Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

3596264 .. 3597847

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAAAAGCACTCAAAGGAGAACGCTCTCGCTCTTCAGCAGGAGACTCTCGACCTTGAGAACCCTGAATCCTCTCCTCGTTCCTCCGGCCGGAGCTGTTCCTCTGCTTTCTCGCGTCTGGTTGGTCTCCGATGTCTCATCGTTTTGGTCCTAAGCTGTGCGATTCTTCTCTCTGCGATCTTCTGGCTATTCCCTCGTCGATCGGTGTCTGAATTCAAAGCTGATGGGACAGTTAAACTCAATGCTTCAGTACAAGCATCCTTTAGACTTCAAAAACCAGTTTCTGAAGTTGTTCGCCATAAAGGAAAGATAGAGCATGATATCCTTCGGAGCATAGGTCTTTCGAACAACAGCAAGGTGACTGTTCTGTCTCTGAATCAATCAGGTGCATCTAACTACACAGACGTGGAGTTTGCAGTTCTTCCTGTCCCTCCTGACCATGAAATAAGCAAACACTCGTTAAGCTTACTGCGATCGTCTTTTGTTAAGCTGTTTGCTAAAAGATCGAAGCTGAAACTCACCACATCAGGTTTCGGGAAGCCAACTTCTTTTCAGGTTTTGAAATTTCCTGGAGGAATAACTGTAGATCCACTGGAACCTGCACCTGTCTCTGGAGTAGCACTGGTTCTGTTTAGTGTTACTATCAAAACTTCGATATCAACAGTACAAGATAGGCTGGATCTGCTAAATGGTCTATTTGAGCATATGTTGTCTTTGGAGCCATATGAGAGTGTTCATTTCCAACTCACAAATAAACAAGGATCTACCATATCACCACCGCTAACTTTTCAGGTTTATGTTGCTTTCACCATGAGAAAATATCTTCATCAGAGATTGAACCATTTTACTCAGATCATTCAAACATCCCGTGCTAAAAATCTCGGTCTAGACGAGGCAGTTTTTGGTGAAGTCAAGGATATAACTTTCTCAACATACCTGGATGGCAAAGTTCCTGATTCTGATTTGGAATTGGCACCAGCGCCAACTCCTTGCTTATCTTCTCTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

336

Amino Acids

36.97

Weight (kDa)

