Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Reverse (-)

18521336 .. 18529501

Gene Structure 8166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTGCCGTCATGATTTGTCAGCAGGCGAGGCGGTTTCAATCGAAGAGAATCTCTTGATATATTGCAAGCCGGTTGAGCTCTACAATATTCTTCGCCCTCGTGCTTTGCATAATCCTTTATTTCTCCGTAGATGTTTGCGATACAAAATCCAAGCAAAGCATAAACGGAGGTTCAATGCTGGGACTGTAATATTCAACTATAAGGACTACTGCAACACTTTACAAAAAACTGAAGTCACCGAAGACTTCTCATGTCCCTTTTGCTTGATGCAATGTGCAAGCTTTAAGGGTCTGCGGTATCACTTGTGCTCGTCGCATGACTTATTCAACTTTGAGTTTTGGGTAACTGGAGAGTATCGGGCAGTGAATGTTTCTGTTAAAACTGATACATTGAGATCTGAGACTGTAGCAGAAGGAGCAGGCCCACAACTTCAAACATTCTTCTTCTGTTCAAGGCCAAGAAAACGCAGGTCGCTGGACTGTGGTCAAAATATAAAGCATGTTAATGTCCAATTCTTGGAGTTGGACTCAAGTATACTAACGAGCGAAGGTGCACAGAAAGGACTTTTGGTGAATGGTAATGGTGAGAAGGCTCCCGATCTGCTTCCTAGTGGGGTAGATATCCAGAATGGAAGGCAAGGACAAGAAAACAATGGTCCTCATAATCCTAGACCGATGGAATCTATAAAATGTGTTACATCAAGTTCCAGTGCTCCTGGTATTACAATTGCTGTTGCTCAACCTTCTCTGGACCCTAATTGTGTTAAATTGCAATCTGGAAGTGATTGTGCACCCCCTGCTAAAATGAGGAAGTTAAATGGAGAGCGATCAGACCCTAAAAACAGCCGTATGCTCCTGCAGAAACGACAGTTCTATCATTCTCACAGAGTCCAGCCCATGGAGTTGGAGCAAGTATTATCAGATCTGGATAGCGAAGATGAAGCTGATGATGACGTTGCAGATCTTGAAGATCGGAGGATGCTTGATGATTTTGTAGATGTTACCAAAGATGAAAAGCAGCTGATGCACCTTTGGAACTCGTTTGTGCGGAGGCAAAGTGTGCTGGCAGATGCTCATGTTCCCTGGGCATGTGAGGCATTTTCAAGACTTCATGGACAGGAGCTAGTCTCCTCTCCAGCTCTTTTCTGGTGTTGGAGATTATTCATGGTCAAACTTTGGAATCACGGTCTTCTTGATGCCTGCACAATCAATAGTTGCAATGTCATTCTCAATGGATACAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

415

Amino Acids

47.19

Weight (kDa)

