MD08G1228600.v1.1

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
29475090 .. 29480228
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1228600.v1.1.491

Sequence Viewer

Length: 1413 bp
ATGGGGAAGGGTGAAGCAAATCTGCACCAGCAGCAGCCGAGTCATGAGGGTCAGAGTGCTTCGGGACTCATCTGTCCTGGATGTTCGATGGTTTTCAACCGATTCGCCAAAGGCTTGAGCTTTAGATGCGTCTTCGTTTTAGTTCTCAGTTTATCGGTTTTTCTCTCTGGGATCTTTTGGATCCTTCCTCACCGCGCTACCAACTCGGGGTTTGATGCCACACAGGCAATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTACGGACCTTGTTCCACACATTGGAAGATTAGAATATGATATCAATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATCTTGTCTATGCACCAATTTCCTGCACATAATTGGACAGATGTGGTGTTTGGTTTTCTTTCTGATCCAATAAATGTTCCAATAGTTCCTGTGTCCTTAAGTGTGCTGAGGTCATCCTTAGTTGAGCTTTTCCTTAAGCAATCCAATCTTACACTGACAACATCAATTTTCGGGCAGCCATCTACATTGGAGATTCTGAAGTATCCGGGGGGAATCACTGTGATACCTGGTCAACCTGCTTCAATCTGGCAGTTACCCGAGATTTTATTTAATTTTACTCTCAATAATTATATAGATGATATAGTGGAAAATTTTGGCGAGTTAAAGGAGCAGTTGAAGTTTGGATTGTATCTGAGGCCTTATGAGAATGTATATTTGCAAATAACAAACACAATGGGTTCAACAACAGCAGCCCCAGTTGTAGTTCAAGCTTCCCTAATGTCTGAGTTTGGAGGCTTTGGGCCCCAGAGATTAAGGCAGTTGGCTCAAATAATCACGGGTTCTCCCACAAAAAATCTTGGCCTGGATAACTCAGTGTTTGGTAAAATTAAAAGTATCAGTTTATCTTCTTATCTGAAAGGTACACTCTCCGCAACCCCTCCAACTGTTTCTCCAGCTCCAACTCCAGAGCCATCAATTTCTCCGTATCTTGCTTCTCCAGTTTACGCTCCAGCACCCTCACCTGACATTCATCATCTCTCATCAGCACCATCCAAGGTACCTGCACATCCTCATCCATGTCCGCACCAAGGTTCTAGAATTCCTCCATCCTCCCCACCAACTTCTCGTTCTTACCCTACTGTTCCTCCTACATATCCTCCTAGAATTCCTCCATCCTCCTCACCACCTTCATCTCAATTGTCCCCACATGTTTCACCTGCTCCTGTAGTGTCTTATGCTCCCAGTCCAGAAGACAAGGGAATTGCACAAGACTTGATATCTCCATCACCTGGCCCATCCCTGTCGTCTTTAGCAGTAGGACCTTTGTACAAGGAGATCCGGTTATTGCAACTTTCAGGAGTCTTCATCTTTCTTCTCTTCTGTTGGTCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

471

Amino Acids

50.65

Weight (kDa)

