Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Reverse (-)

19436413 .. 19439862

Gene Structure 3450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCGGTATCCACCTCCCGGCGTCCCTGCATCTCCACACCGGTCTCCGCTCCCTTCCGTAGATCGAGAAAGATATTTGGCTGAACTACTGGCAGAGAAGCAAAAGTTGGGGCCATTTGTGCAGGTTTTGCCACTATGTAGCAGACTTCTAAGTCATGAAATCCGAAGGGTGTCGGGCTTCAATCAATCTCTTGCAGATCATGAATTACTTGAGCGTGAAAGTCCGTATAGGTCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGAATGGTCCCATTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTTGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATTCGAGGAAAGGGATCTGTGAAGGATTCGGTAAAGGAAGAAAAATTAAAAGAAAAGCCTGGATACGAACATCTTAATGAGCCATTACATGTGTTGGTGGAGGCTGAATTTCCTGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCAGTGGATGAGTCTTTTGATCACTATAAGAAGCAACAGCTGAGAGAATTGGCCATGCTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCGAGTCTAAGCCCAAGCATGTCACCCTTCAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

294

Amino Acids

33.2

Weight (kDa)

8.92

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	34 - 77	1.6e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	151 - 239	9.2e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	4 cut(s)	12, 396, 480, 650
AcuI	CTGAAG	1 cut(s)	678
AcvI	CACGTG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	784, 850
AfiI	CCNNNNNNNGG	3 cut(s)	47, 349, 484
AflIII	ACRYGT	1 cut(s)	631
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	4 cut(s)	211, 362, 518, 844
AjnI	CCWGG	3 cut(s)	19, 382, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	1 cut(s)	757
AluI	AGCT	1 cut(s)	757
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	565
Ama87I	CYCGRG	1 cut(s)	814
AoxI	GGCC	4 cut(s)	140, 380, 475, 768
ApoI	RAATTY	4 cut(s)	12, 396, 480, 650
AsiGI	ACCGGT	1 cut(s)	69
AspS9I	GGNCC	3 cut(s)	140, 352, 488
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	828
AvaI	CYCGRG	1 cut(s)	814
AvaII	GGWCC	2 cut(s)	352, 488
BalI	TGGCCA	1 cut(s)	770
BanII	GRGCYC	2 cut(s)	803, 815
BbrPI	CACGTG	1 cut(s)	494
BccI	CCATC	2 cut(s)	300, 367
BciT130I	CCWGG	3 cut(s)	21, 384, 603
BciVI	GTATCC	2 cut(s)	48, 599
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	701
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	2 cut(s)	48, 599
Bme1390I	CCNGG	4 cut(s)	21, 48, 384, 603
Bme18I	GGWCC	2 cut(s)	352, 488
BmeT110I	CYCGRG	1 cut(s)	814
BmgT120I	GGNCC	3 cut(s)	140, 352, 488
BmiI	GGNNCC	3 cut(s)	141, 354, 489
BmrFI	CCNGG	4 cut(s)	21, 48, 384, 603
BmsI	GCATC	1 cut(s)	68
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	2 cut(s)	260, 698
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	20, 383
BsaWI	WCCGGW	3 cut(s)	33, 69, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 349, 484
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	2 cut(s)	123, 719
BseBI	CCWGG	3 cut(s)	21, 384, 603
BseDI	CCNNGG	2 cut(s)	20, 383
BseGI	GGATG	2 cut(s)	311, 730
BseLI	CCNNNNNNNGG	3 cut(s)	47, 349, 484
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	2 cut(s)	123, 719
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	4 cut(s)	142, 382, 477, 770
BshTI	ACCGGT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	814
BsiSI	CCGG	4 cut(s)	34, 48, 70, 443
BslFI	GGGAC	3 cut(s)	38, 338, 501
BslI	CCNNNNNNNGG	3 cut(s)	47, 349, 484
