Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Reverse (-)

46315054 .. 46322465

Gene Structure 7412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G567800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGGGAAGGGTGAGCAAAATCTGCATCAGCAGCAGAGTCATGGGGGTGAAAATTCTTCGGAACTCATCTGTCCTGGATGTTCGATGGTTTTTAATAGAATCGCCGAAGACTTCAGCTTTAGATGCGTTTTTGTGTTAATTCTCAGCTTATCAATTTTTCTCTCTGGGATCTTCTGGATCCTTCCTTACCGTTCAACCAAGTCTGGGTTTGATGCCAAAGAGGCAATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTATGGACCTTGTTCCACACATCAGAAGATTAGAATATGATATCAATGGGGAAATAGGTGTCCCAGGGACAAAGGTGGCTATTTTGTCCATGCACCAAAATGATGCATATAACTGGACTGATGTGGTTTTTGGGGTTCTTTCCGATCCAATAAATGCTCCAATGATTCCAGTGTCCTTAAGTGTACTGAGGTCATCTTTCGTTGAGCTGTTCCTTAAGCAAACCAATCTTACGGTGACAACATCAATTTTTGGGCAGCCATCTATGTTTGAGATTCTGAAGTATCCGGCGGGAATCACTGTGATTCCTGGGCAATCTGCTTCGATCTGGCAGATACCCCAGATCCTGTTTAATTTTACTCTCAATAATTCTACATCAGACATAGTGGAAAACTTTGTTCAGTTAAAGGAGCAGTTGAGGTTTGGATTGCATCTAAGGTCTTATGAGAATGTATTTTTGCAAATTACAAACAAATTGGGTTCAACTACAGATGCCCCAGTTGTAGTTCAAGCGTCTCTCATGTCTGAGTTTGGGGGCATTGTGCCACAGAGATTGAAGCAGTTGGCTCAAACAATCACTGGTTCTCCAGCAAAAAATCTTGGCCTTGATAACTCAGTCTTTGGTAAAGTTAAAAGTATCAGTTTATCTTCTTATCTTAAAGGTACACTTACTGCAACCTCCCCTACTCCTTCTCCCGCTCCATCTCCAGAGCCAACAATTTCTCCATATCCTGCTTCTCCAGTTCACTCTCCAGCACCCTCACCTGACAGTAATCATCTCCCACCAGCACCATCCAAGGTAGCCCCACATCCTCGTCCATGTCCATACCACGGTTCTGGAATTCCTCCAAGCTCCTCACCAACTTCTCATCCTAACCCTACTGTTCCTCCTACTTATGCACCTAATGGTTCCCCTTACTCGCCTTCTATGAGTCCCTCATCTCAATTGTCTCCCCATGTGTCACCTGCACCTGTAGTGTCCAATGCTCCAAGTCCAGGAAACAAGGGAAGTGCACAAGACTTAATTTCTCCATCACCTTCCCCATCCTTGTCATCTTCAGCAGTAGGACCTTTCTACAAGGAGATCCGTTTCTTGGAATTTTCAGGACTCTTGATCTTTTATCTCCTCTGTTGGTTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

50.87

Weight (kDa)

8.19

Isoelectric Point (pI)

