Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0005725

Physical Location & Seq

Genomic Coordinates Forward (+)

20721421 .. 20727250

Gene Structure 5830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21160.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTTAAACGATAAATACTCATGCTGTAGTAGGAATTTTGCCTCTTTGTTCACTCTCTCGCACCAACACCCGCCTCCAATAAGGGGCAGAAAAGATTTGAATCTCTCTGCCCCGACCTCCCTCTTCTCTCCTTCCCGTCCGTTGTTTTGTGGGTTATTTGACATAAACAGTAGTGCCTGTGTTATGGGAGAGAGAATCCCTCCTGGAAGTTACTTCCAGTACCCACCTCCTGGTGTCCATGCTTCTCCACACAGGTCTTCTCTCCCTGCAGATCGAGAGAGATATTTGGCTGAACTACTGGCAGAGAAGCAAAAGTTGGGACCATTCCTGCAAATATTGCCCCTATGTAGCAGACTTCTAAATCATGAGATCAGACAAATATCAGGCTTCAATCAAACTCCTGCAGATCGTGAAAGATTTACGCATGACAGTCCATTTAGGTCATTAAGTCAAAATGCGAATGGTAGACCAATGGATCTGGAGGGATGGCCAGGAATACACATGGAGGACAAGGGACATATCCAGAGAATGGCCCCATTCCAATCTCCTTCTATGGGATGGCTTGGGGGGCAAGGAATTCCAACCACCCCTATTGTAAAGAGAGTTATTAGACTTGATCTTCCCGTGGACAAATATCCACATTACAATTTTGTTGGCCGAATTTTGGGACCACGTGGGAACTCCTTAAAAAGAGTTGAAGCCATGACAGAGTGTAGGGTGTACATCCGAGGCCGGGGCTCAGTGAAGGATTCTGGAAAGGAAGAGAAATTAAAAGGCGAGCCTGGATATGAACATCTTAATGAGCCGTTGCACGTGTTGGTGGAGGCTGAATTTCCGGAGGATATAATCAATGCTCGCTTGGATCATGCAGTGGCAATACTCGAGAACCTTCTGAAGCCTGTGGACGAGTCCTTCGATCACTATAAGAAGCAACAACTTAGAGAATTGGCTATGCTGAACGGTACACTGAGGGAAGAGAGCCCTAGCATGAGCCCAAGTCTAAGCCCGAGCATGTCGCCCTTTAACAGTGCAGGGATGAAACGAGCCAAGACAGGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

354

Amino Acids

39.63

Weight (kDa)

