Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

29892505 .. 29897778

Gene Structure 5274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTTGAGATCTAATGCTGTGAGACTTTTGCCAACACCTGCACATATTCCGATCTCTCTGCCCCCACCTCCCTCCTCCTGTATCTCCTTCCCACCCGCAAGTAGTCGAAATTGTGTGATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCGCTCCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGGTTTTGCCGCTATGTAGCAGACTTCTAAGTCATGAGATCAGAAGGGTGTCGGGCTTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTTCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTTGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTAAAAGAAAAGCCTGGATATGAACATCTTAATGAGCCGTTGCATGTGTTGGTGGAGGCTGAATTTCCTGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATACTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCAAGTCTAAGCCCAAGCATGTCACCCTTTAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

333

Amino Acids

37.24

Weight (kDa)

9.07

Isoelectric Point (pI)

64.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	73 - 116	2e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	190 - 278	1.2e-20	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	46
AasI	GACNNNNNNGTC	1 cut(s)	297
Acc36I	ACCTGC	2 cut(s)	46, 259
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	3 cut(s)	96, 194, 278
AcsI	RAATTY	4 cut(s)	129, 513, 597, 767
AcuI	CTGAAG	1 cut(s)	795
AcvI	CACGTG	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	901, 967
AfiI	CCNNNNNNNGG	4 cut(s)	164, 466, 601, 670
AgsI	TTSAA	4 cut(s)	328, 479, 509, 635
AjnI	CCWGG	3 cut(s)	136, 499, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	2 cut(s)	874, 887
AluI	AGCT	2 cut(s)	874, 887
Alw26I	GTCTC	2 cut(s)	16, 195
AoxI	GGCC	2 cut(s)	497, 592
ApoI	RAATTY	4 cut(s)	129, 513, 597, 767
Asp700I	GAANNNNTTC	1 cut(s)	673
AspS9I	GGNCC	3 cut(s)	257, 469, 605
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	945
AvaII	GGWCC	3 cut(s)	257, 469, 605
BanII	GRGCYC	2 cut(s)	920, 932
BbrPI	CACGTG	1 cut(s)	611
BbvCI	CCTCAGC	1 cut(s)	875
BccI	CCATC	4 cut(s)	112, 417, 460, 484
BceAI	ACGGC	1 cut(s)	727
BcgI	CGANNNNNNTGC	2 cut(s)	40, 74
BciT130I	CCWGG	3 cut(s)	138, 501, 720
BciVI	GTATCC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	2 cut(s)	16, 195
BfaI	CTAG	2 cut(s)	236, 818
BfuAI	ACCTGC	2 cut(s)	46, 259
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
Bme1390I	CCNGG	4 cut(s)	138, 165, 501, 720
Bme18I	GGWCC	3 cut(s)	257, 469, 605
BmgT120I	GGNCC	3 cut(s)	257, 469, 605
BmiI	GGNNCC	3 cut(s)	258, 471, 606
BmrFI	CCNGG	4 cut(s)	138, 165, 501, 720
BmsI	GCATC	1 cut(s)	185
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	875
BpuEI	CTTGAG	2 cut(s)	377, 815
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	137, 500, 664
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 466, 601, 670
Bse1I	ACTGG	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	138, 501, 720
BseDI	CCNNGG	3 cut(s)	137, 500, 664
BseGI	GGATG	3 cut(s)	428, 471, 847
BseLI	CCNNNNNNNGG	4 cut(s)	164, 466, 601, 670
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	64
BsgI	GTGCAG	2 cut(s)	24, 287
BshFI	GGCC	2 cut(s)	499, 594
BsiSI	CCGG	2 cut(s)	165, 560
