Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Reverse (-)

39534470 .. 39538905

Gene Structure 4436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGAGAGAGAATTCCTCCTGGGAGTTACTTCCAGTATCCCCCTCCCGGCGTCCCTGCATCTCCACACAGGTCTCCGCTCCCTTCTGGAGATCGAGAAAGATATTTGGCTGAACTTCTAGCAGAGAAGCAAAAGTTGGGACCATTTGTGCAGGTTTTGCCGCTATGTAGCAGACTTCTAAGTCATGAGATCAGAAGGGTGTCGGGCTTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTAAAAGAAAAGCCTGGATATGAACATCTTAATGAGCCGTTGCATGTGTTGGTGGAGGCTGAATTTCCCGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATGCTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCAAGTCTAAGCCCAAGCATGTCACCCTTTAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

293

Amino Acids

33.15

Weight (kDa)

8.72

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	34 - 77	1.6e-10	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	151 - 239	9.2e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	2 cut(s)	77, 161
AcsI	RAATTY	4 cut(s)	12, 396, 480, 650
AcvI	CACGTG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	2 cut(s)	784, 850
AfiI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
AgsI	TTSAA	3 cut(s)	211, 362, 518
AjnI	CCWGG	3 cut(s)	19, 382, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	2 cut(s)	757, 770
AluI	AGCT	2 cut(s)	757, 770
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	380, 475
ApoI	RAATTY	4 cut(s)	12, 396, 480, 650
Asp700I	GAANNNNTTC	1 cut(s)	556
AspS9I	GGNCC	3 cut(s)	140, 352, 488
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	828
AvaII	GGWCC	3 cut(s)	140, 352, 488
BanII	GRGCYC	2 cut(s)	803, 815
BbrPI	CACGTG	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	758
BccI	CCATC	3 cut(s)	300, 343, 367
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	3 cut(s)	21, 384, 603
BciVI	GTATCC	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	119, 701
BfuAI	ACCTGC	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	4 cut(s)	21, 48, 384, 603
Bme18I	GGWCC	3 cut(s)	140, 352, 488
BmgT120I	GGNCC	3 cut(s)	140, 352, 488
BmiI	GGNNCC	3 cut(s)	141, 354, 489
BmrFI	CCNGG	4 cut(s)	21, 48, 384, 603
BmsI	GCATC	1 cut(s)	68
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	2 cut(s)	260, 698
BpuMI	CCSGG	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	20, 383, 547
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	3 cut(s)	21, 384, 603
BseDI	CCNNGG	3 cut(s)	20, 383, 547
BseGI	GGATG	3 cut(s)	311, 354, 730
BseLI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	382, 477
BsiSI	CCGG	2 cut(s)	48, 443
BslFI	GGGAC	4 cut(s)	38, 153, 338, 501
BslI	CCNNNNNNNGG	4 cut(s)	47, 349, 484, 553
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	4 cut(s)	38, 153, 338, 501
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	382, 477
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	803, 815
Bsp143I	GATC	5 cut(s)	91, 189, 226, 260, 736
BspACI	CCGC	2 cut(s)	77, 161
BspANI	GGCC	2 cut(s)	382, 477
BspCNI	CTCAG	1 cut(s)	750
BspHI	TCATGA	2 cut(s)	184, 229
BspLI	GGNNCC	3 cut(s)	141, 354, 489
BspMI	ACCTGC	1 cut(s)	142
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	3 cut(s)	20, 383, 547
BssMI	GATC	5 cut(s)	91, 189, 226, 260, 736
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	3 cut(s)	21, 384, 603
Bst4CI	ACNGT	1 cut(s)	848
Bst6I	CTCTTC	2 cut(s)	576, 789
BstACI	GRCGYC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	676
BstDEI	CTNAG	3 cut(s)	179, 758, 821
BstF5I	GGATG	3 cut(s)	311, 354, 730
BstKTI	GATC	5 cut(s)	94, 192, 229, 263, 739
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	5 cut(s)	91, 189, 226, 260, 736
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 388
BstNI	CCWGG	3 cut(s)	21, 384, 603
BstNSI	RCATGY	2 cut(s)	635, 835
BstSCI	CCNGG	4 cut(s)	19, 46, 382, 601
BsuI	GTATCC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	382, 477
BtsCI	GGATG	3 cut(s)	311, 354, 730
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	1 cut(s)	676
CciI	TCATGA	2 cut(s)	184, 229
Cfr13I	GGNCC	3 cut(s)	140, 352, 488
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	783, 849
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	5 cut(s)	185, 230, 523, 632, 832
CviQI	GTAC	2 cut(s)	783, 849
DdeI	CTNAG	3 cut(s)	179, 758, 821
DpnI	GATC	5 cut(s)	93, 191, 228, 262, 738
DpnII	GATC	5 cut(s)	91, 189, 226, 260, 736
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	576, 789
EarI	CTCTTC	2 cut(s)	576, 789
