Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Reverse (-)

40246597 .. 40253235

Gene Structure 6639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG352900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTGATAAATGTAGAACTTCTTTTGAGTTATCCAAGTGAAAATGATGCACCAGTGGAAAAGCCTACTTATGAAAAGATTATTCAAGGGATTCCGATCTCTCTGCCCCCACCTCCTCCTCTATCTCCTTCCCACCCACCCGCAAGTGGTCGAAATTGTGTGATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCACTCCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTACTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGGTTTTGCCGCTATGTAGCAGACTTCTAAGTCATGAGATCAGAAGGGTGTCGGGATTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTAAAAGAAAAGCCTGGATATGAACATCTTAATGAACCGTTGCATGTGTTGGTGGAGGCTGAATTTCCCGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATGCTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCAAGTCTAAGCCCAAGCATGTCACCCTTTAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

347

Amino Acids

38.95

Weight (kDa)

7.75

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	88 - 131	2.1e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	205 - 293	1.3e-20	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	342
Acc36I	ACCTGC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccI	GTMKAC	1 cut(s)	448
AciI	CCGC	2 cut(s)	141, 323
AcsI	RAATTY	4 cut(s)	174, 558, 642, 812
AcvI	CACGTG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	946, 1012
AfiI	CCNNNNNNNGG	5 cut(s)	146, 209, 511, 646, 715
AgsI	TTSAA	4 cut(s)	86, 373, 524, 680
AjnI	CCWGG	3 cut(s)	181, 544, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	281, 313
AluBI	AGCT	2 cut(s)	919, 932
AluI	AGCT	2 cut(s)	919, 932
Alw26I	GTCTC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	542, 637
ApoI	RAATTY	4 cut(s)	174, 558, 642, 812
Asp700I	GAANNNNTTC	1 cut(s)	718
AspS9I	GGNCC	3 cut(s)	302, 514, 650
AsuC2I	CCSGG	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	990
AvaII	GGWCC	3 cut(s)	302, 514, 650
BanII	GRGCYC	2 cut(s)	965, 977
BbrPI	CACGTG	1 cut(s)	656
BbvCI	CCTCAGC	1 cut(s)	920
BccI	CCATC	4 cut(s)	157, 462, 505, 529
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BciT130I	CCWGG	3 cut(s)	183, 546, 765
BciVI	GTATCC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	281, 863
BfuAI	ACCTGC	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	210
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme1390I	CCNGG	4 cut(s)	183, 210, 546, 765
Bme18I	GGWCC	3 cut(s)	302, 514, 650
BmgT120I	GGNCC	3 cut(s)	302, 514, 650
BmiI	GGNNCC	3 cut(s)	303, 516, 651
BmrFI	CCNGG	4 cut(s)	183, 210, 546, 765
BmsI	GCATC	2 cut(s)	37, 230
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
BpmI	CTGGAG	1 cut(s)	270
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	2 cut(s)	422, 860
BpuMI	CCSGG	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	656
BsaBI	GATNNNNATC	1 cut(s)	95
BsaHI	GRCGYC	1 cut(s)	213
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	182, 545, 709
BsaWI	WCCGGW	1 cut(s)	604
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 209, 511, 646, 715
Bse1I	ACTGG	2 cut(s)	53, 196
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	3 cut(s)	183, 546, 765
BseDI	CCNNGG	3 cut(s)	182, 545, 709
BseGI	GGATG	3 cut(s)	473, 516, 892
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	5 cut(s)	146, 209, 511, 646, 715
BseMII	CTCAG	1 cut(s)	911