7.16

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_SUZ12	PF23320	61 - 129	5e-31	Polycomb protein SUZ12-like, Zn domain
VEFS-Box	PF09733	281 - 403	5.1e-55	VEFS-Box of polycomb protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	459
AccB7I	CCANNNNNTGG	2 cut(s)	517, 898
AccI	GTMKAC	1 cut(s)	535
AciI	CCGC	3 cut(s)	32, 295, 1048
AcuI	CTGAAG	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	517, 898
AgsI	TTSAA	8 cut(s)	39, 175, 196, 328, 434, 453, 968, 1104
AjnI	CCWGG	2 cut(s)	715, 1082
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AluBI	AGCT	6 cut(s)	79, 282, 944, 1021, 1123, 1139
AluI	AGCT	6 cut(s)	79, 282, 944, 1021, 1123, 1139
Alw21I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
Alw26I	GTCTC	2 cut(s)	395, 1132
Alw44I	GTGCAC	2 cut(s)	552, 789
AoxI	GGCC	2 cut(s)	421, 455
ApaLI	GTGCAC	2 cut(s)	552, 789
ApeKI	GCWGC	1 cut(s)	1018
AspS9I	GGNCC	3 cut(s)	422, 656, 751
AsuHPI	GGTGA	3 cut(s)	229, 583, 596
AvaII	GGWCC	2 cut(s)	656, 751
BaeGI	GKGCMC	2 cut(s)	556, 793
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	249, 1181
Bbv12I	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	2 cut(s)	717, 1084
BciVI	GTATCC	1 cut(s)	1229
BcoDI	GTCTC	2 cut(s)	395, 1132
BfaI	CTAG	4 cut(s)	609, 669, 1124, 1246
BfmI	CTRYAG	2 cut(s)	405, 857
BfuAI	ACCTGC	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	1229
BglII	AGATCT	3 cut(s)	395, 922, 961
BisI	GCNGC	1 cut(s)	1019
BlsI	GCNGC	1 cut(s)	1020
Bme1390I	CCNGG	2 cut(s)	717, 1084
Bme18I	GGWCC	2 cut(s)	656, 751
BmgT120I	GGNCC	3 cut(s)	422, 656, 751
BmiI	GGNNCC	2 cut(s)	594, 753
BmrFI	CCNGG	2 cut(s)	717, 1084
BmsI	GCATC	5 cut(s)	258, 969, 1014, 1060, 1186
BoxI	GACNNNNGTC	1 cut(s)	483
BpiI	GAAGAC	2 cut(s)	249, 1181
BplI	GAGNNNNNCTC	4 cut(s)	512, 544, 1112, 1144
BpmI	CTGGAG	2 cut(s)	369, 1119
BpuEI	CTTGAG	1 cut(s)	514
BsaJI	CCNNGG	3 cut(s)	897, 1082, 1083
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 898
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	352, 708
Bse3DI	GCAATG	2 cut(s)	278, 1225
BseBI	CCWGG	2 cut(s)	717, 1084
BseDI	CCNNGG	3 cut(s)	897, 1082, 1083
BseGI	GGATG	1 cut(s)	984
BseLI	CCNNNNNNNGG	2 cut(s)	517, 898
BseMI	GCAATG	2 cut(s)	278, 1225
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	2 cut(s)	352, 708
BseRI	GAGGAG	1 cut(s)	1120
BseSI	GKGCMC	2 cut(s)	556, 793
BseXI	GCAGC	1 cut(s)	1030
BseYI	CCCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	1186
BshFI	GGCC	2 cut(s)	423, 457
BsiHKAI	GWGCWC	5 cut(s)	81, 311, 556, 715, 793
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	2 cut(s)	196, 240
BslI	CCNNNNNNNGG	2 cut(s)	517, 898
BsmAI	GTCTC	2 cut(s)	395, 1132
BsmFI	GGGAC	2 cut(s)	196, 240
BsnI	GGCC	2 cut(s)	423, 457
Bsp1286I	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
Bsp143I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	3 cut(s)	32, 295, 1048
BspANI	GGCC	2 cut(s)	423, 457
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	594, 753
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	278, 1225
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	352, 708
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	897, 1082, 1083
BssMI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BssNAI	GTATAC	1 cut(s)	536
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	897
Bst1107I	GTATAC	1 cut(s)	536
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	2 cut(s)	717, 1084
Bst4CI	ACNGT	5 cut(s)	187, 406, 482, 870, 1187
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	3 cut(s)	797, 1024, 1060
BstC8I	GCNNGC	6 cut(s)	25, 68, 280, 421, 1065, 1201
BstDEI	CTNAG	1 cut(s)	399
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	984
BstKTI	GATC	6 cut(s)	398, 601, 830, 925, 964, 973
BstMAI	GTCTC	2 cut(s)	395, 1132
BstMBI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1024, 1060, 1094
BstNI	CCWGG	2 cut(s)	717, 1084
BstNSI	RCATGY	2 cut(s)	503, 1092
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSCI	CCNGG	2 cut(s)	715, 1082
BstSFI	CTRYAG	2 cut(s)	405, 857
BstSLI	GKGCMC	2 cut(s)	556, 793
BstV1I	GCAGC	1 cut(s)	1030
BstV2I	GAAGAC	2 cut(s)	249, 1181
BstX2I	RGATCY	3 cut(s)	395, 922, 961
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	3 cut(s)	395, 922, 961
BstZ17I	GTATAC	1 cut(s)	536
BsuI	GTATCC	1 cut(s)	1229
BsuRI	GGCC	2 cut(s)	423, 457
BtgI	CCRYGG	1 cut(s)	897
BtsCI	GGATG	1 cut(s)	984
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	2 cut(s)	369, 715
BveI	ACCTGC	1 cut(s)	459
Cac8I	GCNNGC	6 cut(s)	25, 68, 280, 421, 1065, 1201
CciI	TCATGA	1 cut(s)	10
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	3 cut(s)	422, 656, 751
CviAII	CATG	9 cut(s)	11, 252, 317, 500, 898, 1076, 1089, 1112, 1165
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
DpnII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	897
Eco24I	GRGCYC	1 cut(s)	81