9.06

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09660 AT1G09660 AT1G09660
fragaria_vesca	FvH4_5g28270 FvH4_5g28270 FvH4_5g28270 FvH4_5g28270
malus_domestica	MD08G1243900.v1.1 MD15G1438100.v1.1
prunus_persica	Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1 Prupe.1G581200_v2.0.a1
pyrus_communis	pycom08g21160 pycom15g38620
rosa_chinensis	RchiOBHm_Chr7g0220511
rosa_laevigata	RLG00000002220
rosa_multiflora	Rmu_co8386287.1_g000001 Rmu_ssc0000189.1_g000046
rosa_roxburghii	Rroxscaffold_3G00239340
rosa_rugosa	Rorug07G0194100 Rorug07G0194200
rosa_samantha	Rh7AG335200 Rh7BG326300 Rh7CG352900 Rh7DG331900
rosa_wichuraiana	Rw7G028580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	230, 529
AccI	GTMKAC	1 cut(s)	466
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	483, 870
AcoI	YGGCCR	2 cut(s)	488, 655
AcsI	RAATTY	4 cut(s)	34, 576, 660, 830
AcuI	CTGAAG	1 cut(s)	914
AcvI	CACGTG	2 cut(s)	674, 814
AfaI	GTAC	3 cut(s)	221, 722, 964
AfiI	CCNNNNNNNGG	7 cut(s)	83, 230, 529, 554, 664, 733, 1053
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	3 cut(s)	100, 391, 698
AjnI	CCWGG	4 cut(s)	202, 229, 490, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AlwI	GGATC	2 cut(s)	483, 870
Ama87I	CYCGRG	2 cut(s)	881, 1006
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	4 cut(s)	488, 531, 655, 730
ApoI	RAATTY	4 cut(s)	34, 576, 660, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspS9I	GGNCC	3 cut(s)	320, 532, 668
AsuC2I	CCSGG	1 cut(s)	734
AvaI	CYCGRG	2 cut(s)	881, 1006
AvaII	GGWCC	2 cut(s)	320, 668
BalI	TGGCCA	1 cut(s)	490
BanII	GRGCYC	3 cut(s)	740, 983, 995
BbrPI	CACGTG	2 cut(s)	674, 814
BbsI	GAAGAC	1 cut(s)	249
BccI	CCATC	2 cut(s)	480, 552
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	4 cut(s)	204, 231, 492, 783
BcnI	CCSGG	1 cut(s)	734
BfaI	CTAG	1 cut(s)	984
BfmI	CTRYAG	3 cut(s)	25, 267, 402
Bme1390I	CCNGG	5 cut(s)	204, 231, 492, 734, 783
Bme18I	GGWCC	2 cut(s)	320, 668
BmeT110I	CYCGRG	2 cut(s)	881, 1006
BmgT120I	GGNCC	3 cut(s)	320, 532, 668
BmiI	GGNNCC	3 cut(s)	321, 534, 669
BmrFI	CCNGG	5 cut(s)	204, 231, 492, 734, 783
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	184, 216
BpmI	CTGGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	734
BsaAI	YACGTR	2 cut(s)	674, 814
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	3 cut(s)	624, 727, 733
BsaWI	WCCGGW	1 cut(s)	835
Bsc4I	CCNNNNNNNGG	7 cut(s)	83, 230, 529, 554, 664, 733, 1053
Bse1I	ACTGG	2 cut(s)	217, 303
Bse8I	GATNNNNATC	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	4 cut(s)	204, 231, 492, 783
BseDI	CCNNGG	3 cut(s)	624, 727, 733
BseGI	GGATG	4 cut(s)	491, 563, 723, 1041
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	7 cut(s)	83, 230, 529, 554, 664, 733, 1053
BseMII	CTCAG	2 cut(s)	753, 959
BseNI	ACTGG	2 cut(s)	217, 303
BsgI	GTGCAG	1 cut(s)	1050
BshFI	GGCC	4 cut(s)	490, 533, 657, 732
BsiHKCI	CYCGRG	2 cut(s)	881, 1006
BsiSI	CCGG	2 cut(s)	733, 836
BslFI	GGGAC	3 cut(s)	333, 528, 681
BslI	CCNNNNNNNGG	7 cut(s)	83, 230, 529, 554, 664, 733, 1053
BsmFI	GGGAC	3 cut(s)	333, 528, 681
BsnI	GGCC	4 cut(s)	490, 533, 657, 732
BsoBI	CYCGRG	2 cut(s)	881, 1006
Bsp1286I	GDGCHC	3 cut(s)	740, 983, 995
Bsp13I	TCCGGA	1 cut(s)	835
