Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Reverse (-)

32285294 .. 32289887

Gene Structure 4594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG326300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCGCTTCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGGTTTTGCCGCTATGTAGCAGACTTCTAAGTCATGAGATCAGAAGGGTGTCGGGCTTCAATGAAACTCGTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTTCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTATATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGTAAGGGTTCTTTACAACAAATTGCTTGGTATGAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

206

Amino Acids

23.38

Weight (kDa)

9.82

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	34 - 69	2e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	151 - 190	1.8e-13	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	2 cut(s)	77, 161
AcsI	RAATTY	3 cut(s)	12, 396, 480
AcvI	CACGTG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
AgsI	TTSAA	3 cut(s)	211, 362, 518
AjnI	CCWGG	2 cut(s)	19, 382
AjuI	GAANNNNNNNTTGG	4 cut(s)	119, 151, 336, 368
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	380, 475
ApoI	RAATTY	3 cut(s)	12, 396, 480
Asp700I	GAANNNNTTC	1 cut(s)	556
AspS9I	GGNCC	2 cut(s)	140, 488
AsuC2I	CCSGG	1 cut(s)	48
AvaII	GGWCC	2 cut(s)	140, 488
BauI	CACGAG	1 cut(s)	219
BbrPI	CACGTG	1 cut(s)	494
BccI	CCATC	3 cut(s)	300, 343, 367
BciT130I	CCWGG	2 cut(s)	21, 384
BciVI	GTATCC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	1 cut(s)	119
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	3 cut(s)	21, 48, 384
Bme18I	GGWCC	2 cut(s)	140, 488
BmgT120I	GGNCC	2 cut(s)	140, 488
BmiI	GGNNCC	3 cut(s)	141, 354, 489
BmrFI	CCNGG	3 cut(s)	21, 48, 384
BmsI	GCATC	1 cut(s)	68
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	20, 383, 547
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	21, 384
BseDI	CCNNGG	3 cut(s)	20, 383, 547
BseGI	GGATG	2 cut(s)	311, 354
BseLI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
BseNI	ACTGG	1 cut(s)	34
BsgI	GTGCAG	2 cut(s)	170, 243
BshFI	GGCC	2 cut(s)	382, 477
BsiSI	CCGG	2 cut(s)	48, 443
BslFI	GGGAC	3 cut(s)	38, 153, 501
BslI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	38, 153, 501
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	382, 477
Bso31I	GGTCTC	1 cut(s)	78
Bsp143I	GATC	4 cut(s)	91, 189, 226, 260
BspACI	CCGC	2 cut(s)	77, 161
BspANI	GGCC	2 cut(s)	382, 477
BspHI	TCATGA	2 cut(s)	184, 229
BspLI	GGNNCC	3 cut(s)	141, 354, 489
BspMI	ACCTGC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	20, 383, 547
BssMI	GATC	4 cut(s)	91, 189, 226, 260
BssNI	GRCGYC	1 cut(s)	51
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	21, 384
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	311, 354
BstKTI	GATC	4 cut(s)	94, 192, 229, 263
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	4 cut(s)	91, 189, 226, 260
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 388
BstNI	CCWGG	2 cut(s)	21, 384
BstSCI	CCNGG	3 cut(s)	19, 46, 382
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	382, 477
BtsCI	GGATG	2 cut(s)	311, 354
BveI	ACCTGC	1 cut(s)	142
CciI	TCATGA	2 cut(s)	184, 229
Cfr13I	GGNCC	2 cut(s)	140, 488
CseI	GACGC	1 cut(s)	40
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	3 cut(s)	185, 230, 523
CviJI	RGCY	5 cut(s)	110, 207, 382, 477, 521
CviKI_1	RGCY	5 cut(s)	110, 207, 382, 477, 521
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	4 cut(s)	93, 191, 228, 262
DpnII	GATC	4 cut(s)	91, 189, 226, 260
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	140, 488
Eco72I	CACGTG	1 cut(s)	494
EcoRI	GAATTC	2 cut(s)	12, 396
EcoRII	CCWGG	2 cut(s)	19, 382
FaeI	CATG	3 cut(s)	188, 233, 526
FaiI	YATR	9 cut(s)	166, 186, 231, 256, 339, 524, 541, 543, 611
FaqI	GGGAC	3 cut(s)	38, 153, 501
FatI	CATG	3 cut(s)	184, 229, 522
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	318, 361
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	382, 477
HapII	CCGG	2 cut(s)	48, 443
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	188, 233, 526
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	2 cut(s)	48, 443
Hpy166II	GTNNAC	3 cut(s)	272, 287, 448
Hpy188I	TCNGA	2 cut(s)	194, 548
Hpy188III	TCNNGA	5 cut(s)	87, 95, 185, 230, 312
Hpy8I	GTNNAC	3 cut(s)	272, 287, 448
HpyAV	CCTTC	4 cut(s)	93, 189, 378, 559
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	59, 151, 224, 319, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 388
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	188, 233, 526
Kzo9I	GATC	4 cut(s)	91, 189, 226, 260
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	93, 191, 228, 262
MboI	GATC	4 cut(s)	91, 189, 226, 260
MluCI	AATT	5 cut(s)	12, 396, 466, 480, 599
MmeI	TCCRAC	2 cut(s)	367, 425
MnlI	CCTC	5 cut(s)	27, 54, 295, 319, 542
MroXI	GAANNNNTTC	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	2 cut(s)	48, 443
MspR9I	CCNGG	3 cut(s)	21, 48, 384
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	21, 384
MwoI	GCNNNNNNNGC	2 cut(s)	157, 388
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	4 cut(s)	91, 189, 226, 260
NlaIII	CATG	3 cut(s)	188, 233, 526
NlaIV	GGNNCC	3 cut(s)	141, 354, 489
PagI	TCATGA	2 cut(s)	184, 229
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	162
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	494
Psp6I	CCWGG	2 cut(s)	19, 382
PspCI	CACGTG	1 cut(s)	494
PspGI	CCWGG	2 cut(s)	19, 382
PspN4I	GGNNCC	3 cut(s)	141, 354, 489
PspPI	GGNCC	2 cut(s)	140, 488
RseI	CAYNNNNRTG	1 cut(s)	279
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	4 cut(s)	91, 189, 226, 260
Sau96I	GGNCC	2 cut(s)	140, 488
ScrFI	CCNGG	3 cut(s)	21, 48, 384
SetI	ASST	5 cut(s)	74, 156, 271, 496, 582
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	2 cut(s)	140, 488
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	12, 396, 466, 480, 599
SsiI	CCGC	2 cut(s)	77, 161
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	3 cut(s)	19, 46, 382
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	94, 371
TasI	AATT	5 cut(s)	12, 396, 466, 480, 599
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	569
TspDTI	ATGAA	2 cut(s)	228, 246
TspGWI	ACGGA	2 cut(s)	345, 361
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	140, 488
XapI	RAATTY	3 cut(s)	12, 396, 480
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.