Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

38385769 .. 38390613

Gene Structure 4845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38620.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGGGAGAGAATCCCTCCTGGAAGTTACTTCCAGTACCCACCTCCTGGAGTCCATGCTTCTCCACGCAGGTCTTCTCTCCCTGCAGACCGAGAGAGATATTTGGCTGAACTACTGGCAGAGAAGCAAAAGTTGGGACCATTCCTGCAAATATTTCCCCAATGTAGCAGACTTCTAAATCATGAGATCAGACGAGTATCACGCTTCAATCAAACTCTTGCAGATCATGAGAGATTTGAGCATGACAGTCCATTTAGGTCATTAAGTCAAAACGCGAATGGTAGACCAATGGATTTGGAGGGATGGCCAGGAACACACATGGAGGACAATGGACATATCCAGAGAATGGCCCCGTTCCAATCTCCTTCTATGGGCTGGCCTGGGGCGCAAGGAATTCCAGCCACCCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCAGTTGACAAATATCCACATTACAATTTTGTTGGCCGAATTTTGGGACCACGTGGGAACTCCTTAAAAAGAGTTGAAGCCATGACAGAGTGCAGGGTGTACATCCGAGGCCAGGGCTCTGTGAAGGATTCTGTAAAGGAAGAGAAATTAAAAGATAAGCCTGGATATGAACATCTTAATGAGCCGTTGCATGTGTTGGTGGAGGCTGAATTTCCGGAGGATATAATCAACGCTCGGTTGGATCGATCGACTTCGCAGTGGCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

236

Amino Acids

26.95

Weight (kDa)

8.85

Isoelectric Point (pI)