BslFI	GGGAC	4 cut(s)	155, 270, 455, 618
BslI	CCNNNNNNNGG	4 cut(s)	164, 466, 601, 670
BsmAI	GTCTC	2 cut(s)	16, 195
BsmFI	GGGAC	4 cut(s)	155, 270, 455, 618
BsmI	GAATGC	1 cut(s)	438
BsnI	GGCC	2 cut(s)	499, 594
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	920, 932
Bsp143I	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
BspACI	CCGC	3 cut(s)	96, 194, 278
BspANI	GGCC	2 cut(s)	499, 594
BspCNI	CTCAG	1 cut(s)	867
BspHI	TCATGA	2 cut(s)	301, 346
BspLI	GGNNCC	3 cut(s)	258, 471, 606
BspMI	ACCTGC	2 cut(s)	46, 259
BspTNI	GGTCTC	1 cut(s)	195
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	3 cut(s)	137, 500, 664
BssMI	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	138, 501, 720
Bst4CI	ACNGT	1 cut(s)	965
Bst6I	CTCTTC	2 cut(s)	693, 906
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstBAI	YACGTR	1 cut(s)	611
BstC8I	GCNNGC	1 cut(s)	793
BstDEI	CTNAG	3 cut(s)	296, 875, 938
BstF5I	GGATG	3 cut(s)	428, 471, 847
BstKTI	GATC	7 cut(s)	11, 54, 211, 309, 346, 380, 856
BstMAI	GTCTC	2 cut(s)	16, 195
BstMBI	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	3 cut(s)	138, 501, 720
BstNSI	RCATGY	2 cut(s)	752, 952
BstSCI	CCNGG	4 cut(s)	136, 163, 499, 718
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	499, 594
BtsCI	GGATG	3 cut(s)	428, 471, 847
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
BveI	ACCTGC	2 cut(s)	46, 259
Cac8I	GCNNGC	1 cut(s)	793
CciI	TCATGA	2 cut(s)	301, 346
Cfr13I	GGNCC	3 cut(s)	257, 469, 605
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	900, 966
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	5 cut(s)	302, 347, 640, 749, 949
CviQI	GTAC	2 cut(s)	900, 966
DdeI	CTNAG	3 cut(s)	296, 875, 938
DpnI	GATC	7 cut(s)	10, 53, 210, 308, 345, 379, 855
DpnII	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	693, 906
EarI	CTCTTC	2 cut(s)	693, 906
Eco24I	GRGCYC	2 cut(s)	920, 932
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	3 cut(s)	257, 469, 605
Eco57I	CTGAAG	1 cut(s)	795
Eco72I	CACGTG	1 cut(s)	611
EcoRI	GAATTC	2 cut(s)	129, 513
EcoRII	CCWGG	3 cut(s)	136, 499, 718
EcoT38I	GRGCYC	2 cut(s)	920, 932
FaeI	CATG	5 cut(s)	305, 350, 643, 752, 952
FaqI	GGGAC	4 cut(s)	155, 270, 455, 618
FatI	CATG	5 cut(s)	301, 346, 639, 748, 948
FauI	CCCGC	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	3 cut(s)	435, 478, 854
FriOI	GRGCYC	2 cut(s)	920, 932
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	2 cut(s)	236, 818
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	499, 594
HapII	CCGG	2 cut(s)	165, 560
HgaI	GACGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	305, 350, 643, 752, 952
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	686, 845
HpaII	CCGG	2 cut(s)	165, 560
HphI	GGTGA	1 cut(s)	945
Hpy166II	GTNNAC	3 cut(s)	389, 404, 565
Hpy188I	TCNGA	3 cut(s)	51, 311, 665
Hpy188III	TCNNGA	6 cut(s)	204, 212, 302, 347, 429, 773
Hpy8I	GTNNAC	3 cut(s)	389, 404, 565
HpyAV	CCTTC	6 cut(s)	97, 210, 306, 495, 676, 836
HpyCH4III	ACNGT	1 cut(s)	965
HpyCH4IV	ACGT	2 cut(s)	610, 979
HpyCH4V	TGCA	7 cut(s)	41, 176, 268, 341, 436, 748, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	296, 875, 938