66.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1246
Acc36I	ACCTGC	1 cut(s)	1246
AccBSI	CCGCTC	1 cut(s)	971
AciI	CCGC	2 cut(s)	563, 969
AclWI	GGATC	6 cut(s)	172, 176, 185, 413, 610, 1351
AcsI	RAATTY	3 cut(s)	52, 1113, 1370
AcuI	CTGAAG	4 cut(s)	97, 241, 572, 1314
AfaI	GTAC	2 cut(s)	459, 937
AfiI	CCNNNNNNNGG	4 cut(s)	204, 1103, 1268, 1366
AflII	CTTAAG	2 cut(s)	451, 488
AgsI	TTSAA	4 cut(s)	195, 756, 782, 829
AjnI	CCWGG	4 cut(s)	73, 337, 580, 1267
AluBI	AGCT	5 cut(s)	117, 147, 232, 481, 1125
AluI	AGCT	5 cut(s)	117, 147, 232, 481, 1125
Alw21I	GWGCWC	1 cut(s)	1288
Alw26I	GTCTC	2 cut(s)	792, 1227
Alw44I	GTGCAC	1 cut(s)	1284
AlwI	GGATC	6 cut(s)	172, 176, 185, 413, 610, 1351
AlwNI	CAGNNNCTG	1 cut(s)	619
AoxI	GGCC	1 cut(s)	874
ApaLI	GTGCAC	1 cut(s)	1284
ApeKI	GCWGC	2 cut(s)	31, 529
ApoI	RAATTY	3 cut(s)	52, 1113, 1370
AspS9I	GGNCC	2 cut(s)	280, 1340
AsuHPI	GGTGA	7 cut(s)	23, 59, 520, 1026, 1122, 1227, 1299
AvaII	GGWCC	2 cut(s)	280, 1340
BaeGI	GKGCMC	1 cut(s)	1288
BamHI	GGATCC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	1288
BbvI	GCAGC	2 cut(s)	43, 541
BccI	CCATC	6 cut(s)	79, 541, 982, 1072, 1312, 1324
BciT130I	CCWGG	4 cut(s)	75, 339, 582, 1269
BciVI	GTATCC	1 cut(s)	567
BcoDI	GTCTC	2 cut(s)	792, 1227
BfmI	CTRYAG	2 cut(s)	759, 1245
BfrI	CTTAAG	2 cut(s)	451, 488
BfuAI	ACCTGC	1 cut(s)	1246
BfuI	GTATCC	1 cut(s)	567
BglI	GCCNNNNNGGC	1 cut(s)	221
BisI	GCNGC	2 cut(s)	32, 530
BlsI	GCNGC	2 cut(s)	33, 531
Bme1390I	CCNGG	4 cut(s)	75, 339, 582, 1269
Bme18I	GGWCC	2 cut(s)	280, 1340
BmgT120I	GGNCC	2 cut(s)	280, 1340
BmiI	GGNNCC	2 cut(s)	179, 1183
BmrFI	CCNGG	4 cut(s)	75, 339, 582, 1269
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	6 cut(s)	34, 113, 202, 367, 712, 754
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	1 cut(s)	114
BpmI	CTGGAG	4 cut(s)	843, 963, 996, 1008
BsaJI	CCNNGG	5 cut(s)	337, 338, 581, 1068, 1102
BsaXI	ACNNNNNCTCC	8 cut(s)	841, 871, 949, 979, 979, 1009, 1144, 1174
Bsc4I	CCNNNNNNNGG	4 cut(s)	204, 1103, 1268, 1366
Bse1I	ACTGG	7 cut(s)	267, 272, 392, 443, 770, 856, 1013
BseBI	CCWGG	4 cut(s)	75, 339, 582, 1269
BseDI	CCNNGG	5 cut(s)	337, 338, 581, 1068, 1102
BseGI	GGATG	5 cut(s)	83, 1064, 1081, 1141, 1316
BseLI	CCNNNNNNNGG	4 cut(s)	204, 1103, 1268, 1366
BseMII	CTCAG	5 cut(s)	157, 247, 452, 789, 900
BseNI	ACTGG	7 cut(s)	267, 272, 392, 443, 770, 856, 1013
BseRI	GAGGAG	2 cut(s)	1117, 1388
BseSI	GKGCMC	1 cut(s)	1288
BseXI	GCAGC	2 cut(s)	43, 541
BsgI	GTGCAG	1 cut(s)	1224
BshFI	GGCC	1 cut(s)	876
BsiHKAI	GWGCWC	1 cut(s)	1288
BsiSI	CCGG	1 cut(s)	560
BslFI	GGGAC	3 cut(s)	320, 355, 1191
BslI	CCNNNNNNNGG	4 cut(s)	204, 1103, 1268, 1366
BsmAI	GTCTC	2 cut(s)	792, 1227
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	3 cut(s)	320, 355, 1191
BsnI	GGCC	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	1288
Bsp143I	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
BspACI	CCGC	2 cut(s)	563, 969
BspANI	GGCC	1 cut(s)	876
BspCNI	CTCAG	5 cut(s)	156, 246, 453, 790, 899
BspLI	GGNNCC	2 cut(s)	179, 1183
BspMI	ACCTGC	1 cut(s)	1246
BspPI	GGATC	6 cut(s)	172, 176, 185, 413, 610, 1351
