Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

42227422 .. 42232143

Gene Structure 4722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGGAAAGGTGAGAAAAGCCTGCACCAGCAGCAGCAGCACAGCCACCAGAGTCATCAACCCCACGATTCTTCTTCTTCTGGGTTCGTCTGTCCTCAATGTTCCAGATGCTTCAACGGAATCGCCCACCAGTTCAGCTTTCGGTGCGTCTTCGTTTTGATTCTCGGATTATCGGTTTTTCTCTCCGGGATCTTCTGGATCCTTCCTCGGCATTCCGTCGATAATGGGTTCGATGCCAAAGAGGCCATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATATGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATGCCGTGAATGTTCCAATACTTCCAGTGTCCTTAAGTGTGCTGAAATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGACAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCAATCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATCTATGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCTGCAAGAAATCTCGGCCTTGATAACTCCGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTTTACCATGGTTCTACTCATCCAAGCTCCTCGCCGACTCCTCATTTAACCCTATCCCTCATCTCAAGTGGCCCCACATGCATCACCGCTCCTGGAGTGTCCTATGCTTCTAGTCCAGGCTACAAGAAAAGCGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTACTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

49.14

Weight (kDa)

8.8

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	92 - 183	2.5e-29	Domain of unknown function (DUF7036)
DUF7036	PF23041	216 - 306	1.2e-20	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1196
AciI	CCGC	4 cut(s)	632, 1194, 1266, 1289
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	3 cut(s)	193, 197, 206
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	2 cut(s)	262, 1047
AfaI	GTAC	2 cut(s)	364, 958
AfiI	CCNNNNNNNGG	1 cut(s)	317
AflII	CTTAAG	2 cut(s)	472, 509
AgsI	TTSAA	8 cut(s)	115, 618, 666, 777, 797, 803, 850, 952
AjnI	CCWGG	5 cut(s)	358, 580, 601, 1198, 1222
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
Alw26I	GTCTC	1 cut(s)	1260
AlwI	GGATC	3 cut(s)	193, 197, 206
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	5 cut(s)	243, 731, 895, 1177, 1295
ApeKI	GCWGC	5 cut(s)	31, 34, 37, 611, 706
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	1241
AspS9I	GGNCC	3 cut(s)	1022, 1178, 1295
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	6 cut(s)	23, 704, 990, 1065, 1183, 1254
AvaII	GGWCC	1 cut(s)	1022
BaeI	ACNNNNGTAYC	2 cut(s)	354, 387
BamHI	GGATCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BccI	CCATC	4 cut(s)	1003, 1033, 1267, 1285
BceAI	ACGGC	2 cut(s)	428, 549
BciT130I	CCWGG	5 cut(s)	360, 582, 603, 1200, 1224
BciVI	GTATCC	1 cut(s)	588
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	1260
BfaI	CTAG	1 cut(s)	1218
BfmI	CTRYAG	2 cut(s)	780, 1017
BfrI	CTTAAG	2 cut(s)	472, 509
BfuI	GTATCC	1 cut(s)	588
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
BlsI	GCNGC	5 cut(s)	33, 36, 39, 613, 708
Bme1390I	CCNGG	6 cut(s)	187, 360, 582, 603, 1200, 1224
Bme18I	GGWCC	1 cut(s)	1022
BmgT120I	GGNCC	3 cut(s)	1022, 1178, 1295
BmiI	GGNNCC	2 cut(s)	200, 1180
BmrFI	CCNGG	6 cut(s)	187, 360, 582, 603, 1200, 1224
BmrI	ACTGGG	2 cut(s)	785, 1331
BmsI	GCATC	7 cut(s)	98, 223, 410, 430, 545, 733, 1197
BmuI	ACTGGG	2 cut(s)	785, 1331
BpiI	GAAGAC	1 cut(s)	142
BpmI	CTGGAG	2 cut(s)	972, 1221
Bpu10I	CCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	1156, 1270
BpuMI	CCSGG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	1260
BsaJI	CCNNGG	5 cut(s)	206, 358, 581, 602, 1114
BsaXI	ACNNNNNCTCC	6 cut(s)	862, 892, 970, 1000, 1078, 1108
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
Bse1I	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1326
BseBI	CCWGG	5 cut(s)	360, 582, 603, 1200, 1224
BseDI	CCNNGG	5 cut(s)	206, 358, 581, 602, 1114
BseGI	GGATG	3 cut(s)	748, 1090, 1126
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	268, 701, 875
