FaqI	GGGAC	4 cut(s)	98, 213, 362, 525
FatI	CATG	3 cut(s)	253, 546, 655
FauNDI	CATATG	2 cut(s)	832, 851
FblI	GTMKAC	1 cut(s)	310
FokI	GGATG	3 cut(s)	342, 385, 761
FriOI	GRGCYC	1 cut(s)	827
FspBI	CTAG	2 cut(s)	179, 725
GsuI	CTGGAG	2 cut(s)	51, 168
HaeIII	GGCC	3 cut(s)	406, 501, 938
HapII	CCGG	2 cut(s)	108, 467
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	2 cut(s)	111, 917
Hin1II	CATG	3 cut(s)	257, 550, 659
HincII	GTYRAC	4 cut(s)	296, 871, 880, 932
HindII	GTYRAC	4 cut(s)	296, 871, 880, 932
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	3 cut(s)	593, 752, 836
HpaII	CCGG	2 cut(s)	108, 467
Hpy166II	GTNNAC	6 cut(s)	296, 311, 472, 871, 880, 932
Hpy188I	TCNGA	3 cut(s)	218, 572, 924
Hpy188III	TCNNGA	6 cut(s)	30, 147, 155, 254, 336, 680
Hpy8I	GTNNAC	6 cut(s)	296, 311, 472, 871, 880, 932
HpyAV	CCTTC	5 cut(s)	153, 213, 402, 583, 743
HpyCH4III	ACNGT	2 cut(s)	875, 892
HpyCH4IV	ACGT	2 cut(s)	517, 917
HpyCH4V	TGCA	7 cut(s)	119, 211, 248, 343, 415, 655, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	782, 921
HpySE526I	ACGT	2 cut(s)	517, 917
Hsp92I	GRCGYC	2 cut(s)	111, 917
Hsp92II	CATG	3 cut(s)	257, 550, 659
Kzo9I	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
LmnI	GCTCC	1 cut(s)	144
LweI	GCATC	2 cut(s)	128, 865
MaeI	CTAG	2 cut(s)	179, 725
MaeII	ACGT	2 cut(s)	517, 917
MaeIII	GTNAC	2 cut(s)	86, 907
MalI	GATC	6 cut(s)	153, 215, 252, 286, 762, 848
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
MboII	GAAGA	4 cut(s)	617, 695, 830, 856
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	9 cut(s)	52, 72, 420, 490, 504, 611, 674, 788, 896
MlyI	GAGTC	2 cut(s)	761, 830
MmeI	TCCRAC	2 cut(s)	391, 449
MroXI	GAANNNNTTC	1 cut(s)	580
MseI	TTAA	2 cut(s)	642, 801
MslI	CAYNNNNRTG	2 cut(s)	303, 642
MspA1I	CMGCKG	1 cut(s)	781
MspI	CCGG	2 cut(s)	108, 467
MspR9I	CCNGG	4 cut(s)	81, 108, 408, 627
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	3 cut(s)	81, 408, 627
MwoI	GCNNNNNNNGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	108
NdeI	CATATG	2 cut(s)	832, 851
NdeII	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
NlaIII	CATG	3 cut(s)	257, 550, 659
NlaIV	GGNNCC	3 cut(s)	201, 378, 513
NmuCI	GTSAC	1 cut(s)	907
NspI	RCATGY	1 cut(s)	659
PagI	TCATGA	1 cut(s)	253
PctI	GAATGC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	373
PleI	GAGTC	2 cut(s)	760, 830
PmaCI	CACGTG	1 cut(s)	518
PmlI	CACGTG	1 cut(s)	518
PpsI	GAGTC	2 cut(s)	760, 830
Ppu21I	YACGTR	1 cut(s)	518
Psp6I	CCWGG	3 cut(s)	79, 406, 625
PspCI	CACGTG	1 cut(s)	518
PspGI	CCWGG	3 cut(s)	79, 406, 625
PspN4I	GGNNCC	3 cut(s)	201, 378, 513
PspPI	GGNCC	4 cut(s)	200, 376, 512, 937
PvuII	CAGCTG	1 cut(s)	781
RsaI	GTAC	2 cut(s)	19, 808
RsaNI	GTAC	2 cut(s)	18, 807
RseI	CAYNNNNRTG	2 cut(s)	303, 642
SaqAI	TTAA	2 cut(s)	642, 801
Sau3AI	GATC	6 cut(s)	151, 213, 250, 284, 760, 846
Sau96I	GGNCC	4 cut(s)	200, 376, 512, 937
ScaI	AGTACT	1 cut(s)	19
SchI	GAGTC	2 cut(s)	761, 830
ScrFI	CCNGG	4 cut(s)	81, 108, 408, 627
SduI	GDGCHC	1 cut(s)	827
SetI	ASST	9 cut(s)	134, 295, 520, 628, 735, 783, 796, 888, 920
SfaNI	GCATC	2 cut(s)	128, 865
SinI	GGWCC	3 cut(s)	200, 376, 512
SmiMI	CAYNNNNRTG	2 cut(s)	303, 642
SmlI	CTYRAG	2 cut(s)	263, 737
SmoI	CTYRAG	2 cut(s)	263, 737
Sse9I	AATT	9 cut(s)	52, 72, 420, 490, 504, 611, 674, 788, 896
SsiI	CCGC	1 cut(s)	137
SspMI	CTAG	2 cut(s)	179, 725
StyD4I	CCNGG	4 cut(s)	79, 106, 406, 625
TaaI	ACNGT	2 cut(s)	875, 892
TaiI	ACGT	2 cut(s)	520, 920
TaqI	TCGA	4 cut(s)	49, 154, 395, 759
TasI	AATT	9 cut(s)	52, 72, 420, 490, 504, 611, 674, 788, 896
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	2 cut(s)	642, 801
Tru9I	TTAA	2 cut(s)	642, 801
TscAI	CASTG	1 cut(s)	720
TseFI	GTSAC	1 cut(s)	907
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	2 cut(s)	270, 648
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	373
VpaK11BI	GGWCC	3 cut(s)	200, 376, 512
XapI	RAATTY	4 cut(s)	72, 420, 504, 674
XceI	RCATGY	1 cut(s)	659
XmiI	GTMKAC	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	580
XspI	CTAG	2 cut(s)	179, 725
ZraI	GACGTC	1 cut(s)	918
ZrmI	AGTACT	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.