BseNI	ACTGG	2 cut(s)	53, 196
BseRI	GAGGAG	2 cut(s)	105, 108
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	544, 639
BsiSI	CCGG	2 cut(s)	210, 605
BslFI	GGGAC	4 cut(s)	200, 315, 500, 663
BslI	CCNNNNNNNGG	5 cut(s)	146, 209, 511, 646, 715
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	4 cut(s)	200, 315, 500, 663
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	544, 639
Bso31I	GGTCTC	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	965, 977
Bsp143I	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
BspACI	CCGC	2 cut(s)	141, 323
BspANI	GGCC	2 cut(s)	544, 639
BspCNI	CTCAG	1 cut(s)	912
BspHI	TCATGA	2 cut(s)	346, 391
BspLI	GGNNCC	3 cut(s)	303, 516, 651
BspMI	ACCTGC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	53, 196
BssECI	CCNNGG	3 cut(s)	182, 545, 709
BssMI	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
BssNI	GRCGYC	1 cut(s)	213
Bst2UI	CCWGG	3 cut(s)	183, 546, 765
Bst4CI	ACNGT	2 cut(s)	789, 1010
Bst6I	CTCTTC	2 cut(s)	738, 951
BstACI	GRCGYC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	319
BstBAI	YACGTR	1 cut(s)	656
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	3 cut(s)	341, 920, 983
BstF5I	GGATG	3 cut(s)	473, 516, 892
BstKTI	GATC	6 cut(s)	99, 256, 354, 391, 425, 901
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 550
BstNI	CCWGG	3 cut(s)	183, 546, 765
BstNSI	RCATGY	2 cut(s)	797, 997
BstSCI	CCNGG	4 cut(s)	181, 208, 544, 763
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	544, 639
BtsCI	GGATG	3 cut(s)	473, 516, 892
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	60, 858
BveI	ACCTGC	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	838
CciI	TCATGA	2 cut(s)	346, 391
Cfr13I	GGNCC	3 cut(s)	302, 514, 650
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	945, 1011
CspCI	CAANNNNNGTGG	2 cut(s)	556, 591
CviAII	CATG	5 cut(s)	347, 392, 685, 794, 994
CviQI	GTAC	2 cut(s)	945, 1011
DdeI	CTNAG	3 cut(s)	341, 920, 983
DpnI	GATC	6 cut(s)	98, 255, 353, 390, 424, 900
DpnII	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
DrdI	GACNNNNNNGTC	1 cut(s)	342
DseDI	GACNNNNNNGTC	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	738, 951
EarI	CTCTTC	2 cut(s)	738, 951
Eco24I	GRGCYC	2 cut(s)	965, 977
Eco31I	GGTCTC	1 cut(s)	240
Eco47I	GGWCC	3 cut(s)	302, 514, 650
Eco72I	CACGTG	1 cut(s)	656
EcoRI	GAATTC	2 cut(s)	174, 558
EcoRII	CCWGG	3 cut(s)	181, 544, 763
EcoT38I	GRGCYC	2 cut(s)	965, 977
FaeI	CATG	5 cut(s)	350, 395, 688, 797, 997
FaqI	GGGAC	4 cut(s)	200, 315, 500, 663
FatI	CATG	5 cut(s)	346, 391, 684, 793, 993
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	3 cut(s)	480, 523, 899
FriOI	GRGCYC	2 cut(s)	965, 977
Fsp4HI	GCNGC	1 cut(s)	323
FspBI	CTAG	2 cut(s)	281, 863
GluI	GCNGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	544, 639
HapII	CCGG	2 cut(s)	210, 605
HgaI	GACGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	5 cut(s)	350, 395, 688, 797, 997
HincII	GTYRAC	1 cut(s)	434
HindII	GTYRAC	1 cut(s)	434
HinfI	GANTC	4 cut(s)	91, 369, 731, 890
HpaII	CCGG	2 cut(s)	210, 605
HphI	GGTGA	1 cut(s)	990
Hpy166II	GTNNAC	3 cut(s)	434, 449, 610
Hpy188I	TCNGA	3 cut(s)	96, 356, 710
Hpy188III	TCNNGA	7 cut(s)	249, 257, 347, 366, 392, 474, 818
Hpy8I	GTNNAC	3 cut(s)	434, 449, 610
HpyAV	CCTTC	6 cut(s)	138, 255, 351, 540, 721, 881
HpyCH4III	ACNGT	2 cut(s)	789, 1010
HpyCH4IV	ACGT	2 cut(s)	655, 1024
