Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

53790248 .. 53794499

Gene Structure 4252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1438100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCTTCTCCACTCAGGTCTTCTCTCCCTGCAGATCGAGAGAGGTCAATATTTGGCTGAACTACTGGCAGAGAAGCAAAAGTTGGGACCATTCCTGCAAATATTTCCCCTATGTAGTAGACTTCTAAATCATGAGATCAGACGAGTATCAGGCTTCAATCAAACTCTTGCAGATCATGAGAGATTTGAGCATGACAGTCCATTTAGGTCATTAAGTCAAAACGCGAACGGTAGACCAATGGATTTGGAGGGATGGCCAGGAATACACATGGAGGACAATGGACATATCCAGAGAATGGCCCCGTTCCAATCTCCTTCTATGGGCTGGCCTGGGGCGCAAGGAATTCCAGCCACCCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTTGACAAATATCCACATTACAATTTTGTTGGCCGAATTTTGGGACCACGTGGGAACTCCTTAAAAAGAGTTGAAGCCATGACAGAGTGTAGGGTGTACATCCGAGGCCGGGGCTCTGTGAAGGATTCTGTAAAGGTTTCAGTGATATCATTTGGCTCCTTACATATTTGTACTGATTCTGATTTTCATGATGCGCCGTCTACATTGTTTTTATTCAGGAAGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

207

Amino Acids

23.33

Weight (kDa)

