Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

20496113 .. 20501644

Gene Structure 5532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGAAAGGTGAGAAAAGCCTGCACCAGCAGCACCACCAGGATCAGAGTCACCAAACCCACGATGCTTCTGGCTTCATCTGTCCCGAATGTTCCAGATTCTTCAACAGAATCGCCCAGGAGTTCAGCTTCCGATGCGTCTTCGTTTTAATTCTCGGCTTCTCGGTTTTCCTCTCCGGGATCTTCTGGATCCTTCCTCGCCATCCCGTCAATTCCGGGTTCGATGCCAAAGAATCGATTAAGCTCGCTGCGACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATTGCACAATTAGAATACGATATCAATGGGGAAATAGGTGTCCCAGATACAAAGGTGGCTGTTTTGTCCATGCACCAAAATGGTGCATCTAACTGGACTGATGTGGTGTTTGGTGTTCTTTCCGATCCGGTGAATGTTCCGATACTTCCAGTGTCCATAAGTGTGCTGAGAGCTTCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACAGTGACGGCATCAACGTTTGGACAACCATATATGTTTGAGATTCTAAAGTGTCCTGGGGGAATCACTGTGATTCCTGGGCAAGGTGCTTTGATCTGGCAAATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAGATAGTGGAAAATTTTGGTGAACTAAAGGAGCAGTTGACGTTTGGGTTGCATCTGAGGTCTTACGAGGATGTCATTTTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCACTTATGTCTGCTTTTGGGGGACTTCTGCCACAGCGATTGAAACAGTTGGCTCAGATAATTACAGGCTCTCCTGCAAGAAATCTTGGTCTCGATAACTCTGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTTTTTGAAGGGTACGCTCTCTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCGGACCTAAGTGATAATGCCGGACCATCAATCTCTCCAAATCCTGCTCCAACCGTTTACTCTGCAGCACCTTCACCCTCCAAGACTGGACATCCACCTCGGCCATGTTTATACCATGGTCCTAAAGTTTCTCCAAGCTCCTCGCCAACTCCTCATTCTAACCCTAATGTCCCCCCTACTTATGCACCTAGCAGTTCCCCTTATTCCCCTTCTTTGAGTCCCTCATCTCAAGTGTCCCCACATGTATCACCTGCACCTGTAATGTCCTATACTTCTAGTCCAGGCTACAAGAAAAGTGAAAAAGGCTTGTGGTCTCCATCACCCGCCCCAACCCCATCATCTTTCGCAGTAGGAACTTTCTACAAAGAGATCCGATTATTGGGATTTTGTGGACAACTCATCTTTCTTCTCCTTTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

50.71

Weight (kDa)

8.07

Isoelectric Point (pI)