HpyCH4V	TGCA	8 cut(s)	50, 221, 313, 386, 481, 553, 793, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 550
HpyF3I	CTNAG	3 cut(s)	341, 920, 983
HpySE526I	ACGT	2 cut(s)	655, 1024
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	350, 395, 688, 797, 997
Kzo9I	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
LweI	GCATC	2 cut(s)	37, 230
MaeI	CTAG	2 cut(s)	281, 863
MaeII	ACGT	2 cut(s)	655, 1024
MaeIII	GTNAC	2 cut(s)	188, 996
MalI	GATC	6 cut(s)	98, 255, 353, 390, 424, 900
MboI	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
MboII	GAAGA	3 cut(s)	755, 833, 968
MhlI	GDGCHC	2 cut(s)	965, 977
MluCI	AATT	8 cut(s)	154, 174, 558, 628, 642, 749, 812, 926
MlyI	GAGTC	1 cut(s)	899
MmeI	TCCRAC	2 cut(s)	529, 587
MroXI	GAANNNNTTC	1 cut(s)	718
MseI	TTAA	4 cut(s)	752, 780, 939, 1005
MslI	CAYNNNNRTG	2 cut(s)	441, 780
MspA1I	CMGCKG	1 cut(s)	919
MspI	CCGG	2 cut(s)	210, 605
MspR9I	CCNGG	4 cut(s)	183, 210, 546, 765
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	3 cut(s)	183, 546, 765
MwoI	GCNNNNNNNGC	2 cut(s)	319, 550
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
NlaIII	CATG	5 cut(s)	350, 395, 688, 797, 997
NlaIV	GGNNCC	3 cut(s)	303, 516, 651
NmuCI	GTSAC	1 cut(s)	996
NspI	RCATGY	2 cut(s)	797, 997
PagI	TCATGA	2 cut(s)	346, 391
PctI	GAATGC	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	3 cut(s)	91, 369, 731
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	898
PmaCI	CACGTG	1 cut(s)	656
PmlI	CACGTG	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	898
Ppu21I	YACGTR	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	181, 544, 763
PspCI	CACGTG	1 cut(s)	656
PspGI	CCWGG	3 cut(s)	181, 544, 763
PspN4I	GGNNCC	3 cut(s)	303, 516, 651
PspPI	GGNCC	3 cut(s)	302, 514, 650
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	2 cut(s)	946, 1012
RsaNI	GTAC	2 cut(s)	945, 1011
RseI	CAYNNNNRTG	2 cut(s)	441, 780
SaqAI	TTAA	4 cut(s)	752, 780, 939, 1005
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	6 cut(s)	96, 253, 351, 388, 422, 898
Sau96I	GGNCC	3 cut(s)	302, 514, 650
SchI	GAGTC	1 cut(s)	899
ScrFI	CCNGG	4 cut(s)	183, 210, 546, 765
SduI	GDGCHC	2 cut(s)	965, 977
SetI	ASST	9 cut(s)	115, 236, 318, 433, 658, 873, 921, 934, 1027
SfaNI	GCATC	2 cut(s)	37, 230
SinI	GGWCC	3 cut(s)	302, 514, 650
SmiMI	CAYNNNNRTG	2 cut(s)	441, 780
SmlI	CTYRAG	2 cut(s)	401, 875
SmoI	CTYRAG	2 cut(s)	401, 875
Sse9I	AATT	8 cut(s)	154, 174, 558, 628, 642, 749, 812, 926
SsiI	CCGC	2 cut(s)	141, 323
SspMI	CTAG	2 cut(s)	281, 863
StyD4I	CCNGG	4 cut(s)	181, 208, 544, 763
TaaI	ACNGT	2 cut(s)	789, 1010
TaiI	ACGT	2 cut(s)	658, 1027
TaqI	TCGA	4 cut(s)	151, 256, 533, 897
TasI	AATT	8 cut(s)	154, 174, 558, 628, 642, 749, 812, 926
TatI	WGTACW	1 cut(s)	1010
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	3 cut(s)	91, 369, 731
Tru1I	TTAA	4 cut(s)	752, 780, 939, 1005
Tru9I	TTAA	4 cut(s)	752, 780, 939, 1005
TscAI	CASTG	2 cut(s)	60, 858
TseFI	GTSAC	1 cut(s)	996
Tsp45I	GTSAC	1 cut(s)	996
TspDTI	ATGAA	5 cut(s)	87, 408, 786, 798, 1034
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	2 cut(s)	60, 858
Van91I	CCANNNNNTGG	1 cut(s)	511
VpaK11BI	GGWCC	3 cut(s)	302, 514, 650
XapI	RAATTY	4 cut(s)	174, 558, 642, 812
XceI	RCATGY	2 cut(s)	797, 997
XmiI	GTMKAC	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	2 cut(s)	281, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.