53.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	60
AccB7I	CCANNNNNTGG	2 cut(s)	47, 346
AccI	GTMKAC	1 cut(s)	283
AccII	CGCG	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	652
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	2 cut(s)	305, 472
AcsI	RAATTY	3 cut(s)	393, 477, 647
AcvI	CACGTG	1 cut(s)	491
AfaI	GTAC	2 cut(s)	38, 539
AfiI	CCNNNNNNNGG	5 cut(s)	47, 346, 371, 481, 550
AgsI	TTSAA	2 cut(s)	208, 515
AjnI	CCWGG	6 cut(s)	19, 46, 307, 379, 549, 598
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AlwI	GGATC	1 cut(s)	687
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	5 cut(s)	305, 348, 377, 472, 547
ApoI	RAATTY	3 cut(s)	393, 477, 647
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	137, 349, 485
AvaII	GGWCC	2 cut(s)	137, 485
BalI	TGGCCA	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	557
BbrPI	CACGTG	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	66
BccI	CCATC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	6 cut(s)	21, 48, 309, 381, 551, 600
BfaI	CTAG	1 cut(s)	706
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	60
Bme1390I	CCNGG	6 cut(s)	21, 48, 309, 381, 551, 600
Bme18I	GGWCC	2 cut(s)	137, 485
BmgT120I	GGNCC	3 cut(s)	137, 349, 485
BmiI	GGNNCC	3 cut(s)	138, 351, 486
BmrFI	CCNGG	6 cut(s)	21, 48, 309, 381, 551, 600
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	69
Bsa29I	ATCGAT	1 cut(s)	682
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	3 cut(s)	380, 544, 550
BsaWI	WCCGGW	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 346, 371, 481, 550
Bse1I	ACTGG	3 cut(s)	34, 120, 440
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	6 cut(s)	21, 48, 309, 381, 551, 600
BseCI	ATCGAT	1 cut(s)	682
BseDI	CCNNGG	3 cut(s)	380, 544, 550
BseGI	GGATG	2 cut(s)	308, 540
BseLI	CCNNNNNNNGG	5 cut(s)	47, 346, 371, 481, 550
BseNI	ACTGG	3 cut(s)	34, 120, 440
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	686
BshFI	GGCC	5 cut(s)	307, 350, 379, 474, 549
BshVI	ATCGAT	1 cut(s)	682
BsiEI	CGRYCG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	2 cut(s)	150, 498
BslI	CCNNNNNNNGG	5 cut(s)	47, 346, 371, 481, 550
BsmFI	GGGAC	2 cut(s)	150, 498
BsnI	GGCC	5 cut(s)	307, 350, 379, 474, 549
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp13I	TCCGGA	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	186, 223, 679, 683
BspANI	GGCC	5 cut(s)	307, 350, 379, 474, 549
BspDI	ATCGAT	1 cut(s)	682
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	2 cut(s)	181, 226
BspLI	GGNNCC	3 cut(s)	138, 351, 486
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	687
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	34, 120, 440
BssECI	CCNNGG	3 cut(s)	380, 544, 550
BssMI	GATC	4 cut(s)	186, 223, 679, 683
Bst2UI	CCWGG	6 cut(s)	21, 48, 309, 381, 551, 600
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	573
BstAUI	TGTACA	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	308, 540
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	388
BstKTI	GATC	4 cut(s)	189, 226, 682, 686
BstMBI	GATC	4 cut(s)	186, 223, 679, 683
BstMCI	CGRYCG	1 cut(s)	686
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	6 cut(s)	21, 48, 309, 381, 551, 600
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	6 cut(s)	19, 46, 307, 379, 549, 598
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	66
Bsu15I	ATCGAT	1 cut(s)	682
BsuRI	GGCC	5 cut(s)	307, 350, 379, 474, 549
BsuTUI	ATCGAT	1 cut(s)	682
BtsCI	GGATG	2 cut(s)	308, 540
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	1 cut(s)	701
BveI	ACCTGC	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	377
CciI	TCATGA	2 cut(s)	181, 226
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	137, 349, 485
ClaI	ATCGAT	1 cut(s)	682
Csp6I	GTAC	2 cut(s)	37, 538
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	7 cut(s)	56, 182, 227, 242, 319, 520, 629
CviQI	GTAC	2 cut(s)	37, 538
DpnI	GATC	4 cut(s)	188, 225, 681, 685
DpnII	GATC	4 cut(s)	186, 223, 679, 683
EaeI	YGGCCR	2 cut(s)	305, 472
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	137, 485
Eco72I	CACGTG	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	393
EcoRII	CCWGG	6 cut(s)	19, 46, 307, 379, 549, 598
EcoT38I	GRGCYC	1 cut(s)	557
FaeI	CATG	7 cut(s)	59, 185, 230, 245, 322, 523, 632
FaqI	GGGAC	2 cut(s)	150, 498
FatI	CATG	7 cut(s)	55, 181, 226, 241, 318, 519, 628
FblI	GTMKAC	1 cut(s)	283
FokI	GGATG	2 cut(s)	315, 527
FriOI	GRGCYC	1 cut(s)	557
FspBI	CTAG	1 cut(s)	706
GlaI	GCGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	5 cut(s)	307, 350, 379, 474, 549
HapII	CCGG	1 cut(s)	653
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	7 cut(s)	59, 185, 230, 245, 322, 523, 632
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	3 cut(s)	12, 51, 566
HpaII	CCGG	1 cut(s)	653
Hpy166II	GTNNAC	3 cut(s)	284, 445, 538
Hpy188I	TCNGA	2 cut(s)	191, 545
Hpy188III	TCNNGA	4 cut(s)	182, 227, 340, 653
Hpy8I	GTNNAC	3 cut(s)	284, 445, 538
HpyAV	CCTTC	2 cut(s)	375, 556
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	5 cut(s)	86, 148, 221, 531, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	7 cut(s)	59, 185, 230, 245, 322, 523, 632
HspAI	GCGC	1 cut(s)	386
Kpn2I	TCCGGA	1 cut(s)	652
Kzo9I	GATC	4 cut(s)	186, 223, 679, 683
MaeI	CTAG	1 cut(s)	706
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	188, 225, 681, 685
MboI	GATC	4 cut(s)	186, 223, 679, 683
MboII	GAAGA	2 cut(s)	66, 590
MhlI	GDGCHC	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	5 cut(s)	393, 463, 477, 584, 647
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	1 cut(s)	657
MnlI	CCTC	7 cut(s)	27, 54, 292, 316, 539, 634, 649
Mox20I	TGGCCA	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	652
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	4 cut(s)	263, 503, 587, 615
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	6 cut(s)	21, 48, 309, 381, 551, 600
MvaI	CCWGG	6 cut(s)	21, 48, 309, 381, 551, 600
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	4 cut(s)	186, 223, 679, 683
NlaIII	CATG	7 cut(s)	59, 185, 230, 245, 322, 523, 632
NlaIV	GGNNCC	3 cut(s)	138, 351, 486
NspI	RCATGY	1 cut(s)	632
PagI	TCATGA	2 cut(s)	181, 226
PcsI	WCGNNNNNNNCGW	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	12, 566
PflMI	CCANNNNNTGG	2 cut(s)	47, 346
PfoI	TCCNGGA	2 cut(s)	19, 46
Ple19I	CGATCG	1 cut(s)	686
PleI	GAGTC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	491
PmlI	CACGTG	1 cut(s)	491
PpsI	GAGTC	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	491
Psp6I	CCWGG	6 cut(s)	19, 46, 307, 379, 549, 598
PspCI	CACGTG	1 cut(s)	491
PspGI	CCWGG	6 cut(s)	19, 46, 307, 379, 549, 598
PspN4I	GGNNCC	3 cut(s)	138, 351, 486
PspPI	GGNCC	3 cut(s)	137, 349, 485
PstI	CTGCAG	1 cut(s)	88
PvuI	CGATCG	1 cut(s)	686
RsaI	GTAC	2 cut(s)	38, 539
RsaNI	GTAC	2 cut(s)	37, 538
RseI	CAYNNNNRTG	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	263, 503, 587, 615
Sau3AI	GATC	4 cut(s)	186, 223, 679, 683
Sau96I	GGNCC	3 cut(s)	137, 349, 485
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	6 cut(s)	21, 48, 309, 381, 551, 600
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	4 cut(s)	46, 74, 260, 493
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	137, 485
SmiMI	CAYNNNNRTG	1 cut(s)	615
Sse9I	AATT	5 cut(s)	393, 463, 477, 584, 647
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	1 cut(s)	706
StyD4I	CCNGG	6 cut(s)	19, 46, 307, 379, 549, 598
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	2 cut(s)	682, 686
TaqII	GACCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	393, 463, 477, 584, 647
TatI	WGTACW	1 cut(s)	537
TfiI	GAWTC	2 cut(s)	12, 566
Tru1I	TTAA	4 cut(s)	263, 503, 587, 615
Tru9I	TTAA	4 cut(s)	263, 503, 587, 615
TscAI	CASTG	1 cut(s)	701
TspDTI	ATGAA	1 cut(s)	621
TspRI	CASTG	1 cut(s)	701
Van91I	CCANNNNNTGG	2 cut(s)	47, 346
VpaK11BI	GGWCC	2 cut(s)	137, 485
XapI	RAATTY	3 cut(s)	393, 477, 647
XceI	RCATGY	1 cut(s)	632
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.