BspTI	CTTAAG	2 cut(s)	451, 488
BsrBI	CCGCTC	1 cut(s)	971
BsrI	ACTGG	7 cut(s)	267, 272, 392, 443, 770, 856, 1013
BssECI	CCNNGG	5 cut(s)	337, 338, 581, 1068, 1102
BssMI	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	4 cut(s)	75, 339, 582, 1269
Bst4CI	ACNGT	7 cut(s)	191, 244, 508, 574, 1043, 1106, 1156
BstAFI	CTTAAG	2 cut(s)	451, 488
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstDEI	CTNAG	6 cut(s)	143, 233, 461, 707, 798, 886
BstDSI	CCRYGG	1 cut(s)	1102
BstF5I	GGATG	5 cut(s)	83, 1064, 1081, 1141, 1316
BstKTI	GATC	7 cut(s)	171, 180, 421, 600, 618, 1359, 1389
BstMAI	GTCTC	2 cut(s)	792, 1227
BstMBI	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 31, 123, 221
BstNI	CCWGG	4 cut(s)	75, 339, 582, 1269
BstSCI	CCNGG	4 cut(s)	73, 337, 580, 1267
BstSFI	CTRYAG	2 cut(s)	759, 1245
BstSLI	GKGCMC	1 cut(s)	1288
BstV1I	GCAGC	2 cut(s)	43, 541
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	4 cut(s)	168, 177, 615, 1356
BstXI	CCANNNNNNTGG	1 cut(s)	1109
BstYI	RGATCY	4 cut(s)	168, 177, 615, 1356
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	876
BtgI	CCRYGG	1 cut(s)	1102
BtsCI	GGATG	5 cut(s)	83, 1064, 1081, 1141, 1316
BtsIMutI	CAGTG	4 cut(s)	241, 450, 570, 849
BveI	ACCTGC	1 cut(s)	1246
CaiI	CAGNNNCTG	1 cut(s)	619
Cfr13I	GGNCC	2 cut(s)	280, 1340
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	2 cut(s)	458, 936
CspCI	CAANNNNNGTGG	2 cut(s)	807, 842
CviAII	CATG	5 cut(s)	41, 364, 793, 1092, 1229
CviQI	GTAC	2 cut(s)	458, 936
DdeI	CTNAG	6 cut(s)	143, 233, 461, 707, 798, 886
DpnI	GATC	7 cut(s)	170, 179, 420, 599, 617, 1358, 1388
DpnII	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
Eco130I	CCWWGG	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	280, 1340
Eco57I	CTGAAG	4 cut(s)	97, 241, 572, 1314
EcoO109I	RGGNCCY	1 cut(s)	1340
EcoRI	GAATTC	1 cut(s)	1113
EcoRII	CCWGG	4 cut(s)	73, 337, 580, 1267
EcoRV	GATATC	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	1068
EcoT22I	ATGCAT	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	1068
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	5 cut(s)	44, 367, 796, 1095, 1232
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FaqI	GGGAC	3 cut(s)	320, 355, 1191
FatI	CATG	5 cut(s)	40, 363, 792, 1091, 1228
FauI	CCCGC	2 cut(s)	556, 976
Fnu4HI	GCNGC	2 cut(s)	32, 530
FokI	GGATG	5 cut(s)	90, 1051, 1068, 1128, 1303
Fsp4HI	GCNGC	2 cut(s)	32, 530
GluI	GCNGC	2 cut(s)	32, 530
GsuI	CTGGAG	4 cut(s)	843, 963, 996, 1008
HaeIII	GGCC	1 cut(s)	876
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	774
Hin1II	CATG	5 cut(s)	44, 367, 796, 1095, 1232
HinfI	GANTC	8 cut(s)	37, 99, 439, 547, 567, 577, 1204, 1380
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	7 cut(s)	23, 59, 520, 1026, 1122, 1227, 1299
Hpy166II	GTNNAC	4 cut(s)	458, 938, 1018, 1286
Hpy188I	TCNGA	7 cut(s)	61, 260, 299, 418, 552, 652, 799
Hpy188III	TCNNGA	5 cut(s)	175, 980, 1110, 1377, 1384
Hpy8I	GTNNAC	4 cut(s)	458, 938, 1018, 1286
HpyAV	CCTTC	4 cut(s)	191, 972, 1206, 1320
HpyCH4III	ACNGT	7 cut(s)	191, 244, 508, 574, 1043, 1106, 1156
HpyCH4IV	ACGT	1 cut(s)	1411