60.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	89 - 180	1.2e-28	Domain of unknown function (DUF7036)
DUF7036	PF23041	213 - 303	1.5e-21	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1249
Acc36I	ACCTGC	1 cut(s)	1249
AciI	CCGC	2 cut(s)	623, 1314
AclI	AACGTT	1 cut(s)	533
AclWI	GGATC	6 cut(s)	51, 184, 188, 197, 425, 1354
AcoI	YGGCCR	1 cut(s)	1091
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	949
AfiI	CCNNNNNNNGG	2 cut(s)	599, 1369
AflII	CTTAAG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	1231
AgsI	TTSAA	7 cut(s)	106, 657, 768, 788, 794, 841, 943
AjnI	CCWGG	5 cut(s)	39, 117, 571, 592, 1270
AjuI	GAANNNNNNNTTGG	2 cut(s)	1129, 1161
AluBI	AGCT	8 cut(s)	129, 244, 295, 479, 493, 797, 983, 1128
AluI	AGCT	8 cut(s)	129, 244, 295, 479, 493, 797, 983, 1128
Alw26I	GTCTC	2 cut(s)	893, 1308
AlwI	GGATC	6 cut(s)	51, 184, 188, 197, 425, 1354
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	1 cut(s)	1091
ApeKI	GCWGC	3 cut(s)	31, 248, 1055
ApoI	RAATTY	1 cut(s)	676
AspS9I	GGNCC	3 cut(s)	994, 1013, 1109
AsuC2I	CCSGG	2 cut(s)	178, 217
AsuHPI	GGTGA	8 cut(s)	23, 44, 448, 695, 981, 1056, 1230, 1302
AvaII	GGWCC	3 cut(s)	994, 1013, 1109
BaeI	ACNNNNGTAYC	2 cut(s)	345, 378
BamHI	GGATCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	43, 235, 1067
BccI	CCATC	5 cut(s)	210, 994, 1024, 1315, 1333
BceAI	ACGGC	1 cut(s)	540
BciT130I	CCWGG	5 cut(s)	41, 119, 573, 594, 1272
BcnI	CCSGG	2 cut(s)	178, 217
BcoDI	GTCTC	2 cut(s)	893, 1308
BfaI	CTAG	2 cut(s)	1179, 1266
BfmI	CTRYAG	2 cut(s)	771, 1053
BfrI	CTTAAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	1249
BisI	GCNGC	3 cut(s)	32, 249, 1056
BlsI	GCNGC	3 cut(s)	33, 250, 1057
Bme1390I	CCNGG	7 cut(s)	41, 119, 178, 217, 573, 594, 1272
Bme18I	GGWCC	3 cut(s)	994, 1013, 1109
BmgT120I	GGNCC	3 cut(s)	994, 1013, 1109
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	7 cut(s)	41, 119, 178, 217, 573, 594, 1272
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	6 cut(s)	55, 125, 214, 401, 536, 724
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	1203
BpuMI	CCSGG	2 cut(s)	178, 217
Bsa29I	ATCGAT	1 cut(s)	236
BsaI	GGTCTC	2 cut(s)	893, 1308
BsaJI	CCNNGG	5 cut(s)	117, 572, 593, 1088, 1105
BsaWI	WCCGGW	2 cut(s)	433, 991
BsaXI	ACNNNNNCTCC	4 cut(s)	853, 883, 961, 991
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 1369
Bse1I	ACTGG	6 cut(s)	279, 284, 404, 455, 782, 1081
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	5 cut(s)	41, 119, 573, 594, 1272
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	5 cut(s)	117, 572, 593, 1088, 1105
BseGI	GGATG	3 cut(s)	202, 739, 1081
BseLI	CCNNNNNNNGG	2 cut(s)	599, 1369
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	4 cut(s)	464, 654, 710, 866
BseNI	ACTGG	6 cut(s)	279, 284, 404, 455, 782, 1081
BseRI	GAGGAG	2 cut(s)	1120, 1131
BseXI	GCAGC	3 cut(s)	43, 235, 1067
BsgI	GTGCAG	2 cut(s)	8, 1227
BshFI	GGCC	1 cut(s)	1093
BshVI	ATCGAT	1 cut(s)	236
BsiSI	CCGG	5 cut(s)	177, 216, 434, 992, 1011
BslFI	GGGAC	6 cut(s)	69, 332, 834, 1145, 1194, 1210
BslI	CCNNNNNNNGG	2 cut(s)	599, 1369
BsmAI	GTCTC	2 cut(s)	893, 1308
BsmFI	GGGAC	6 cut(s)	69, 332, 834, 1145, 1194, 1210
BsnI	GGCC	1 cut(s)	1093
Bso31I	GGTCTC	2 cut(s)	893, 1308
Bsp143I	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
Bsp19I	CCATGG	1 cut(s)	1105
BspACI	CCGC	2 cut(s)	623, 1314
BspANI	GGCC	1 cut(s)	1093
BspCNI	CTCAG	4 cut(s)	465, 655, 711, 865
BspDI	ATCGAT	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	1057
