Rh7DG331900

KH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005725
Physical Location & Seq
Reverse (-)
40595021 .. 40598980
3960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG331900.1

Sequence Viewer

Length: 777 bp
ATGTCTACAGTTCACCCCTATATAGTAGATTCCTATATTTTGGTCCCCGTTACATTCTATCTAATTTGTTCTTTCGTGCCAGAGATCAGAAGGGTGTCGGGCTTCAATCAAACTCTTGCAGATCATGAAATACTTGAGCGTGAAAGTCCATACAGATCATTAGGTCAACACACAAATGGTAGACCAATGGATTTGGAGGGATGGTCAGGAATGCAAATGGAGGAAAATGGACATATCCAACGGATGGTCCCGTTTCAATCTCCTTCGATGGTTTGGCCTGGGGTGCAAGGAATTCCAACCACTCCTATTGTAAAGAGAGTTATTAGACTTGATGTTCCGGTGGACAAATATCCACATTACAATTTCGTAGGCCGAATTTTGGGACCACGTGGGAACTCCCTAAAAAGAGTTGAAGCCATGACAGAATGTAGGGTGTATATCCGAGGAAAGGGTTCTGTGAAGGATTCGGTAAAGGAAGAGAAATTAAAAGAAAAGCCTGGATATGAACATCTTAATGAGCCGTTGCATGTGTTGGTGGAGGCTGAATTTCCCGAAGATATAATCAATGCTCGCTTGGACTATGCAGTGGCTATGCTAGAGAACCTTCTCAAGCCTGTGGATGAGTCTTTCGATCACTATAAGAAGCAACAGCTGAGGGAATTAGCTATGCTTAATGGTACATTGAGGGAAGAGAGCCCAAGTATGAGCCCAAGTCTAAGCCCAAGCATGTCACCCTTTAACAGTACAGGAATGAAACGTGCCAAGACAGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 STAR_dimer

Protein Analysis

258

Amino Acids

29.37

Weight (kDa)