HpyCH4V	TGCA	9 cut(s)	25, 367, 380, 703, 733, 947, 1172, 1241, 1286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 31, 123, 221
HpyF3I	CTNAG	6 cut(s)	143, 233, 461, 707, 798, 886
HpySE526I	ACGT	1 cut(s)	1411
Hsp92II	CATG	5 cut(s)	44, 367, 796, 1095, 1232
Kzo9I	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
LmnI	GCTCC	5 cut(s)	436, 682, 976, 1130, 1264
Lsp1109I	GCAGC	2 cut(s)	43, 541
LweI	GCATC	6 cut(s)	34, 113, 202, 367, 712, 754
MaeII	ACGT	1 cut(s)	1411
MaeIII	GTNAC	3 cut(s)	508, 1233, 1407
MalI	GATC	7 cut(s)	170, 179, 420, 599, 617, 1358, 1388
MbiI	CCGCTC	1 cut(s)	971
MboI	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
MboII	GAAGA	6 cut(s)	48, 119, 163, 312, 912, 1320
MfeI	CAATTG	1 cut(s)	1217
MflI	RGATCY	4 cut(s)	168, 177, 615, 1356
MhlI	GDGCHC	1 cut(s)	1288
MlyI	GAGTC	3 cut(s)	46, 1213, 1374
Mph1103I	ATGCAT	1 cut(s)	382
MslI	CAYNNNNRTG	2 cut(s)	45, 372
MspCI	CTTAAG	2 cut(s)	451, 488
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	4 cut(s)	75, 339, 582, 1269
MunI	CAATTG	1 cut(s)	1217
MvaI	CCWGG	4 cut(s)	75, 339, 582, 1269
MwoI	GCNNNNNNNGC	4 cut(s)	22, 31, 123, 221
NdeII	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
NlaIII	CATG	5 cut(s)	44, 367, 796, 1095, 1232
NlaIV	GGNNCC	2 cut(s)	179, 1183
NmuCI	GTSAC	2 cut(s)	508, 1233
NsiI	ATGCAT	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	1246
PasI	CCCWGGG	1 cut(s)	338
PfeI	GAWTC	5 cut(s)	99, 439, 547, 567, 577
PfoI	TCCNGGA	2 cut(s)	73, 1267
PkrI	GCNGC	2 cut(s)	33, 531
PleI	GAGTC	3 cut(s)	45, 1212, 1374
PpsI	GAGTC	3 cut(s)	45, 1212, 1374
PpuMI	RGGWCCY	1 cut(s)	1340
Psp5II	RGGWCCY	1 cut(s)	1340
Psp6I	CCWGG	4 cut(s)	73, 337, 580, 1267
PspGI	CCWGG	4 cut(s)	73, 337, 580, 1267
PspN4I	GGNNCC	2 cut(s)	179, 1183
PspPI	GGNCC	2 cut(s)	280, 1340
PspPPI	RGGWCCY	1 cut(s)	1340
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	4 cut(s)	168, 177, 615, 1356
RsaI	GTAC	2 cut(s)	459, 937
RsaNI	GTAC	2 cut(s)	458, 936
RseI	CAYNNNNRTG	2 cut(s)	45, 372
SatI	GCNGC	2 cut(s)	32, 530
Sau3AI	GATC	7 cut(s)	168, 177, 418, 597, 615, 1356, 1386
Sau96I	GGNCC	2 cut(s)	280, 1340
SchI	GAGTC	3 cut(s)	46, 1213, 1374
ScrFI	CCNGG	4 cut(s)	75, 339, 582, 1269
SduI	GDGCHC	1 cut(s)	1288
SfaNI	GCATC	6 cut(s)	34, 113, 202, 367, 712, 754
SfcI	CTRYAG	2 cut(s)	759, 1245
SinI	GGWCC	2 cut(s)	280, 1340
SmiMI	CAYNNNNRTG	2 cut(s)	45, 372
SmlI	CTYRAG	2 cut(s)	451, 488
SmoI	CTYRAG	2 cut(s)	451, 488
SsiI	CCGC	2 cut(s)	563, 969
StyD4I	CCNGG	4 cut(s)	73, 337, 580, 1267
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	7 cut(s)	191, 244, 508, 574, 1043, 1106, 1156
TaiI	ACGT	1 cut(s)	1414
TaqI	TCGA	2 cut(s)	83, 596
TatI	WGTACW	1 cut(s)	457
TfiI	GAWTC	5 cut(s)	99, 439, 547, 567, 577
TscAI	CASTG	4 cut(s)	241, 450, 577, 856
TseFI	GTSAC	2 cut(s)	508, 1233
TseI	GCWGC	2 cut(s)	31, 529
Tsp45I	GTSAC	2 cut(s)	508, 1233
TspGWI	ACGGA	1 cut(s)	1349
TspRI	CASTG	4 cut(s)	241, 450, 577, 856
Vha464I	CTTAAG	2 cut(s)	451, 488
VneI	GTGCAC	1 cut(s)	1284
VpaK11BI	GGWCC	2 cut(s)	280, 1340
XapI	RAATTY	3 cut(s)	52, 1113, 1370
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.