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	38, 338, 501
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	4 cut(s)	142, 382, 477, 770
Bso31I	GGTCTC	1 cut(s)	78
BsoBI	CYCGRG	1 cut(s)	814
Bsp1286I	GDGCHC	2 cut(s)	803, 815
Bsp143I	GATC	4 cut(s)	91, 226, 557, 736
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	4 cut(s)	142, 382, 477, 770
BspCNI	CTCAG	1 cut(s)	750
BspHI	TCATGA	2 cut(s)	184, 229
BspLI	GGNNCC	3 cut(s)	141, 354, 489
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	565
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	79
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	123, 719
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	20, 383
BssMI	GATC	4 cut(s)	91, 226, 557, 736
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	21, 384, 603
Bst4CI	ACNGT	1 cut(s)	848
Bst6I	CTCTTC	1 cut(s)	789
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	179, 758, 821
BstF5I	GGATG	2 cut(s)	311, 730
BstKTI	GATC	4 cut(s)	94, 229, 560, 739
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	91, 226, 557, 736
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 157, 388
BstNI	CCWGG	3 cut(s)	21, 384, 603
BstNSI	RCATGY	2 cut(s)	635, 835
BstSCI	CCNGG	4 cut(s)	19, 46, 382, 601
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuI	GTATCC	2 cut(s)	48, 599
BsuRI	GGCC	4 cut(s)	142, 382, 477, 770
BtsCI	GGATG	2 cut(s)	311, 730
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	696, 726
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	676
CciI	TCATGA	2 cut(s)	184, 229
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	3 cut(s)	140, 352, 488
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	783, 849
CspAI	ACCGGT	1 cut(s)	69
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	6 cut(s)	185, 230, 523, 632, 772, 832
CviQI	GTAC	2 cut(s)	783, 849
DdeI	CTNAG	3 cut(s)	179, 758, 821
DpnI	GATC	4 cut(s)	93, 228, 559, 738
DpnII	GATC	4 cut(s)	91, 226, 557, 736
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco24I	GRGCYC	2 cut(s)	803, 815
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	352, 488
Eco57I	CTGAAG	1 cut(s)	678
Eco72I	CACGTG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	814
EcoRI	GAATTC	2 cut(s)	12, 396
EcoRII	CCWGG	3 cut(s)	19, 382, 601
EcoT38I	GRGCYC	2 cut(s)	803, 815
FaeI	CATG	6 cut(s)	188, 233, 526, 635, 775, 835
FaqI	GGGAC	3 cut(s)	38, 338, 501
FatI	CATG	6 cut(s)	184, 229, 522, 631, 771, 831
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	286
FokI	GGATG	2 cut(s)	318, 737
FriOI	GRGCYC	2 cut(s)	803, 815
FspBI	CTAG	1 cut(s)	701
HaeIII	GGCC	4 cut(s)	142, 382, 477, 770
HapII	CCGG	4 cut(s)	34, 48, 70, 443
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	188, 233, 526, 635, 775, 835
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	3 cut(s)	569, 728, 817
HpaII	CCGG	4 cut(s)	34, 48, 70, 443
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	3 cut(s)	272, 287, 448
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	5 cut(s)	95, 185, 230, 312, 656
Hpy8I	GTNNAC	3 cut(s)	272, 287, 448
HpyAV	CCTTC	6 cut(s)	93, 189, 378, 559, 719, 850
HpyCH4III	ACNGT	1 cut(s)	848
HpyCH4IV	ACGT	2 cut(s)	493, 862
HpyCH4V	TGCA	6 cut(s)	59, 151, 224, 319, 391, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 157, 388