BspMI	ACCTGC	1 cut(s)	1249
BspPI	GGATC	6 cut(s)	51, 184, 188, 197, 425, 1354
BspTI	CTTAAG	1 cut(s)	500
BspTNI	GGTCTC	2 cut(s)	893, 1308
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	6 cut(s)	279, 284, 404, 455, 782, 1081
BssECI	CCNNGG	5 cut(s)	117, 572, 593, 1088, 1105
BssMI	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
BssT1I	CCWWGG	1 cut(s)	1105
Bst2UI	CCWGG	5 cut(s)	41, 119, 573, 594, 1272
Bst4CI	ACNGT	5 cut(s)	256, 520, 586, 846, 1045
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	23, 246
BstDEI	CTNAG	5 cut(s)	473, 663, 719, 852, 998
BstDSI	CCRYGG	1 cut(s)	1105
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstF5I	GGATG	3 cut(s)	202, 739, 1081
BstKTI	GATC	6 cut(s)	46, 183, 192, 433, 612, 1362
BstMAI	GTCTC	2 cut(s)	893, 1308
BstMBI	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 135, 622
BstNI	CCWGG	5 cut(s)	41, 119, 573, 594, 1272
BstNSI	RCATGY	1 cut(s)	1235
BstSCI	CCNGG	7 cut(s)	39, 117, 176, 215, 571, 592, 1270
BstSFI	CTRYAG	2 cut(s)	771, 1053
BstV1I	GCAGC	3 cut(s)	43, 235, 1067
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	3 cut(s)	180, 189, 1359
BstYI	RGATCY	3 cut(s)	180, 189, 1359
Bsu15I	ATCGAT	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	1093
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	1105
BtsCI	GGATG	3 cut(s)	202, 739, 1081
BtsIMutI	CAGTG	3 cut(s)	462, 525, 582
BveI	ACCTGC	1 cut(s)	1249
Cac8I	GCNNGC	2 cut(s)	23, 246
CaiI	CAGNNNCTG	1 cut(s)	631
Cfr13I	GGNCC	3 cut(s)	994, 1013, 1109
ClaI	ATCGAT	1 cut(s)	236
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	948
CspCI	CAANNNNNGTGG	2 cut(s)	819, 854
CviAII	CATG	4 cut(s)	376, 1095, 1106, 1232
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	5 cut(s)	473, 663, 719, 852, 998
DpnI	GATC	6 cut(s)	45, 182, 191, 432, 611, 1361
DpnII	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
EaeI	YGGCCR	1 cut(s)	1091
Eco130I	CCWWGG	1 cut(s)	1105
Eco31I	GGTCTC	2 cut(s)	893, 1308
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	3 cut(s)	994, 1013, 1109
Eco57I	CTGAAG	1 cut(s)	253
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoRII	CCWGG	5 cut(s)	39, 117, 571, 592, 1270
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	1105
ErhI	CCWWGG	1 cut(s)	1105
FaeI	CATG	4 cut(s)	379, 1098, 1109, 1235
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	6 cut(s)	69, 332, 834, 1145, 1194, 1210
FatI	CATG	4 cut(s)	375, 1094, 1105, 1231
FauI	CCCGC	1 cut(s)	1321
Fnu4HI	GCNGC	3 cut(s)	32, 249, 1056
FokI	GGATG	3 cut(s)	189, 746, 1068
Fsp4HI	GCNGC	3 cut(s)	32, 249, 1056
FspBI	CTAG	2 cut(s)	1179, 1266
GluI	GCNGC	3 cut(s)	32, 249, 1056
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	1 cut(s)	1093
HapII	CCGG	5 cut(s)	177, 216, 434, 992, 1011
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	4 cut(s)	379, 1098, 1109, 1235
HincII	GTYRAC	1 cut(s)	702
HindII	GTYRAC	1 cut(s)	702
HindIII	AAGCTT	1 cut(s)	795
HpaII	CCGG	5 cut(s)	177, 216, 434, 992, 1011
HphI	GGTGA	8 cut(s)	23, 44, 448, 695, 981, 1056, 1230, 1302
Hpy166II	GTNNAC	4 cut(s)	686, 702, 1048, 1382
Hpy188I	TCNGA	9 cut(s)	48, 134, 272, 430, 447, 720, 855, 926, 1364
Hpy188III	TCNNGA	5 cut(s)	86, 96, 187, 290, 890
Hpy8I	GTNNAC	4 cut(s)	686, 702, 1048, 1382
HpyAV	CCTTC	5 cut(s)	203, 937, 984, 1071, 1209
HpyCH4III	ACNGT	5 cut(s)	256, 520, 586, 846, 1045
HpyCH4IV	ACGT	2 cut(s)	533, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 135, 622