BseNI	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1326
BseRI	GAGGAG	3 cut(s)	1086, 1126, 1137
BseXI	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	245, 733, 897, 1179, 1297
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	2 cut(s)	341, 843
BslI	CCNNNNNNNGG	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	1260
BsmFI	GGGAC	2 cut(s)	341, 843
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	5 cut(s)	245, 733, 897, 1179, 1297
Bso31I	GGTCTC	1 cut(s)	1260
Bsp143I	GATC	2 cut(s)	189, 198
Bsp19I	CCATGG	1 cut(s)	1114
BspACI	CCGC	4 cut(s)	632, 1194, 1266, 1289
BspANI	GGCC	5 cut(s)	245, 733, 897, 1179, 1297
BspCNI	CTCAG	3 cut(s)	267, 702, 874
BspLI	GGNNCC	2 cut(s)	200, 1180
BspMAI	CTGCAG	1 cut(s)	1021
BspPI	GGATC	3 cut(s)	193, 197, 206
BspTI	CTTAAG	2 cut(s)	472, 509
BspTNI	GGTCTC	1 cut(s)	1260
BsrBI	CCGCTC	1 cut(s)	1196
BsrI	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1326
BssECI	CCNNGG	5 cut(s)	206, 358, 581, 602, 1114
BssMI	GATC	2 cut(s)	189, 198
BssT1I	CCWWGG	1 cut(s)	1114
Bst2UI	CCWGG	5 cut(s)	360, 582, 603, 1200, 1224
Bst4CI	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
Bst6I	CTCTTC	2 cut(s)	1066, 1343
BstAFI	CTTAAG	2 cut(s)	472, 509
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	254, 710, 861, 1007
BstDSI	CCRYGG	1 cut(s)	1114
BstF5I	GGATG	3 cut(s)	748, 1090, 1126
BstHHI	GCGC	1 cut(s)	1241
BstKTI	GATC	2 cut(s)	192, 201
BstMAI	GTCTC	1 cut(s)	1260
BstMBI	GATC	2 cut(s)	189, 198
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 37, 144, 242, 631, 703, 730, 1185, 1245
BstNI	CCWGG	5 cut(s)	360, 582, 603, 1200, 1224
BstNSI	RCATGY	1 cut(s)	1188
BstSCI	CCNGG	6 cut(s)	185, 358, 580, 601, 1198, 1222
BstSFI	CTRYAG	2 cut(s)	780, 1017
BstV1I	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	189, 198
BstYI	RGATCY	2 cut(s)	189, 198
BsuI	GTATCC	1 cut(s)	588
BsuRI	GGCC	5 cut(s)	245, 733, 897, 1179, 1297
BtgI	CCRYGG	1 cut(s)	1114
BtsCI	GGATG	3 cut(s)	748, 1090, 1126
BtsIMutI	CAGTG	3 cut(s)	262, 471, 591
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	1 cut(s)	1241
Cfr13I	GGNCC	3 cut(s)	1022, 1178, 1295
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	363, 957
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	4 cut(s)	385, 1104, 1115, 1185
CviQI	GTAC	2 cut(s)	363, 957
DdeI	CTNAG	4 cut(s)	254, 710, 861, 1007
DpnI	GATC	2 cut(s)	191, 200
DpnII	GATC	2 cut(s)	189, 198
Eam1104I	CTCTTC	2 cut(s)	1066, 1343
EarI	CTCTTC	2 cut(s)	1066, 1343
Eco130I	CCWWGG	1 cut(s)	1114
Eco31I	GGTCTC	1 cut(s)	1260
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	1022
Eco57I	CTGAAG	2 cut(s)	262, 1047
EcoO109I	RGGNCCY	1 cut(s)	1295
EcoRII	CCWGG	5 cut(s)	358, 580, 601, 1198, 1222
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	1114
EcoT22I	ATGCAT	1 cut(s)	1190
ErhI	CCWWGG	1 cut(s)	1114
FaeI	CATG	4 cut(s)	388, 1107, 1118, 1188
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	2 cut(s)	341, 843
FatI	CATG	4 cut(s)	384, 1103, 1114, 1184
FauI	CCCGC	1 cut(s)	1273
Fnu4HI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
FokI	GGATG	3 cut(s)	755, 1077, 1113
Fsp4HI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
FspBI	CTAG	1 cut(s)	1218
GlaI	GCGC	1 cut(s)	1240
GluI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
GsuI	CTGGAG	2 cut(s)	972, 1221
HaeIII	GGCC	5 cut(s)	245, 733, 897, 1179, 1297
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	1241
Hin1II	CATG	4 cut(s)	388, 1107, 1118, 1188
Hin6I	GCGC	1 cut(s)	1239
HinP1I	GCGC	1 cut(s)	1239
HindIII	AAGCTT	1 cut(s)	804
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	6 cut(s)	23, 704, 990, 1065, 1183, 1254
Hpy166II	GTNNAC	3 cut(s)	959, 1057, 1334