HpyF3I	CTNAG	3 cut(s)	179, 758, 821
HpySE526I	ACGT	2 cut(s)	493, 862
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	188, 233, 526, 635, 775, 835
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	91, 226, 557, 736
LmnI	GCTCC	1 cut(s)	84
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	701
MaeII	ACGT	2 cut(s)	493, 862
MaeIII	GTNAC	2 cut(s)	26, 834
MalI	GATC	4 cut(s)	93, 228, 559, 738
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	4 cut(s)	91, 226, 557, 736
MboII	GAAGA	3 cut(s)	593, 671, 806
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	2 cut(s)	803, 815
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	8 cut(s)	12, 233, 396, 466, 480, 587, 650, 764
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	2 cut(s)	737, 826
MmeI	TCCRAC	2 cut(s)	367, 425
MnlI	CCTC	7 cut(s)	27, 54, 295, 319, 542, 637, 783
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	3 cut(s)	590, 618, 777
MslI	CAYNNNNRTG	2 cut(s)	279, 618
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	757
MspI	CCGG	4 cut(s)	34, 48, 70, 443
MspR9I	CCNGG	4 cut(s)	21, 48, 384, 603
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	3 cut(s)	21, 384, 603
MwoI	GCNNNNNNNGC	3 cut(s)	148, 157, 388
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	4 cut(s)	91, 226, 557, 736
NlaIII	CATG	6 cut(s)	188, 233, 526, 635, 775, 835
NlaIV	GGNNCC	3 cut(s)	141, 354, 489
NmuCI	GTSAC	1 cut(s)	834
NspI	RCATGY	2 cut(s)	635, 835
PagI	TCATGA	2 cut(s)	184, 229
PciI	ACATGT	1 cut(s)	631
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	69
PleI	GAGTC	2 cut(s)	736, 825
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	2 cut(s)	736, 825
Ppu21I	YACGTR	1 cut(s)	494
PscI	ACATGT	1 cut(s)	631
Psp6I	CCWGG	3 cut(s)	19, 382, 601
PspCI	CACGTG	1 cut(s)	494
PspGI	CCWGG	3 cut(s)	19, 382, 601
PspN4I	GGNNCC	3 cut(s)	141, 354, 489
PspPI	GGNCC	3 cut(s)	140, 352, 488
PsuI	RGATCY	1 cut(s)	557
PvuII	CAGCTG	1 cut(s)	757
RsaI	GTAC	2 cut(s)	784, 850
RsaNI	GTAC	2 cut(s)	783, 849
RseI	CAYNNNNRTG	2 cut(s)	279, 618
SaqAI	TTAA	3 cut(s)	590, 618, 777
Sau3AI	GATC	4 cut(s)	91, 226, 557, 736
Sau96I	GGNCC	3 cut(s)	140, 352, 488
SchI	GAGTC	2 cut(s)	737, 826
ScrFI	CCNGG	4 cut(s)	21, 48, 384, 603
SduI	GDGCHC	2 cut(s)	803, 815
SetI	ASST	8 cut(s)	46, 156, 263, 271, 496, 711, 759, 865
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	2 cut(s)	352, 488
SmiMI	CAYNNNNRTG	2 cut(s)	279, 618
SmlI	CTYRAG	2 cut(s)	239, 713
SmoI	CTYRAG	2 cut(s)	239, 713
Sse9I	AATT	8 cut(s)	12, 233, 396, 466, 480, 587, 650, 764
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	4 cut(s)	19, 46, 382, 601
TaaI	ACNGT	1 cut(s)	848
TaiI	ACGT	2 cut(s)	496, 865
TaqI	TCGA	3 cut(s)	94, 371, 547
TasI	AATT	8 cut(s)	12, 233, 396, 466, 480, 587, 650, 764
TatI	WGTACW	1 cut(s)	848
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	3 cut(s)	590, 618, 777
Tru9I	TTAA	3 cut(s)	590, 618, 777
TscAI	CASTG	2 cut(s)	696, 726
TseFI	GTSAC	1 cut(s)	834
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	3 cut(s)	201, 246, 872
TspGWI	ACGGA	2 cut(s)	76, 243
TspRI	CASTG	2 cut(s)	696, 726
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	352, 488
XapI	RAATTY	4 cut(s)	12, 396, 480, 650
XceI	RCATGY	2 cut(s)	635, 835
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.