HpySE526I	ACGT	2 cut(s)	610, 979
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	305, 350, 643, 752, 952
Kzo9I	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
LmnI	GCTCC	1 cut(s)	201
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	236, 818
MaeII	ACGT	2 cut(s)	610, 979
MaeIII	GTNAC	2 cut(s)	143, 951
MalI	GATC	7 cut(s)	10, 53, 210, 308, 345, 379, 855
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
MboII	GAAGA	3 cut(s)	710, 788, 923
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	920, 932
MluCI	AATT	8 cut(s)	109, 129, 513, 583, 597, 704, 767, 881
MlyI	GAGTC	1 cut(s)	854
MmeI	TCCRAC	2 cut(s)	484, 542
MroXI	GAANNNNTTC	1 cut(s)	673
MseI	TTAA	4 cut(s)	707, 735, 894, 960
MslI	CAYNNNNRTG	2 cut(s)	396, 735
MspA1I	CMGCKG	1 cut(s)	874
MspI	CCGG	2 cut(s)	165, 560
MspR9I	CCNGG	4 cut(s)	138, 165, 501, 720
Mva1269I	GAATGC	1 cut(s)	438
MvaI	CCWGG	3 cut(s)	138, 501, 720
MwoI	GCNNNNNNNGC	1 cut(s)	274
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
NlaIII	CATG	5 cut(s)	305, 350, 643, 752, 952
NlaIV	GGNNCC	3 cut(s)	258, 471, 606
NmuCI	GTSAC	1 cut(s)	951
NspI	RCATGY	2 cut(s)	752, 952
PagI	TCATGA	2 cut(s)	301, 346
PaqCI	CACCTGC	1 cut(s)	46
PctI	GAATGC	1 cut(s)	438
PdmI	GAANNNNTTC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	1 cut(s)	279
PleI	GAGTC	1 cut(s)	853
PmaCI	CACGTG	1 cut(s)	611
PmlI	CACGTG	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	853
Ppu21I	YACGTR	1 cut(s)	611
Psp6I	CCWGG	3 cut(s)	136, 499, 718
PspCI	CACGTG	1 cut(s)	611
PspGI	CCWGG	3 cut(s)	136, 499, 718
PspN4I	GGNNCC	3 cut(s)	258, 471, 606
PspPI	GGNCC	3 cut(s)	257, 469, 605
PsuI	RGATCY	1 cut(s)	8
PvuII	CAGCTG	1 cut(s)	874
RsaI	GTAC	2 cut(s)	901, 967
RsaNI	GTAC	2 cut(s)	900, 966
RseI	CAYNNNNRTG	2 cut(s)	396, 735
SaqAI	TTAA	4 cut(s)	707, 735, 894, 960
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	7 cut(s)	8, 51, 208, 306, 343, 377, 853
Sau96I	GGNCC	3 cut(s)	257, 469, 605
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	4 cut(s)	138, 165, 501, 720
SduI	GDGCHC	2 cut(s)	920, 932
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	3 cut(s)	257, 469, 605
SmiMI	CAYNNNNRTG	2 cut(s)	396, 735
SmlI	CTYRAG	2 cut(s)	356, 830
SmoI	CTYRAG	2 cut(s)	356, 830
Sse9I	AATT	8 cut(s)	109, 129, 513, 583, 597, 704, 767, 881
SsiI	CCGC	3 cut(s)	96, 194, 278
SspMI	CTAG	2 cut(s)	236, 818
StyD4I	CCNGG	4 cut(s)	136, 163, 499, 718
TaaI	ACNGT	1 cut(s)	965
TaiI	ACGT	2 cut(s)	613, 982
TaqI	TCGA	4 cut(s)	106, 211, 488, 852
TasI	AATT	8 cut(s)	109, 129, 513, 583, 597, 704, 767, 881
TatI	WGTACW	1 cut(s)	965
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	707, 735, 894, 960
Tru9I	TTAA	4 cut(s)	707, 735, 894, 960
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	951
Tsp45I	GTSAC	1 cut(s)	951
TspDTI	ATGAA	3 cut(s)	363, 741, 989
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	813
Van91I	CCANNNNNTGG	1 cut(s)	466
VpaK11BI	GGWCC	3 cut(s)	257, 469, 605
XapI	RAATTY	4 cut(s)	129, 513, 597, 767
XceI	RCATGY	2 cut(s)	752, 952
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	673
XspI	CTAG	2 cut(s)	236, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.