Hpy188I	TCNGA	6 cut(s)	167, 281, 439, 548, 864, 935
Hpy188III	TCNNGA	3 cut(s)	105, 196, 299
Hpy8I	GTNNAC	3 cut(s)	959, 1057, 1334
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	212, 946, 993, 1080
HpyCH4III	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	8 cut(s)	25, 388, 401, 724, 754, 884, 1019, 1188
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 37, 144, 242, 631, 703, 730, 1185, 1245
HpyF3I	CTNAG	4 cut(s)	254, 710, 861, 1007
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	4 cut(s)	388, 1107, 1118, 1188
HspAI	GCGC	1 cut(s)	1239
Kzo9I	GATC	2 cut(s)	189, 198
LmnI	GCTCC	5 cut(s)	703, 997, 1051, 1139, 1201
Lsp1109I	GCAGC	5 cut(s)	43, 46, 49, 598, 718
LweI	GCATC	7 cut(s)	98, 223, 410, 430, 545, 733, 1197
MaeI	CTAG	1 cut(s)	1218
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	2 cut(s)	191, 200
MbiI	CCGCTC	1 cut(s)	1196
MboI	GATC	2 cut(s)	189, 198
MboII	GAAGA	7 cut(s)	63, 66, 69, 142, 184, 1053, 1330
MflI	RGATCY	2 cut(s)	189, 198
MluCI	AATT	4 cut(s)	323, 661, 685, 867
MlyI	GAGTC	3 cut(s)	61, 1138, 1329
MmeI	TCCRAC	2 cut(s)	1001, 1073
Mph1103I	ATGCAT	1 cut(s)	1190
MseI	TTAA	5 cut(s)	249, 473, 510, 645, 1154
MspA1I	CMGCKG	1 cut(s)	709
MspCI	CTTAAG	2 cut(s)	472, 509
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	6 cut(s)	187, 360, 582, 603, 1200, 1224
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	5 cut(s)	360, 582, 603, 1200, 1224
MwoI	GCNNNNNNNGC	9 cut(s)	31, 37, 144, 242, 631, 703, 730, 1185, 1245
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	1114
NdeII	GATC	2 cut(s)	189, 198
NlaIII	CATG	4 cut(s)	388, 1107, 1118, 1188
NlaIV	GGNNCC	2 cut(s)	200, 1180
NmeAIII	GCCGAG	2 cut(s)	187, 873
NsiI	ATGCAT	1 cut(s)	1190
NspI	RCATGY	1 cut(s)	1188
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	8 cut(s)	68, 120, 160, 568, 588, 598, 637, 785
PfoI	TCCNGGA	2 cut(s)	185, 1198
PkrI	GCNGC	5 cut(s)	33, 36, 39, 613, 708
PleI	GAGTC	3 cut(s)	60, 1138, 1329
PpsI	GAGTC	3 cut(s)	60, 1138, 1329
Psp1406I	AACGTT	1 cut(s)	542
Psp6I	CCWGG	5 cut(s)	358, 580, 601, 1198, 1222
PspGI	CCWGG	5 cut(s)	358, 580, 601, 1198, 1222
PspN4I	GGNNCC	2 cut(s)	200, 1180
PspPI	GGNCC	3 cut(s)	1022, 1178, 1295
PstI	CTGCAG	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	189, 198
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	364, 958
RsaNI	GTAC	2 cut(s)	363, 957
SaqAI	TTAA	5 cut(s)	249, 473, 510, 645, 1154
SatI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
Sau3AI	GATC	2 cut(s)	189, 198
Sau96I	GGNCC	3 cut(s)	1022, 1178, 1295
SchI	GAGTC	3 cut(s)	61, 1138, 1329
ScrFI	CCNGG	6 cut(s)	187, 360, 582, 603, 1200, 1224
SfaNI	GCATC	7 cut(s)	98, 223, 410, 430, 545, 733, 1197
SfcI	CTRYAG	2 cut(s)	780, 1017
SinI	GGWCC	1 cut(s)	1022
SmlI	CTYRAG	4 cut(s)	472, 509, 1171, 1249
SmoI	CTYRAG	4 cut(s)	472, 509, 1171, 1249
Sse9I	AATT	4 cut(s)	323, 661, 685, 867
SsiI	CCGC	4 cut(s)	632, 1194, 1266, 1289
SspMI	CTAG	1 cut(s)	1218
StyD4I	CCNGG	6 cut(s)	185, 358, 580, 601, 1198, 1222
StyI	CCWWGG	1 cut(s)	1114
TaaI	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	219, 231, 298
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	4 cut(s)	323, 661, 685, 867
TfiI	GAWTC	8 cut(s)	68, 120, 160, 568, 588, 598, 637, 785
Tru1I	TTAA	5 cut(s)	249, 473, 510, 645, 1154
Tru9I	TTAA	5 cut(s)	249, 473, 510, 645, 1154
TscAI	CASTG	3 cut(s)	262, 471, 598
TseI	GCWGC	5 cut(s)	31, 34, 37, 611, 706
TspDTI	ATGAA	2 cut(s)	1330, 1337
TspGWI	ACGGA	3 cut(s)	132, 205, 898
TspRI	CASTG	3 cut(s)	262, 471, 598
Vha464I	CTTAAG	2 cut(s)	472, 509
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	1188
XspI	CTAG	1 cut(s)	1218
Zsp2I	ATGCAT	1 cut(s)	1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.