HpyF3I	CTNAG	5 cut(s)	473, 663, 719, 852, 998
HpySE526I	ACGT	2 cut(s)	533, 704
Hsp92II	CATG	4 cut(s)	379, 1098, 1109, 1235
Kzo9I	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
LmnI	GCTCC	4 cut(s)	694, 988, 1042, 1133
Lsp1109I	GCAGC	3 cut(s)	43, 235, 1067
LweI	GCATC	6 cut(s)	55, 125, 214, 401, 536, 724
MaeI	CTAG	2 cut(s)	1179, 1266
MaeII	ACGT	2 cut(s)	533, 704
MaeIII	GTNAC	3 cut(s)	50, 520, 748
MalI	GATC	6 cut(s)	45, 182, 191, 432, 611, 1361
MboI	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
MboII	GAAGA	4 cut(s)	94, 133, 175, 1388
MflI	RGATCY	3 cut(s)	180, 189, 1359
MluCI	AATT	6 cut(s)	150, 211, 314, 652, 676, 858
MlyI	GAGTC	2 cut(s)	58, 1216
MmeI	TCCRAC	2 cut(s)	992, 1064
MseI	TTAA	4 cut(s)	149, 240, 501, 636
MslI	CAYNNNNRTG	2 cut(s)	384, 467
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	5 cut(s)	177, 216, 434, 992, 1011
MspR9I	CCNGG	7 cut(s)	41, 119, 178, 217, 573, 594, 1272
MvaI	CCWGG	5 cut(s)	41, 119, 573, 594, 1272
MwoI	GCNNNNNNNGC	3 cut(s)	31, 135, 622
NciI	CCSGG	2 cut(s)	178, 217
NcoI	CCATGG	1 cut(s)	1105
NdeII	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
NlaIII	CATG	4 cut(s)	379, 1098, 1109, 1235
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	2 cut(s)	135, 1069
NmuCI	GTSAC	2 cut(s)	50, 520
NspI	RCATGY	1 cut(s)	1235
PaqCI	CACCTGC	1 cut(s)	1249
PciI	ACATGT	1 cut(s)	1231
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	8 cut(s)	99, 111, 233, 559, 579, 589, 628, 776
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	33, 250, 1057
PleI	GAGTC	2 cut(s)	57, 1215
PpsI	GAGTC	2 cut(s)	57, 1215
PscI	ACATGT	1 cut(s)	1231
Psp1406I	AACGTT	1 cut(s)	533
Psp6I	CCWGG	5 cut(s)	39, 117, 571, 592, 1270
PspGI	CCWGG	5 cut(s)	39, 117, 571, 592, 1270
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	994, 1013, 1109
PstI	CTGCAG	1 cut(s)	1057
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	3 cut(s)	180, 189, 1359
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
RseI	CAYNNNNRTG	2 cut(s)	384, 467
SaqAI	TTAA	4 cut(s)	149, 240, 501, 636
SatI	GCNGC	3 cut(s)	32, 249, 1056
Sau3AI	GATC	6 cut(s)	43, 180, 189, 430, 609, 1359
Sau96I	GGNCC	3 cut(s)	994, 1013, 1109
SchI	GAGTC	2 cut(s)	58, 1216
ScrFI	CCNGG	7 cut(s)	41, 119, 178, 217, 573, 594, 1272
SfaNI	GCATC	6 cut(s)	55, 125, 214, 401, 536, 724
SfcI	CTRYAG	2 cut(s)	771, 1053
SinI	GGWCC	3 cut(s)	994, 1013, 1109
SmiMI	CAYNNNNRTG	2 cut(s)	384, 467
SmlI	CTYRAG	2 cut(s)	500, 1218
SmoI	CTYRAG	2 cut(s)	500, 1218
Sse9I	AATT	6 cut(s)	150, 211, 314, 652, 676, 858
SsiI	CCGC	2 cut(s)	623, 1314
SspMI	CTAG	2 cut(s)	1179, 1266
StyD4I	CCNGG	7 cut(s)	39, 117, 176, 215, 571, 592, 1270
StyI	CCWWGG	1 cut(s)	1105
TaaI	ACNGT	5 cut(s)	256, 520, 586, 846, 1045
TaiI	ACGT	2 cut(s)	536, 707
TaqI	TCGA	4 cut(s)	222, 236, 289, 891
TasI	AATT	6 cut(s)	150, 211, 314, 652, 676, 858
TfiI	GAWTC	8 cut(s)	99, 111, 233, 559, 579, 589, 628, 776
Tru1I	TTAA	4 cut(s)	149, 240, 501, 636
Tru9I	TTAA	4 cut(s)	149, 240, 501, 636
TscAI	CASTG	3 cut(s)	462, 525, 589
TseFI	GTSAC	2 cut(s)	50, 520
TseI	GCWGC	3 cut(s)	31, 248, 1055
Tsp45I	GTSAC	2 cut(s)	50, 520
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	3 cut(s)	462, 525, 589
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	3 cut(s)	994, 1013, 1109
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	1 cut(s)	1235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XspI	CTAG	2 cut(s)	1179, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.