8.49

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 86 - 177 2.2e-28 Domain of unknown function (DUF7036)
DUF7036 PF23041 210 - 300 4.7e-19 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1243
AasI GACNNNNNNGTC 1 cut(s) 72
Acc36I ACCTGC 3 cut(s) 601, 1087, 1243
Acc65I GGTACC 1 cut(s) 1075
AccB1I GGYRCC 1 cut(s) 1075
AccB7I CCANNNNNTGG 2 cut(s) 299, 1307
AccII CGCG 1 cut(s) 195
AciI CCGC 3 cut(s) 193, 948, 1100
AclWI GGATC 5 cut(s) 175, 179, 188, 416, 1348
AcsI RAATTY 3 cut(s) 667, 1116, 1182
AcuI CTGAAG 2 cut(s) 244, 575
AfaI GTAC 4 cut(s) 346, 940, 1077, 1346
AfiI CCNNNNNNNGG 4 cut(s) 207, 299, 1106, 1307
AflII CTTAAG 2 cut(s) 454, 491
AflIII ACRYGT 1 cut(s) 1225
AgsI TTSAA 5 cut(s) 97, 600, 694, 759, 785
AjnI CCWGG 5 cut(s) 76, 340, 583, 879, 1306
AjuI GAANNNNNNNTTGG 2 cut(s) 1129, 1161
AluBI AGCT 5 cut(s) 120, 235, 484, 788, 974
AluI AGCT 5 cut(s) 120, 235, 484, 788, 974
AlwI GGATC 5 cut(s) 175, 179, 188, 416, 1348
Ama87I CYCGRG 2 cut(s) 205, 614
AoxI GGCC 4 cut(s) 713, 818, 877, 1309
ApaI GGGCCC 1 cut(s) 822
ApeKI GCWGC 4 cut(s) 31, 34, 532, 767
ApoI RAATTY 3 cut(s) 667, 1116, 1182
Asp718I GGTACC 1 cut(s) 1075
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 5 cut(s) 283, 818, 819, 1310, 1337
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 6 cut(s) 23, 182, 1029, 1191, 1224, 1296
AvaI CYCGRG 2 cut(s) 205, 614
AvaII GGWCC 2 cut(s) 283, 1337
BaeGI GKGCMC 1 cut(s) 822
BaeI ACNNNNGTAYC 2 cut(s) 336, 369
BamHI GGATCC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 1075
BanII GRGCYC 1 cut(s) 822
BbsI GAAGAC 3 cut(s) 124, 1275, 1372
BbvCI CCTCAGC 1 cut(s) 464
BbvI GCAGC 4 cut(s) 43, 46, 544, 779
BccI CCATC 8 cut(s) 82, 544, 997, 1075, 1132, 1198, 1309, 1321
BciT130I CCWGG 5 cut(s) 78, 342, 585, 881, 1308
BciVI GTATCC 1 cut(s) 570
BcnI CCSGG 1 cut(s) 564
BfaI CTAG 2 cut(s) 1113, 1179
BfmI CTRYAG 1 cut(s) 1242
BfrI CTTAAG 2 cut(s) 454, 491
BfuAI ACCTGC 3 cut(s) 601, 1087, 1243
BfuI GTATCC 1 cut(s) 570
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 4 cut(s) 32, 35, 533, 768
BlsI GCNGC 4 cut(s) 33, 36, 534, 769
Bme1390I CCNGG 6 cut(s) 78, 342, 564, 585, 881, 1308
Bme18I GGWCC 2 cut(s) 283, 1337
BmeT110I CYCGRG 2 cut(s) 205, 614
BmgT120I GGNCC 5 cut(s) 283, 818, 819, 1310, 1337
BmiI GGNNCC 4 cut(s) 182, 820, 821, 1077
BmrFI CCNGG 6 cut(s) 78, 342, 564, 585, 881, 1308
BmrI ACTGGG 2 cut(s) 767, 1254
BmsI GCATC 2 cut(s) 116, 205
BmuI ACTGGG 2 cut(s) 767, 1254
BpiI GAAGAC 3 cut(s) 124, 1275, 1372
BpmI CTGGAG 4 cut(s) 954, 966, 999, 1011
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 340, 563, 1071, 1105
BsaWI WCCGGW 1 cut(s) 1356
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 299, 1106, 1307
Bse1I ACTGG 5 cut(s) 270, 275, 773, 1016, 1260