7.1

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH-I_KHDC4-BBP PF22675 116 - 204 7.1e-21 KHDC4/BBP-like, KH-domain type I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AccI GTMKAC 2 cut(s) 5, 181
AcsI RAATTY 3 cut(s) 291, 375, 545
AcvI CACGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 679, 745
AfiI CCNNNNNNNGG 3 cut(s) 244, 379, 448
AgsI TTSAA 3 cut(s) 106, 257, 413
AjnI CCWGG 2 cut(s) 277, 496
AluBI AGCT 2 cut(s) 652, 665
AluI AGCT 2 cut(s) 652, 665
AoxI GGCC 2 cut(s) 275, 370
ApoI RAATTY 3 cut(s) 291, 375, 545
Asp700I GAANNNNTTC 1 cut(s) 451
AspS9I GGNCC 3 cut(s) 43, 247, 383
AsuHPI GGTGA 2 cut(s) 5, 723
AvaII GGWCC 3 cut(s) 43, 247, 383
BanII GRGCYC 2 cut(s) 698, 710
BbrPI CACGTG 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 653
BccI CCATC 3 cut(s) 195, 238, 262
BceAI ACGGC 1 cut(s) 505
BciT130I CCWGG 2 cut(s) 279, 498
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 6
Bme1390I CCNGG 2 cut(s) 279, 498
Bme18I GGWCC 3 cut(s) 43, 247, 383
BmgT120I GGNCC 3 cut(s) 43, 247, 383
BmiI GGNNCC 3 cut(s) 45, 249, 384
BmrFI CCNGG 2 cut(s) 279, 498
Bpu10I CCTNAGC 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 155, 593
BsaAI YACGTR 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 278, 442
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 379, 448
BseBI CCWGG 2 cut(s) 279, 498
BseDI CCNNGG 2 cut(s) 278, 442
BseGI GGATG 3 cut(s) 206, 249, 625
BseLI CCNNNNNNNGG 3 cut(s) 244, 379, 448
BseMII CTCAG 1 cut(s) 644
BshFI GGCC 2 cut(s) 277, 372
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 3 cut(s) 29, 233, 396
BslI CCNNNNNNNGG 3 cut(s) 244, 379, 448
BsmFI GGGAC 3 cut(s) 29, 233, 396
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 2 cut(s) 277, 372
Bsp1286I GDGCHC 2 cut(s) 698, 710
Bsp143I GATC 4 cut(s) 84, 121, 155, 631
BspANI GGCC 2 cut(s) 277, 372
BspCNI CTCAG 1 cut(s) 645
BspHI TCATGA 1 cut(s) 124
BspLI GGNNCC 3 cut(s) 45, 249, 384
BssECI CCNNGG 2 cut(s) 278, 442
BssMI GATC 4 cut(s) 84, 121, 155, 631
Bst2UI CCWGG 2 cut(s) 279, 498
Bst4CI ACNGT 2 cut(s) 10, 743
Bst6I CTCTTC 2 cut(s) 471, 684
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 2 cut(s) 653, 716
BstF5I GGATG 3 cut(s) 206, 249, 625
BstKTI GATC 4 cut(s) 87, 124, 158, 634
BstMBI GATC 4 cut(s) 84, 121, 155, 631
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 2 cut(s) 279, 498
BstNSI RCATGY 2 cut(s) 530, 730
BstSCI CCNGG 2 cut(s) 277, 496
BstSFI CTRYAG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 277, 372
BtsCI GGATG 3 cut(s) 206, 249, 625
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 571
CciI TCATGA 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 43, 247, 383
Csp6I GTAC 2 cut(s) 678, 744
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 125, 418, 527, 727
CviQI GTAC 2 cut(s) 678, 744
DdeI CTNAG 2 cut(s) 653, 716
DpnI GATC 4 cut(s) 86, 123, 157, 633
DpnII GATC 4 cut(s) 84, 121, 155, 631
Eam1104I CTCTTC 2 cut(s) 471, 684
EarI CTCTTC 2 cut(s) 471, 684
Eco24I GRGCYC 2 cut(s) 698, 710
Eco47I GGWCC 3 cut(s) 43, 247, 383
Eco72I CACGTG 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 291
EcoRII CCWGG 2 cut(s) 277, 496
EcoT38I GRGCYC 2 cut(s) 698, 710
FaeI CATG 4 cut(s) 128, 421, 530, 730
FaqI GGGAC 3 cut(s) 29, 233, 396
FatI CATG 4 cut(s) 124, 417, 526, 726
FblI GTMKAC 2 cut(s) 5, 181
FokI GGATG 3 cut(s) 213, 256, 632
FriOI GRGCYC 2 cut(s) 698, 710
FspBI CTAG 1 cut(s) 596
HaeIII GGCC 2 cut(s) 277, 372
HapII CCGG 1 cut(s) 338
Hin1II CATG 4 cut(s) 128, 421, 530, 730
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 3 cut(s) 29, 464, 623
HpaII CCGG 1 cut(s) 338
HphI GGTGA 2 cut(s) 5, 723
Hpy166II GTNNAC 5 cut(s) 6, 13, 167, 182, 343
Hpy188I TCNGA 2 cut(s) 89, 443
Hpy188III TCNNGA 3 cut(s) 125, 207, 551
Hpy8I GTNNAC 5 cut(s) 6, 13, 167, 182, 343
HpyAV CCTTC 4 cut(s) 84, 273, 454, 614
HpyCH4III ACNGT 2 cut(s) 10, 743
HpyCH4IV ACGT 2 cut(s) 388, 757
HpyCH4V TGCA 5 cut(s) 119, 214, 286, 526, 584
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 653, 716
HpySE526I ACGT 2 cut(s) 388, 757
Hsp92II CATG 4 cut(s) 128, 421, 530, 730
Kzo9I GATC 4 cut(s) 84, 121, 155, 631
MaeI CTAG 1 cut(s) 596
MaeII ACGT 2 cut(s) 388, 757
MaeIII GTNAC 2 cut(s) 49, 729
MalI GATC 4 cut(s) 86, 123, 157, 633
MboI GATC 4 cut(s) 84, 121, 155, 631
MboII GAAGA 3 cut(s) 488, 566, 701
MhlI GDGCHC 2 cut(s) 698, 710
MluCI AATT 7 cut(s) 63, 291, 361, 375, 482, 545, 659
MlyI GAGTC 1 cut(s) 632
MmeI TCCRAC 2 cut(s) 262, 320
MnlI CCTC 6 cut(s) 190, 214, 437, 532, 648, 678
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 4 cut(s) 485, 513, 672, 738
MslI CAYNNNNRTG 2 cut(s) 174, 513
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 279, 498
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 279, 498
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 4 cut(s) 84, 121, 155, 631
NlaIII CATG 4 cut(s) 128, 421, 530, 730
NlaIV GGNNCC 3 cut(s) 45, 249, 384
NmuCI GTSAC 1 cut(s) 729
NspI RCATGY 2 cut(s) 530, 730
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 29, 464
PflMI CCANNNNNTGG 1 cut(s) 244
PleI GAGTC 1 cut(s) 631
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
PpsI GAGTC 1 cut(s) 631
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 277, 496
PspCI CACGTG 1 cut(s) 389
PspGI CCWGG 2 cut(s) 277, 496
PspN4I GGNNCC 3 cut(s) 45, 249, 384
PspPI GGNCC 3 cut(s) 43, 247, 383
PvuII CAGCTG 1 cut(s) 652
RsaI GTAC 2 cut(s) 679, 745
RsaNI GTAC 2 cut(s) 678, 744
RseI CAYNNNNRTG 2 cut(s) 174, 513
SaqAI TTAA 4 cut(s) 485, 513, 672, 738
Sau3AI GATC 4 cut(s) 84, 121, 155, 631
Sau96I GGNCC 3 cut(s) 43, 247, 383
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 2 cut(s) 279, 498
SduI GDGCHC 2 cut(s) 698, 710
SetI ASST 6 cut(s) 166, 391, 606, 654, 667, 760
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 3 cut(s) 43, 247, 383
SmiMI CAYNNNNRTG 2 cut(s) 174, 513
SmlI CTYRAG 2 cut(s) 134, 608
SmoI CTYRAG 2 cut(s) 134, 608
Sse9I AATT 7 cut(s) 63, 291, 361, 375, 482, 545, 659
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 2 cut(s) 277, 496
TaaI ACNGT 2 cut(s) 10, 743
TaiI ACGT 2 cut(s) 391, 760
TaqI TCGA 2 cut(s) 266, 630
TasI AATT 7 cut(s) 63, 291, 361, 375, 482, 545, 659
TatI WGTACW 1 cut(s) 743
TfiI GAWTC 2 cut(s) 29, 464
Tru1I TTAA 4 cut(s) 485, 513, 672, 738
Tru9I TTAA 4 cut(s) 485, 513, 672, 738
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 729
Tsp45I GTSAC 1 cut(s) 729
TspDTI ATGAA 3 cut(s) 141, 519, 767
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 1 cut(s) 591
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 3 cut(s) 43, 247, 383
XapI RAATTY 3 cut(s) 291, 375, 545
XceI RCATGY 2 cut(s) 530, 730
XmiI GTMKAC 2 cut(s) 5, 181
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.