Eco24I	GRGCYC	2 cut(s)	803, 815
Eco31I	GGTCTC	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	140, 352, 488
Eco72I	CACGTG	1 cut(s)	494
EcoRI	GAATTC	2 cut(s)	12, 396
EcoRII	CCWGG	3 cut(s)	19, 382, 601
EcoT38I	GRGCYC	2 cut(s)	803, 815
FaeI	CATG	5 cut(s)	188, 233, 526, 635, 835
FaqI	GGGAC	4 cut(s)	38, 153, 338, 501
FatI	CATG	5 cut(s)	184, 229, 522, 631, 831
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	3 cut(s)	318, 361, 737
FriOI	GRGCYC	2 cut(s)	803, 815
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	2 cut(s)	119, 701
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	382, 477
HapII	CCGG	2 cut(s)	48, 443
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	5 cut(s)	188, 233, 526, 635, 835
HincII	GTYRAC	1 cut(s)	272
HindII	GTYRAC	1 cut(s)	272
HinfI	GANTC	2 cut(s)	569, 728
HpaII	CCGG	2 cut(s)	48, 443
HphI	GGTGA	1 cut(s)	828
Hpy166II	GTNNAC	3 cut(s)	272, 287, 448
Hpy188I	TCNGA	2 cut(s)	194, 548
Hpy188III	TCNNGA	6 cut(s)	87, 95, 185, 230, 312, 656
Hpy8I	GTNNAC	3 cut(s)	272, 287, 448
HpyAV	CCTTC	5 cut(s)	93, 189, 378, 559, 719
HpyCH4III	ACNGT	1 cut(s)	848
HpyCH4IV	ACGT	2 cut(s)	493, 862
HpyCH4V	TGCA	7 cut(s)	59, 151, 224, 319, 391, 631, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 388
HpyF3I	CTNAG	3 cut(s)	179, 758, 821
HpySE526I	ACGT	2 cut(s)	493, 862
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	188, 233, 526, 635, 835
Kzo9I	GATC	5 cut(s)	91, 189, 226, 260, 736
LmnI	GCTCC	1 cut(s)	84
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	2 cut(s)	119, 701
MaeII	ACGT	2 cut(s)	493, 862
MaeIII	GTNAC	2 cut(s)	26, 834
MalI	GATC	5 cut(s)	93, 191, 228, 262, 738
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	5 cut(s)	91, 189, 226, 260, 736
MboII	GAAGA	3 cut(s)	593, 671, 806
MhlI	GDGCHC	2 cut(s)	803, 815
MluCI	AATT	7 cut(s)	12, 396, 466, 480, 587, 650, 764
MlyI	GAGTC	1 cut(s)	737
MmeI	TCCRAC	2 cut(s)	367, 425
MnlI	CCTC	8 cut(s)	27, 54, 295, 319, 542, 637, 753, 783
MroXI	GAANNNNTTC	1 cut(s)	556
MseI	TTAA	4 cut(s)	590, 618, 777, 843
MslI	CAYNNNNRTG	2 cut(s)	279, 618
MspA1I	CMGCKG	1 cut(s)	757
MspI	CCGG	2 cut(s)	48, 443
MspR9I	CCNGG	4 cut(s)	21, 48, 384, 603
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	3 cut(s)	21, 384, 603
MwoI	GCNNNNNNNGC	2 cut(s)	157, 388
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	91, 189, 226, 260, 736
NlaIII	CATG	5 cut(s)	188, 233, 526, 635, 835
NlaIV	GGNNCC	3 cut(s)	141, 354, 489
NmuCI	GTSAC	1 cut(s)	834
NspI	RCATGY	2 cut(s)	635, 835
PagI	TCATGA	2 cut(s)	184, 229
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	1 cut(s)	569
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	736
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	736
Ppu21I	YACGTR	1 cut(s)	494
Psp6I	CCWGG	3 cut(s)	19, 382, 601
PspCI	CACGTG	1 cut(s)	494
PspGI	CCWGG	3 cut(s)	19, 382, 601
PspN4I	GGNNCC	3 cut(s)	141, 354, 489
PspPI	GGNCC	3 cut(s)	140, 352, 488
PvuII	CAGCTG	1 cut(s)	757
RsaI	GTAC	2 cut(s)	784, 850
RsaNI	GTAC	2 cut(s)	783, 849
RseI	CAYNNNNRTG	2 cut(s)	279, 618
SaqAI	TTAA	4 cut(s)	590, 618, 777, 843
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	5 cut(s)	91, 189, 226, 260, 736
Sau96I	GGNCC	3 cut(s)	140, 352, 488
SchI	GAGTC	1 cut(s)	737
ScrFI	CCNGG	4 cut(s)	21, 48, 384, 603
SduI	GDGCHC	2 cut(s)	803, 815
SetI	ASST	8 cut(s)	74, 156, 271, 496, 711, 759, 772, 865
SfaNI	GCATC	1 cut(s)	68
SinI	GGWCC	3 cut(s)	140, 352, 488
SmiMI	CAYNNNNRTG	2 cut(s)	279, 618
SmlI	CTYRAG	2 cut(s)	239, 713
SmoI	CTYRAG	2 cut(s)	239, 713
Sse9I	AATT	7 cut(s)	12, 396, 466, 480, 587, 650, 764
SsiI	CCGC	2 cut(s)	77, 161
SspMI	CTAG	2 cut(s)	119, 701
StyD4I	CCNGG	4 cut(s)	19, 46, 382, 601
TaaI	ACNGT	1 cut(s)	848
TaiI	ACGT	2 cut(s)	496, 865
TaqI	TCGA	3 cut(s)	94, 371, 735
TasI	AATT	7 cut(s)	12, 396, 466, 480, 587, 650, 764
TatI	WGTACW	1 cut(s)	848
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	4 cut(s)	590, 618, 777, 843
Tru9I	TTAA	4 cut(s)	590, 618, 777, 843
TscAI	CASTG	1 cut(s)	696
TseFI	GTSAC	1 cut(s)	834
Tsp45I	GTSAC	1 cut(s)	834
TspDTI	ATGAA	3 cut(s)	246, 624, 872
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	696
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	3 cut(s)	140, 352, 488
XapI	RAATTY	4 cut(s)	12, 396, 480, 650
XceI	RCATGY	2 cut(s)	635, 835
XmiI	GTMKAC	1 cut(s)	286
XmnI	GAANNNNTTC	1 cut(s)	556
XspI	CTAG	2 cut(s)	119, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.