BseBI CCWGG 5 cut(s) 78, 342, 585, 881, 1308
BseDI CCNNGG 4 cut(s) 340, 563, 1071, 1105
BseGI GGATG 8 cut(s) 86, 470, 1067, 1084, 1090, 1124, 1190, 1313
BseLI CCNNNNNNNGG 4 cut(s) 207, 299, 1106, 1307
BseMII CTCAG 6 cut(s) 160, 250, 455, 701, 792, 903
BseNI ACTGG 5 cut(s) 270, 275, 773, 1016, 1260
BseRI GAGGAG 1 cut(s) 1186
BseSI GKGCMC 1 cut(s) 822
BseXI GCAGC 4 cut(s) 43, 46, 544, 779
BsgI GTGCAG 3 cut(s) 8, 366, 1065
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 4 cut(s) 715, 820, 879, 1311
BshNI GGYRCC 1 cut(s) 1075
BsiHKCI CYCGRG 2 cut(s) 205, 614
BsiSI CCGG 2 cut(s) 563, 1357
BslFI GGGAC 3 cut(s) 78, 323, 1204
BslI CCNNNNNNNGG 4 cut(s) 207, 299, 1106, 1307
BsmFI GGGAC 3 cut(s) 78, 323, 1204
BsnI GGCC 4 cut(s) 715, 820, 879, 1311
BsoBI CYCGRG 2 cut(s) 205, 614
Bsp120I GGGCCC 1 cut(s) 818
Bsp1286I GDGCHC 1 cut(s) 822
Bsp1407I TGTACA 1 cut(s) 1344
Bsp143I GATC 4 cut(s) 171, 180, 421, 1353
BspACI CCGC 3 cut(s) 193, 948, 1100
BspANI GGCC 4 cut(s) 715, 820, 879, 1311
BspCNI CTCAG 6 cut(s) 159, 249, 456, 702, 793, 902
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 43
BspLI GGNNCC 4 cut(s) 182, 820, 821, 1077
BspMI ACCTGC 3 cut(s) 601, 1087, 1243
BspPI GGATC 5 cut(s) 175, 179, 188, 416, 1348
BspT107I GGYRCC 1 cut(s) 1075
BspTI CTTAAG 2 cut(s) 454, 491
BsrGI TGTACA 1 cut(s) 1344
BsrI ACTGG 5 cut(s) 270, 275, 773, 1016, 1260
BssECI CCNNGG 4 cut(s) 340, 563, 1071, 1105
BssMI GATC 4 cut(s) 171, 180, 421, 1353
BssT1I CCWWGG 2 cut(s) 1071, 1105
Bst2UI CCWGG 5 cut(s) 78, 342, 585, 881, 1308
Bst4CI ACNGT 5 cut(s) 247, 577, 964, 1159, 1410
Bst6I CTCTTC 1 cut(s) 1400
BstAFI CTTAAG 2 cut(s) 454, 491
BstAUI TGTACA 1 cut(s) 1344
BstDEI CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
BstF5I GGATG 8 cut(s) 86, 470, 1067, 1084, 1090, 1124, 1190, 1313
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 4 cut(s) 174, 183, 424, 1356
BstMBI GATC 4 cut(s) 171, 180, 421, 1353
BstMWI GCNNNNNNNGC 3 cut(s) 31, 126, 224
BstNI CCWGG 5 cut(s) 78, 342, 585, 881, 1308
BstNSI RCATGY 1 cut(s) 1229
BstSCI CCNGG 6 cut(s) 76, 340, 562, 583, 879, 1306
BstSFI CTRYAG 1 cut(s) 1242
BstSLI GKGCMC 1 cut(s) 822
BstUI CGCG 1 cut(s) 195
BstV1I GCAGC 4 cut(s) 43, 46, 544, 779
BstV2I GAAGAC 3 cut(s) 124, 1275, 1372
BstX2I RGATCY 3 cut(s) 171, 180, 1353
BstYI RGATCY 3 cut(s) 171, 180, 1353
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 4 cut(s) 715, 820, 879, 1311
BtsCI GGATG 8 cut(s) 86, 470, 1067, 1084, 1090, 1124, 1190, 1313
BtsIMutI CAGTG 4 cut(s) 244, 509, 573, 897
BveI ACCTGC 3 cut(s) 601, 1087, 1243
CciI TCATGA 1 cut(s) 43
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 5 cut(s) 283, 818, 819, 1310, 1337
CseI GACGC 1 cut(s) 118
CsiI ACCWGGT 1 cut(s) 583