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	656, 751
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	715, 1082
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	897
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	9 cut(s)	14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
FaqI	GGGAC	2 cut(s)	196, 240
FatI	CATG	9 cut(s)	10, 251, 316, 499, 897, 1075, 1088, 1111, 1164
FblI	GTMKAC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	1019
FokI	GGATG	1 cut(s)	991
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	1019
FspBI	CTAG	4 cut(s)	609, 669, 1124, 1246
GluI	GCNGC	1 cut(s)	1019
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	2 cut(s)	369, 1119
HaeIII	GGCC	2 cut(s)	423, 457
HapII	CCGG	1 cut(s)	71
Hin1II	CATG	9 cut(s)	14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	5 cut(s)	49, 527, 680, 888, 1180
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	3 cut(s)	229, 583, 596
Hpy166II	GTNNAC	3 cut(s)	536, 554, 791
Hpy188I	TCNGA	4 cut(s)	400, 832, 922, 975
Hpy8I	GTNNAC	3 cut(s)	536, 554, 791
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	407, 542, 583, 627, 753
HpyCH4III	ACNGT	5 cut(s)	187, 406, 482, 870, 1187
HpyCH4IV	ACGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1024, 1060, 1094
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	1 cut(s)	954
Hsp92II	CATG	9 cut(s)	14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
Kzo9I	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
LmnI	GCTCC	6 cut(s)	416, 598, 718, 858, 907, 1120
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	5 cut(s)	258, 969, 1014, 1060, 1186
MaeI	CTAG	4 cut(s)	609, 669, 1124, 1246
MaeII	ACGT	1 cut(s)	954
MaeIII	GTNAC	4 cut(s)	235, 343, 694, 1000
MalI	GATC	6 cut(s)	397, 600, 829, 924, 963, 972
MboI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
MboII	GAAGA	8 cut(s)	56, 83, 254, 433, 436, 947, 980, 1181
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	3 cut(s)	395, 922, 961
MhlI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
MluCI	AATT	4 cut(s)	512, 726, 757, 767
MlyI	GAGTC	2 cut(s)	521, 897
MmeI	TCCRAC	3 cut(s)	504, 885, 1133
MnlI	CCTC	9 cut(s)	22, 108, 162, 669, 801, 969, 1044, 1087, 1141
MseI	TTAA	5 cut(s)	285, 378, 504, 765, 815
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	1 cut(s)	1021
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	2 cut(s)	717, 1084
MunI	CAATTG	1 cut(s)	726
MvaI	CCWGG	2 cut(s)	717, 1084
MwoI	GCNNNNNNNGC	7 cut(s)	29, 76, 416, 797, 1024, 1060, 1094
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
NlaIII	CATG	9 cut(s)	14, 255, 320, 503, 901, 1079, 1092, 1115, 1168
NlaIV	GGNNCC	2 cut(s)	594, 753
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	2 cut(s)	503, 1092
PagI	TCATGA	1 cut(s)	10
PasI	CCCWGGG	1 cut(s)	1083
PfeI	GAWTC	3 cut(s)	49, 680, 1180
PflMI	CCANNNNNTGG	2 cut(s)	517, 898
PkrI	GCNGC	1 cut(s)	1020
PleI	GAGTC	2 cut(s)	521, 896
PpsI	GAGTC	2 cut(s)	521, 896
PshAI	GACNNNNGTC	1 cut(s)	483
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	2 cut(s)	715, 1082
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	715, 1082
PspN4I	GGNNCC	2 cut(s)	594, 753
PspPI	GGNCC	3 cut(s)	422, 656, 751
PstI	CTGCAG	1 cut(s)	861
PsuI	RGATCY	3 cut(s)	395, 922, 961
PvuII	CAGCTG	1 cut(s)	1021
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	5 cut(s)	285, 378, 504, 765, 815
SatI	GCNGC	1 cut(s)	1019
Sau3AI	GATC	6 cut(s)	395, 598, 827, 922, 961, 970
Sau96I	GGNCC	3 cut(s)	422, 656, 751
SchI	GAGTC	2 cut(s)	521, 897
ScrFI	CCNGG	2 cut(s)	717, 1084
SduI	GDGCHC	5 cut(s)	81, 311, 556, 715, 793
SfaNI	GCATC	5 cut(s)	258, 969, 1014, 1060, 1186
SfcI	CTRYAG	2 cut(s)	405, 857
SinI	GGWCC	2 cut(s)	656, 751
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	4 cut(s)	512, 726, 757, 767
SsiI	CCGC	3 cut(s)	32, 295, 1048
SspI	AATATT	2 cut(s)	88, 192
SspMI	CTAG	4 cut(s)	609, 669, 1124, 1246
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	715, 1082
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	5 cut(s)	187, 406, 482, 870, 1187
TaiI	ACGT	1 cut(s)	957
TaqI	TCGA	1 cut(s)	42
TaqII	GACCGA	1 cut(s)	688
TasI	AATT	4 cut(s)	512, 726, 757, 767
TfiI	GAWTC	3 cut(s)	49, 680, 1180
Tru1I	TTAA	5 cut(s)	285, 378, 504, 765, 815
Tru9I	TTAA	5 cut(s)	285, 378, 504, 765, 815
TscAI	CASTG	2 cut(s)	369, 715
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	1018
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	954, 1026, 1100, 1153
TspGWI	ACGGA	2 cut(s)	116, 181
TspRI	CASTG	2 cut(s)	369, 715
Van91I	CCANNNNNTGG	2 cut(s)	517, 898
VneI	GTGCAC	2 cut(s)	552, 789
VpaK11BI	GGWCC	2 cut(s)	656, 751
XceI	RCATGY	2 cut(s)	503, 1092
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1143
XmiI	GTMKAC	1 cut(s)	535
XspI	CTAG	4 cut(s)	609, 669, 1124, 1246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.