9.22

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	87 - 179	1.2e-24	Domain of unknown function (DUF7036)
DUF7036	PF23041	212 - 302	4.1e-13	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	973
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	779
AclWI	GGATC	3 cut(s)	581, 687, 769
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	212, 563
AcuI	CTGAAG	3 cut(s)	20, 231, 306
AfaI	GTAC	2 cut(s)	252, 666
AfiI	CCNNNNNNNGG	2 cut(s)	90, 611
AgsI	TTSAA	5 cut(s)	217, 272, 562, 838, 860
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	568, 936
AleI	CACNNNNGTG	1 cut(s)	404
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	6 cut(s)	96, 156, 221, 465, 490, 511
AluI	AGCT	6 cut(s)	96, 156, 221, 465, 490, 511
Alw26I	GTCTC	5 cut(s)	38, 131, 140, 375, 613
AlwI	GGATC	3 cut(s)	581, 687, 769
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	212, 563
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	982
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	5 cut(s)	370, 511, 765, 799, 917
AsuII	TTCGAA	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	973
BccI	CCATC	2 cut(s)	218, 935
BciT130I	CCWGG	2 cut(s)	570, 938
BcoDI	GTCTC	5 cut(s)	38, 131, 140, 375, 613
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	983
BfuAI	ACCTGC	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	570, 938
Bme18I	GGWCC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	597, 720, 975
BmrFI	CCNGG	2 cut(s)	570, 938
BmsI	GCATC	2 cut(s)	266, 398
BpmI	CTGGAG	2 cut(s)	591, 633
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 611
Bse1I	ACTGG	3 cut(s)	278, 597, 627
BseBI	CCWGG	2 cut(s)	570, 938
BseGI	GGATG	3 cut(s)	257, 863, 946
BseLI	CCNNNNNNNGG	2 cut(s)	90, 611
BseMII	CTCAG	1 cut(s)	863
BseNI	ACTGG	3 cut(s)	278, 597, 627
BseRI	GAGGAG	1 cut(s)	66
BseX3I	CGGCCG	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	1 cut(s)	115
Bsh1285I	CGRYCG	3 cut(s)	91, 203, 476
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	973
BsiEI	CGRYCG	3 cut(s)	91, 203, 476
BsiSI	CCGG	2 cut(s)	87, 91
BslFI	GGGAC	2 cut(s)	241, 413
BslI	CCNNNNNNNGG	2 cut(s)	90, 611
BsmAI	GTCTC	5 cut(s)	38, 131, 140, 375, 613
BsmFI	GGGAC	2 cut(s)	241, 413
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	131
Bsp119I	TTCGAA	1 cut(s)	344
Bsp143I	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
BspACI	CCGC	1 cut(s)	779
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	862
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	3 cut(s)	597, 720, 975
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	3 cut(s)	581, 687, 769
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	973
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	278, 597, 627
BssMI	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
Bst2UI	CCWGG	2 cut(s)	570, 938
Bst4CI	ACNGT	4 cut(s)	232, 364, 583, 664
Bst6I	CTCTTC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	344
BstDEI	CTNAG	2 cut(s)	152, 849
BstF5I	GGATG	3 cut(s)	257, 863, 946
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	1 cut(s)	982
BstKTI	GATC	8 cut(s)	180, 203, 476, 506, 589, 682, 764, 855
BstMAI	GTCTC	5 cut(s)	38, 131, 140, 375, 613
BstMBI	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
BstMCI	CGRYCG	3 cut(s)	91, 203, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	682
BstNI	CCWGG	2 cut(s)	570, 938
BstSCI	CCNGG	2 cut(s)	568, 936
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	115
BstX2I	RGATCY	3 cut(s)	586, 679, 761
BstYI	RGATCY	3 cut(s)	586, 679, 761
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	257, 863, 946
BtsIMutI	CAGTG	2 cut(s)	590, 620
BveI	ACCTGC	1 cut(s)	607
CaiI	CAGNNNCTG	1 cut(s)	284
CfoI	GCGC	1 cut(s)	982
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	251, 665
CviAII	CATG	3 cut(s)	317, 440, 811
CviQI	GTAC	2 cut(s)	251, 665
DdeI	CTNAG	2 cut(s)	152, 849
DpnI	GATC	8 cut(s)	179, 202, 475, 505, 588, 681, 763, 854
DpnII	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	2 cut(s)	322, 657
Eco47I	GGWCC	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	20, 231, 306
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	2 cut(s)	568, 936
EcoRV	GATATC	2 cut(s)	322, 657
FaeI	CATG	3 cut(s)	320, 443, 814
FaqI	GGGAC	2 cut(s)	241, 413
FatI	CATG	3 cut(s)	316, 439, 810
FauNDI	CATATG	2 cut(s)	705, 724
FokI	GGATG	3 cut(s)	244, 850, 953
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	1 cut(s)	981
GsuI	CTGGAG	2 cut(s)	591, 633
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	2 cut(s)	87, 91
HgaI	GACGC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	982
Hin1II	CATG	3 cut(s)	320, 443, 814
Hin6I	GCGC	1 cut(s)	980
HinP1I	GCGC	1 cut(s)	980
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	5 cut(s)	46, 68, 163, 376, 956
HpaII	CCGG	2 cut(s)	87, 91
HphI	GGTGA	5 cut(s)	370, 511, 765, 799, 917
Hpy188I	TCNGA	8 cut(s)	131, 211, 286, 330, 375, 831, 852, 961
Hpy188III	TCNNGA	6 cut(s)	50, 434, 535, 612, 887, 953
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	232, 364, 583, 664
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	389, 416, 602
HpyF10VI	GCNNNNNNNGC	1 cut(s)	682
HpyF3I	CTNAG	2 cut(s)	152, 849
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	320, 443, 814
HspAI	GCGC	1 cut(s)	980
Kzo9I	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	93, 330, 718
LweI	GCATC	2 cut(s)	266, 398
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	2 cut(s)	358, 637
MalI	GATC	8 cut(s)	179, 202, 475, 505, 588, 681, 763, 854
MboI	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
MboII	GAAGA	6 cut(s)	26, 158, 172, 413, 815, 990
MflI	RGATCY	3 cut(s)	586, 679, 761
MluCI	AATT	3 cut(s)	212, 563, 968
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	8 cut(s)	82, 87, 94, 112, 204, 441, 566, 886
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	3 cut(s)	234, 461, 486
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	2 cut(s)	87, 91
MspR9I	CCNGG	2 cut(s)	570, 938
MvaI	CCWGG	2 cut(s)	570, 938
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	682
NdeI	CATATG	2 cut(s)	705, 724
NdeII	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
NlaIII	CATG	3 cut(s)	320, 443, 814
NlaIV	GGNNCC	3 cut(s)	597, 720, 975
NmuCI	GTSAC	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	344
OliI	CACNNNNGTG	1 cut(s)	404
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	68, 163, 376, 956
PfoI	TCCNGGA	1 cut(s)	568
Ple19I	CGATCG	2 cut(s)	203, 476
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	2 cut(s)	568, 936
PspGI	CCWGG	2 cut(s)	568, 936
PspN4I	GGNNCC	3 cut(s)	597, 720, 975
PspPI	GGNCC	1 cut(s)	148
PsrI	GAACNNNNNNTAC	2 cut(s)	609, 641
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	3 cut(s)	586, 679, 761
PvuI	CGATCG	2 cut(s)	203, 476
RsaI	GTAC	2 cut(s)	252, 666
RsaNI	GTAC	2 cut(s)	251, 665
RseI	CAYNNNNRTG	1 cut(s)	404
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	234, 461, 486
Sau3AI	GATC	8 cut(s)	177, 200, 473, 503, 586, 679, 761, 852
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	570, 938
SfaNI	GCATC	2 cut(s)	266, 398
SfcI	CTRYAG	1 cut(s)	582
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	3 cut(s)	212, 563, 968
SsiI	CCGC	1 cut(s)	779
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	568, 936
TaaI	ACNGT	4 cut(s)	232, 364, 583, 664
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	5 cut(s)	51, 199, 344, 506, 653
TaqII	GACCGA	1 cut(s)	872
TasI	AATT	3 cut(s)	212, 563, 968
TatI	WGTACW	2 cut(s)	250, 664
TfiI	GAWTC	4 cut(s)	68, 163, 376, 956
Tru1I	TTAA	3 cut(s)	234, 461, 486
Tru9I	TTAA	3 cut(s)	234, 461, 486
TscAI	CASTG	2 cut(s)	597, 627
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	4 cut(s)	17, 456, 725, 815
TspRI	CASTG	2 cut(s)	597, 627
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	212, 563
XbaI	TCTAGA	1 cut(s)	886
XmnI	GAANNNNTTC	1 cut(s)	291
XspI	CTAG	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.