9.47

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	14 - 60	1.4e-12	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	133 - 190	1.1e-14	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccI	GTMKAC	3 cut(s)	118, 232, 590
AccII	CGCG	1 cut(s)	224
AcoI	YGGCCR	2 cut(s)	254, 421
AcsI	RAATTY	2 cut(s)	342, 426
AcvI	CACGTG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	488, 562
AfiI	CCNNNNNNNGG	4 cut(s)	295, 320, 430, 499
AgsI	TTSAA	2 cut(s)	157, 464
AjnI	CCWGG	2 cut(s)	256, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AoxI	GGCC	5 cut(s)	254, 297, 326, 421, 496
ApoI	RAATTY	2 cut(s)	342, 426
AspLEI	GCGC	2 cut(s)	337, 586
AspS9I	GGNCC	3 cut(s)	86, 298, 434
AsuC2I	CCSGG	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	86, 434
BalI	TGGCCA	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	506
BbrPI	CACGTG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	11
BccI	CCATC	1 cut(s)	246
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	2 cut(s)	258, 330
BcnI	CCSGG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	258, 330, 500
Bme18I	GGWCC	2 cut(s)	86, 434
BmgT120I	GGNCC	3 cut(s)	86, 298, 434
BmiI	GGNNCC	4 cut(s)	87, 300, 435, 547
BmrFI	CCNGG	3 cut(s)	258, 330, 500
BmsI	GCATC	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	3 cut(s)	329, 493, 499
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	4 cut(s)	295, 320, 430, 499
Bse1I	ACTGG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	258, 330
BseDI	CCNNGG	3 cut(s)	329, 493, 499
BseGI	GGATG	2 cut(s)	257, 489
BseLI	CCNNNNNNNGG	4 cut(s)	295, 320, 430, 499
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	5 cut(s)	256, 299, 328, 423, 498
BsiSI	CCGG	2 cut(s)	389, 499
BslFI	GGGAC	2 cut(s)	99, 447
BslI	CCNNNNNNNGG	4 cut(s)	295, 320, 430, 499
BsmFI	GGGAC	2 cut(s)	99, 447
BsnI	GGCC	5 cut(s)	256, 299, 328, 423, 498
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	33, 135, 172
BspANI	GGCC	5 cut(s)	256, 299, 328, 423, 498
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	3 cut(s)	130, 175, 577
BspLI	GGNNCC	4 cut(s)	87, 300, 435, 547
BspMAI	CTGCAG	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	329, 493, 499
BssMI	GATC	3 cut(s)	33, 135, 172
Bst2UI	CCWGG	2 cut(s)	258, 330
Bst4CI	ACNGT	2 cut(s)	197, 230
Bst6I	CTCTTC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	2 cut(s)	257, 489
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	2 cut(s)	337, 586
BstKTI	GATC	3 cut(s)	36, 138, 175
BstMBI	GATC	3 cut(s)	33, 135, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	258, 330
BstSCI	CCNGG	3 cut(s)	256, 328, 498
BstSFI	CTRYAG	1 cut(s)	29
BstUI	CGCG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	5 cut(s)	256, 299, 328, 423, 498
BtsCI	GGATG	2 cut(s)	257, 489
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	326
CciI	TCATGA	3 cut(s)	130, 175, 577
CfoI	GCGC	2 cut(s)	337, 586
Cfr13I	GGNCC	3 cut(s)	86, 298, 434
Csp6I	GTAC	2 cut(s)	487, 561
CspCI	CAANNNNNGTGG	2 cut(s)	340, 375
CviAII	CATG	6 cut(s)	131, 176, 191, 268, 469, 578
CviQI	GTAC	2 cut(s)	487, 561
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	3 cut(s)	35, 137, 174
DpnII	GATC	3 cut(s)	33, 135, 172
EaeI	YGGCCR	2 cut(s)	254, 421
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	86, 434
Eco72I	CACGTG	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	256, 328
EcoRV	GATATC	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	6 cut(s)	134, 179, 194, 271, 472, 581
FaqI	GGGAC	2 cut(s)	99, 447
FatI	CATG	6 cut(s)	130, 175, 190, 267, 468, 577
FblI	GTMKAC	3 cut(s)	118, 232, 590
FokI	GGATG	2 cut(s)	264, 476
FriOI	GRGCYC	1 cut(s)	506
GlaI	GCGC	2 cut(s)	336, 585
HaeIII	GGCC	5 cut(s)	256, 299, 328, 423, 498
HapII	CCGG	2 cut(s)	389, 499
HhaI	GCGC	2 cut(s)	337, 586
Hin1II	CATG	6 cut(s)	134, 179, 194, 271, 472, 581
Hin6I	GCGC	2 cut(s)	335, 584
HinP1I	GCGC	2 cut(s)	335, 584
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	515, 566
HpaII	CCGG	2 cut(s)	389, 499
Hpy166II	GTNNAC	5 cut(s)	119, 233, 394, 487, 591
Hpy188I	TCNGA	3 cut(s)	140, 494, 571
Hpy188III	TCNNGA	6 cut(s)	37, 131, 176, 289, 578, 607
Hpy8I	GTNNAC	5 cut(s)	119, 233, 394, 487, 591
HpyAV	CCTTC	2 cut(s)	324, 505
HpyCH4III	ACNGT	2 cut(s)	197, 230
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	31, 97, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	6 cut(s)	134, 179, 194, 271, 472, 581
HspAI	GCGC	2 cut(s)	335, 584
Kzo9I	GATC	3 cut(s)	33, 135, 172
LmnI	GCTCC	1 cut(s)	551
LweI	GCATC	1 cut(s)	571
MaeII	ACGT	1 cut(s)	439
MalI	GATC	3 cut(s)	35, 137, 174
MboI	GATC	3 cut(s)	33, 135, 172
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	506
MlsI	TGGCCA	1 cut(s)	256
MluCI	AATT	4 cut(s)	342, 412, 426, 616
MluNI	TGGCCA	1 cut(s)	256
MnlI	CCTC	4 cut(s)	35, 241, 265, 488
Mox20I	TGGCCA	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	256
MseI	TTAA	3 cut(s)	212, 452, 619
Msp20I	TGGCCA	1 cut(s)	256
MspI	CCGG	2 cut(s)	389, 499
MspR9I	CCNGG	3 cut(s)	258, 330, 500
MvaI	CCWGG	2 cut(s)	258, 330
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	3 cut(s)	33, 135, 172
NlaIII	CATG	6 cut(s)	134, 179, 194, 271, 472, 581
NlaIV	GGNNCC	4 cut(s)	87, 300, 435, 547
PagI	TCATGA	3 cut(s)	130, 175, 577
PfeI	GAWTC	2 cut(s)	515, 566
PflMI	CCANNNNNTGG	1 cut(s)	295
PmaCI	CACGTG	1 cut(s)	440
PmlI	CACGTG	1 cut(s)	440
Ppu21I	YACGTR	1 cut(s)	440
Psp6I	CCWGG	2 cut(s)	256, 328
PspCI	CACGTG	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	256, 328
PspN4I	GGNNCC	4 cut(s)	87, 300, 435, 547
PspPI	GGNCC	3 cut(s)	86, 298, 434
PstI	CTGCAG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	488, 562
RsaNI	GTAC	2 cut(s)	487, 561
SaqAI	TTAA	3 cut(s)	212, 452, 619
Sau3AI	GATC	3 cut(s)	33, 135, 172
Sau96I	GGNCC	3 cut(s)	86, 298, 434
ScrFI	CCNGG	3 cut(s)	258, 330, 500
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	5 cut(s)	19, 46, 209, 442, 528
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	2 cut(s)	86, 434
Sse9I	AATT	4 cut(s)	342, 412, 426, 616
SspI	AATATT	2 cut(s)	50, 102
StyD4I	CCNGG	3 cut(s)	256, 328, 498
TaaI	ACNGT	2 cut(s)	197, 230
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	1 cut(s)	36
TasI	AATT	4 cut(s)	342, 412, 426, 616
TatI	WGTACW	2 cut(s)	486, 560
TfiI	GAWTC	2 cut(s)	515, 566
Tru1I	TTAA	3 cut(s)	212, 452, 619
Tru9I	TTAA	3 cut(s)	212, 452, 619
TscAI	CASTG	1 cut(s)	537
TspDTI	ATGAA	1 cut(s)	566
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	86, 434
XapI	RAATTY	2 cut(s)	342, 426
XmiI	GTMKAC	3 cut(s)	118, 232, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.