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	4 cut(s)	490, 533, 657, 732
BspCNI	CTCAG	2 cut(s)	752, 960
BspEI	TCCGGA	1 cut(s)	835
BspHI	TCATGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	321, 534, 669
BspMAI	CTGCAG	2 cut(s)	271, 406
BspPI	GGATC	2 cut(s)	483, 870
BsrGI	TGTACA	1 cut(s)	720
BsrI	ACTGG	2 cut(s)	217, 303
BssECI	CCNNGG	3 cut(s)	624, 727, 733
BssMI	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
Bst2UI	CCWGG	4 cut(s)	204, 231, 492, 783
Bst4CI	ACNGT	4 cut(s)	170, 431, 962, 1028
Bst6I	CTCTTC	3 cut(s)	128, 756, 969
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	720
BstBAI	YACGTR	2 cut(s)	674, 814
BstC8I	GCNNGC	2 cut(s)	779, 856
BstDEI	CTNAG	4 cut(s)	739, 938, 968, 1001
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	4 cut(s)	491, 563, 723, 1041
BstKTI	GATC	7 cut(s)	274, 372, 409, 478, 619, 865, 919
BstMBI	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 568
BstNI	CCWGG	4 cut(s)	204, 231, 492, 783
BstNSI	RCATGY	1 cut(s)	1015
BstSCI	CCNGG	5 cut(s)	202, 229, 490, 732, 781
BstSFI	CTRYAG	3 cut(s)	25, 267, 402
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	490, 533, 657, 732
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	491, 563, 723, 1041
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	4 cut(s)	747, 876, 965, 1033
Cac8I	GCNNGC	2 cut(s)	779, 856
CciI	TCATGA	1 cut(s)	364
Cfr13I	GGNCC	3 cut(s)	320, 532, 668
Csp6I	GTAC	3 cut(s)	220, 721, 963
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	9 cut(s)	21, 239, 365, 425, 502, 703, 866, 988, 1012
CviQI	GTAC	3 cut(s)	220, 721, 963
DdeI	CTNAG	4 cut(s)	739, 938, 968, 1001
DpnI	GATC	7 cut(s)	273, 371, 408, 477, 618, 864, 918
DpnII	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
EaeI	YGGCCR	2 cut(s)	488, 655
Eam1104I	CTCTTC	3 cut(s)	128, 756, 969
EarI	CTCTTC	3 cut(s)	128, 756, 969
Eco24I	GRGCYC	3 cut(s)	740, 983, 995
Eco47I	GGWCC	2 cut(s)	320, 668
Eco57I	CTGAAG	1 cut(s)	914
Eco72I	CACGTG	2 cut(s)	674, 814
Eco88I	CYCGRG	2 cut(s)	881, 1006
EcoRI	GAATTC	1 cut(s)	576
EcoRII	CCWGG	4 cut(s)	202, 229, 490, 781
EcoT38I	GRGCYC	3 cut(s)	740, 983, 995
FaeI	CATG	9 cut(s)	24, 242, 368, 428, 505, 706, 869, 991, 1015
FaqI	GGGAC	3 cut(s)	333, 528, 681
FatI	CATG	9 cut(s)	20, 238, 364, 424, 501, 702, 865, 987, 1011
FauI	CCCGC	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	466
FokI	GGATG	4 cut(s)	498, 570, 710, 1048
FriOI	GRGCYC	3 cut(s)	740, 983, 995
FspBI	CTAG	1 cut(s)	984
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	4 cut(s)	490, 533, 657, 732
HapII	CCGG	2 cut(s)	733, 836
Hin1II	CATG	9 cut(s)	24, 242, 368, 428, 505, 706, 869, 991, 1015
HinfI	GANTC	4 cut(s)	100, 195, 749, 908
HpaII	CCGG	2 cut(s)	733, 836
Hpy166II	GTNNAC	6 cut(s)	51, 467, 628, 721, 904, 965
Hpy188I	TCNGA	3 cut(s)	374, 728, 894
Hpy188III	TCNNGA	8 cut(s)	275, 365, 410, 479, 523, 753, 836, 883
Hpy8I	GTNNAC	6 cut(s)	51, 467, 628, 721, 904, 965
HpyAV	CCTTC	5 cut(s)	141, 558, 739, 899, 922
HpyCH4III	ACNGT	4 cut(s)	170, 431, 962, 1028
HpyCH4IV	ACGT	2 cut(s)	673, 813
HpyCH4V	TGCA	6 cut(s)	269, 331, 404, 811, 869, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 568
HpyF3I	CTNAG	4 cut(s)	739, 938, 968, 1001
HpySE526I	ACGT	2 cut(s)	673, 813
Hsp92II	CATG	9 cut(s)	24, 242, 368, 428, 505, 706, 869, 991, 1015