Csp6I GTAC 4 cut(s) 345, 939, 1076, 1345
CviAII CATG 3 cut(s) 44, 1095, 1226
CviQI GTAC 4 cut(s) 345, 939, 1076, 1345
DdeI CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
DpnI GATC 4 cut(s) 173, 182, 423, 1355
DpnII GATC 4 cut(s) 171, 180, 421, 1353
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 1400
EarI CTCTTC 1 cut(s) 1400
Eco130I CCWWGG 2 cut(s) 1071, 1105
Eco147I AGGCCT 1 cut(s) 715
Eco24I GRGCYC 1 cut(s) 822
Eco32I GATATC 2 cut(s) 319, 1296
Eco47I GGWCC 2 cut(s) 283, 1337
Eco57I CTGAAG 2 cut(s) 244, 575
Eco88I CYCGRG 2 cut(s) 205, 614
EcoO109I RGGNCCY 2 cut(s) 819, 1337
EcoRI GAATTC 2 cut(s) 1116, 1182
EcoRII CCWGG 5 cut(s) 76, 340, 583, 879, 1306
EcoRV GATATC 2 cut(s) 319, 1296
EcoT14I CCWWGG 2 cut(s) 1071, 1105
EcoT38I GRGCYC 1 cut(s) 822
ErhI CCWWGG 2 cut(s) 1071, 1105
FaeI CATG 3 cut(s) 47, 1098, 1229
FaqI GGGAC 3 cut(s) 78, 323, 1204
FatI CATG 3 cut(s) 43, 1094, 1225
Fnu4HI GCNGC 4 cut(s) 32, 35, 533, 768
FokI GGATG 8 cut(s) 93, 457, 1054, 1071, 1077, 1111, 1177, 1300
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 4 cut(s) 32, 35, 533, 768
FspBI CTAG 2 cut(s) 1113, 1179
GlaI GCGC 1 cut(s) 196
GluI GCNGC 4 cut(s) 32, 35, 533, 768
GsuI CTGGAG 4 cut(s) 954, 966, 999, 1011
HaeIII GGCC 4 cut(s) 715, 820, 879, 1311
HapII CCGG 2 cut(s) 563, 1357
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 197
Hin1II CATG 3 cut(s) 47, 1098, 1229
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 590
HindII GTYRAC 1 cut(s) 590
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 6 cut(s) 40, 66, 102, 550, 570, 1377
HpaII CCGG 2 cut(s) 563, 1357
HphI GGTGA 6 cut(s) 23, 182, 1029, 1191, 1224, 1296
Hpy166II GTNNAC 3 cut(s) 590, 941, 1021
Hpy188I TCNGA 7 cut(s) 54, 263, 421, 555, 711, 802, 933
Hpy188III TCNNGA 6 cut(s) 44, 63, 983, 1113, 1265, 1374
Hpy8I GTNNAC 3 cut(s) 590, 941, 1021
HpyAV CCTTC 2 cut(s) 194, 1215
HpyCH4III ACNGT 5 cut(s) 247, 577, 964, 1159, 1410
HpyCH4V TGCA 7 cut(s) 25, 370, 383, 736, 1082, 1283, 1366
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 126, 224
HpyF3I CTNAG 7 cut(s) 146, 236, 464, 475, 710, 801, 889
Hsp92II CATG 3 cut(s) 47, 1098, 1229
HspAI GCGC 1 cut(s) 195
KpnI GGTACC 1 cut(s) 1079
Kzo9I GATC 4 cut(s) 171, 180, 421, 1353
LmnI GCTCC 5 cut(s) 685, 979, 1030, 1243, 1261
Lsp1109I GCAGC 4 cut(s) 43, 46, 544, 779
LweI GCATC 2 cut(s) 116, 205
MabI ACCWGGT 1 cut(s) 583
MaeI CTAG 2 cut(s) 1113, 1179
MaeIII GTNAC 3 cut(s) 277, 609, 1404
MalI GATC 4 cut(s) 173, 182, 423, 1355
MboI GATC 4 cut(s) 171, 180, 421, 1353
MboII GAAGA 7 cut(s) 124, 315, 915, 1280, 1372, 1382, 1387
MfeI CAATTG 1 cut(s) 1214
MflI RGATCY 3 cut(s) 171, 180, 1353
MhlI GDGCHC 1 cut(s) 822
MlyI GAGTC 3 cut(s) 49, 60, 1386
MmeI TCCRAC 2 cut(s) 983, 1001
MseI TTAA 7 cut(s) 231, 455, 492, 627, 680, 830, 906
MspCI CTTAAG 2 cut(s) 454, 491
MspI CCGG 2 cut(s) 563, 1357
MspR9I CCNGG 6 cut(s) 78, 342, 564, 585, 881, 1308
MunI CAATTG 1 cut(s) 1214
MvaI CCWGG 5 cut(s) 78, 342, 585, 881, 1308
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 3 cut(s) 31, 126, 224
NciI CCSGG 1 cut(s) 564
NdeII GATC 4 cut(s) 171, 180, 421, 1353
NlaIII CATG 3 cut(s) 47, 1098, 1229
NlaIV GGNNCC 4 cut(s) 182, 820, 821, 1077
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 1404
NspI RCATGY 1 cut(s) 1229
PagI TCATGA 1 cut(s) 43
PaqCI CACCTGC 1 cut(s) 1243
PceI AGGCCT 1 cut(s) 715
PciI ACATGT 1 cut(s) 1225
PfeI GAWTC 3 cut(s) 102, 550, 570
PflMI CCANNNNNTGG 2 cut(s) 299, 1307
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 4 cut(s) 33, 36, 534, 769
PleI GAGTC 3 cut(s) 48, 60, 1385
PpsI GAGTC 3 cut(s) 48, 60, 1385
PpuMI RGGWCCY 1 cut(s) 1337
PscI ACATGT 1 cut(s) 1225
Psp5II RGGWCCY 1 cut(s) 1337
Psp6I CCWGG 5 cut(s) 76, 340, 583, 879, 1306
PspGI CCWGG 5 cut(s) 76, 340, 583, 879, 1306
PspN4I GGNNCC 4 cut(s) 182, 820, 821, 1077
PspOMI GGGCCC 1 cut(s) 818
PspPI GGNCC 5 cut(s) 283, 818, 819, 1310, 1337
PspPPI RGGWCCY 1 cut(s) 1337
PsuI RGATCY 3 cut(s) 171, 180, 1353
RsaI GTAC 4 cut(s) 346, 940, 1077, 1346
RsaNI GTAC 4 cut(s) 345, 939, 1076, 1345
SaqAI TTAA 7 cut(s) 231, 455, 492, 627, 680, 830, 906
SatI GCNGC 4 cut(s) 32, 35, 533, 768
Sau3AI GATC 4 cut(s) 171, 180, 421, 1353
Sau96I GGNCC 5 cut(s) 283, 818, 819, 1310, 1337
SchI GAGTC 3 cut(s) 49, 60, 1386
ScrFI CCNGG 6 cut(s) 78, 342, 564, 585, 881, 1308
SduI GDGCHC 1 cut(s) 822
SexAI ACCWGGT 1 cut(s) 583
SfaNI GCATC 2 cut(s) 116, 205
SfcI CTRYAG 1 cut(s) 1242
SinI GGWCC 2 cut(s) 283, 1337
SmlI CTYRAG 3 cut(s) 115, 454, 491
SmoI CTYRAG 3 cut(s) 115, 454, 491
SseBI AGGCCT 1 cut(s) 715
SsiI CCGC 3 cut(s) 193, 948, 1100
SspMI CTAG 2 cut(s) 1113, 1179
StuI AGGCCT 1 cut(s) 715
StyD4I CCNGG 6 cut(s) 76, 340, 562, 583, 879, 1306
StyI CCWWGG 2 cut(s) 1071, 1105
TaaI ACNGT 5 cut(s) 247, 577, 964, 1159, 1410
TaqI TCGA 1 cut(s) 86
TatI WGTACW 1 cut(s) 1344
TfiI GAWTC 3 cut(s) 102, 550, 570
Tru1I TTAA 7 cut(s) 231, 455, 492, 627, 680, 830, 906
Tru9I TTAA 7 cut(s) 231, 455, 492, 627, 680, 830, 906
TscAI CASTG 4 cut(s) 244, 516, 580, 897
TseFI GTSAC 1 cut(s) 1404
TseI GCWGC 4 cut(s) 31, 34, 532, 767
Tsp45I GTSAC 1 cut(s) 1404
TspDTI ATGAA 3 cut(s) 1037, 1197, 1372
TspGWI ACGGA 2 cut(s) 296, 990
TspRI CASTG 4 cut(s) 244, 516, 580, 897
Van91I CCANNNNNTGG 2 cut(s) 299, 1307
Vha464I CTTAAG 2 cut(s) 454, 491
VpaK11BI GGWCC 2 cut(s) 283, 1337
XapI RAATTY 3 cut(s) 667, 1116, 1182
XbaI TCTAGA 1 cut(s) 1112
XceI RCATGY 1 cut(s) 1229
XspI CTAG 2 cut(s) 1113, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.