Kpn2I	TCCGGA	1 cut(s)	835
Kzo9I	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
MaeI	CTAG	1 cut(s)	984
MaeII	ACGT	2 cut(s)	673, 813
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	7 cut(s)	273, 371, 408, 477, 618, 864, 918
MboI	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
MboII	GAAGA	5 cut(s)	115, 249, 611, 773, 986
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	3 cut(s)	740, 983, 995
MlsI	TGGCCA	1 cut(s)	490
MluCI	AATT	7 cut(s)	34, 576, 646, 660, 767, 830, 944
MluNI	TGGCCA	1 cut(s)	490
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	1 cut(s)	605
Mox20I	TGGCCA	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	835
MscI	TGGCCA	1 cut(s)	490
MseI	TTAA	6 cut(s)	5, 446, 686, 770, 798, 1023
MslI	CAYNNNNRTG	1 cut(s)	798
Msp20I	TGGCCA	1 cut(s)	490
MspI	CCGG	2 cut(s)	733, 836
MspR9I	CCNGG	5 cut(s)	204, 231, 492, 734, 783
MvaI	CCWGG	4 cut(s)	204, 231, 492, 783
MwoI	GCNNNNNNNGC	2 cut(s)	337, 568
NciI	CCSGG	1 cut(s)	734
NdeII	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
NlaIII	CATG	9 cut(s)	24, 242, 368, 428, 505, 706, 869, 991, 1015
NlaIV	GGNNCC	3 cut(s)	321, 534, 669
NspI	RCATGY	1 cut(s)	1015
PaeR7I	CTCGAG	1 cut(s)	881
PagI	TCATGA	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	100, 195, 749
PflMI	CCANNNNNTGG	2 cut(s)	230, 529
PfoI	TCCNGGA	1 cut(s)	202
PleI	GAGTC	1 cut(s)	916
PmaCI	CACGTG	2 cut(s)	674, 814
PmlI	CACGTG	2 cut(s)	674, 814
PpsI	GAGTC	1 cut(s)	916
Ppu21I	YACGTR	2 cut(s)	674, 814
Psp6I	CCWGG	4 cut(s)	202, 229, 490, 781
PspCI	CACGTG	2 cut(s)	674, 814
PspGI	CCWGG	4 cut(s)	202, 229, 490, 781
PspN4I	GGNNCC	3 cut(s)	321, 534, 669
PspPI	GGNCC	3 cut(s)	320, 532, 668
PstI	CTGCAG	2 cut(s)	271, 406
PsuI	RGATCY	1 cut(s)	475
RsaI	GTAC	3 cut(s)	221, 722, 964
RsaNI	GTAC	3 cut(s)	220, 721, 963
RseI	CAYNNNNRTG	1 cut(s)	798
SaqAI	TTAA	6 cut(s)	5, 446, 686, 770, 798, 1023
Sau3AI	GATC	7 cut(s)	271, 369, 406, 475, 616, 862, 916
Sau96I	GGNCC	3 cut(s)	320, 532, 668
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	5 cut(s)	204, 231, 492, 734, 783
SduI	GDGCHC	3 cut(s)	740, 983, 995
SetI	ASST	7 cut(s)	119, 229, 257, 443, 676, 816, 891
SfcI	CTRYAG	3 cut(s)	25, 267, 402
Sfr274I	CTCGAG	1 cut(s)	881
SinI	GGWCC	2 cut(s)	320, 668
SlaI	CTCGAG	1 cut(s)	881
SmiMI	CAYNNNNRTG	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	7 cut(s)	34, 576, 646, 660, 767, 830, 944
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	1 cut(s)	984
StyD4I	CCNGG	5 cut(s)	202, 229, 490, 732, 781
TaaI	ACNGT	4 cut(s)	170, 431, 962, 1028
TaiI	ACGT	2 cut(s)	676, 816
TaqI	TCGA	3 cut(s)	274, 882, 915
TasI	AATT	7 cut(s)	34, 576, 646, 660, 767, 830, 944
TatI	WGTACW	1 cut(s)	720
TfiI	GAWTC	3 cut(s)	100, 195, 749
Tru1I	TTAA	6 cut(s)	5, 446, 686, 770, 798, 1023
Tru9I	TTAA	6 cut(s)	5, 446, 686, 770, 798, 1023
TscAI	CASTG	4 cut(s)	747, 876, 972, 1033
TspDTI	ATGAA	2 cut(s)	804, 1052
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	4 cut(s)	747, 876, 972, 1033
Van91I	CCANNNNNTGG	2 cut(s)	230, 529
VpaK11BI	GGWCC	2 cut(s)	320, 668
XapI	RAATTY	4 cut(s)	34, 576, 660, 830
XceI	RCATGY	1 cut(s)	1015
XhoI	CTCGAG	1 cut(s)	881
XmiI	GTMKAC	1 cut(s)	466
XspI	CTAG	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.