Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

41439481 .. 41444824

Gene Structure 5344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGGGAAAGGTGAGAAAAGCCTGCACCAGCAGCAGCAGCACAGCCACCAGAGTCATCAACCCCACGATTCTTCTTCTTCTGGGTTCGTCTGTCCTCAATGTTCCAGATGCTTCAACGGAATCGCCCACCAGTTCAGCTTTCGATGCGTCTTCGTTTTGATTCTCGGATTATCGGTTTTCCTCTCCGGGATCTTCTGGATCCTTCCTCGACATTCCGTCGATAATGGGTTCGACGCCAAAGAGGCCATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATATGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATGCCGTGAATGTTCCAATACTTCCAGTGTCCTTAAGTGTGCTGAAATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGACAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCAATCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATCTATGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCTGCAAGAAATCTCGGCCTTGATAACTCCGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTTTACCATGGTTCTACTCATCCAAGCTCCTCGCCGACTCCTCATCTTAACCCTAGTATCCCCCCTACTTATGCACCTAGAACTTCGCCTTACTCACCTTCTATGAGTCCCTCATCTCAAGTGGCCCCACATGCATCACCTGCTCCTGGAGTGTCCTATGCTTCTAGTCCAGGCTACAAGAAAAGCGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTACTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

51.06

Weight (kDa)

8.94

Isoelectric Point (pI)

58.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	92 - 183	2.6e-29	Domain of unknown function (DUF7036)
DUF7036	PF23041	216 - 306	1.2e-20	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1255
Acc36I	ACCTGC	1 cut(s)	1255
AciI	CCGC	3 cut(s)	632, 1320, 1343
AclI	AACGTT	1 cut(s)	542
AclWI	GGATC	3 cut(s)	193, 197, 206
AcsI	RAATTY	1 cut(s)	685
AcuI	CTGAAG	2 cut(s)	262, 1047
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	364, 958
AfiI	CCNNNNNNNGG	2 cut(s)	317, 1253
AflII	CTTAAG	2 cut(s)	472, 509
AgsI	TTSAA	8 cut(s)	115, 618, 666, 777, 797, 803, 850, 952
AhdI	GACNNNNNGTC	1 cut(s)	215
AjnI	CCWGG	5 cut(s)	358, 580, 601, 1252, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
Alw26I	GTCTC	1 cut(s)	1314
AlwI	GGATC	3 cut(s)	193, 197, 206
AlwNI	CAGNNNCTG	1 cut(s)	640
AoxI	GGCC	5 cut(s)	243, 731, 895, 1230, 1349
ApeKI	GCWGC	5 cut(s)	31, 34, 37, 611, 706
ApoI	RAATTY	1 cut(s)	685
AspLEI	GCGC	1 cut(s)	1295
AspS9I	GGNCC	3 cut(s)	1022, 1231, 1349
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	7 cut(s)	23, 704, 990, 1065, 1194, 1236, 1308
AvaII	GGWCC	1 cut(s)	1022
BaeI	ACNNNNGTAYC	4 cut(s)	354, 387, 1147, 1180
BamHI	GGATCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BccI	CCATC	4 cut(s)	1003, 1033, 1321, 1339
BceAI	ACGGC	2 cut(s)	428, 549
BciT130I	CCWGG	5 cut(s)	360, 582, 603, 1254, 1278
BciVI	GTATCC	2 cut(s)	588, 1175
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	1314
BfaI	CTAG	3 cut(s)	1161, 1185, 1272
BfmI	CTRYAG	2 cut(s)	780, 1017
BfrI	CTTAAG	2 cut(s)	472, 509
BfuAI	ACCTGC	1 cut(s)	1255
BfuI	GTATCC	2 cut(s)	588, 1175
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
BlsI	GCNGC	5 cut(s)	33, 36, 39, 613, 708
Bme1390I	CCNGG	6 cut(s)	187, 360, 582, 603, 1254, 1278
Bme18I	GGWCC	1 cut(s)	1022
BmeRI	GACNNNNNGTC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	1022, 1231, 1349
BmiI	GGNNCC	2 cut(s)	200, 1233
BmrFI	CCNGG	6 cut(s)	187, 360, 582, 603, 1254, 1278
BmrI	ACTGGG	2 cut(s)	785, 1385
BmsI	GCATC	7 cut(s)	98, 134, 410, 430, 545, 733, 1250
BmuI	ACTGGG	2 cut(s)	785, 1385
BpiI	GAAGAC	1 cut(s)	142
BpmI	CTGGAG	2 cut(s)	972, 1275
Bpu10I	CCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	1209, 1324
BpuMI	CCSGG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	1314
BsaJI	CCNNGG	4 cut(s)	358, 581, 602, 1114
BsaXI	ACNNNNNCTCC	6 cut(s)	862, 892, 970, 1000, 1078, 1108
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 1253
Bse1I	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1380
BseBI	CCWGG	5 cut(s)	360, 582, 603, 1254, 1278
BseDI	CCNNGG	4 cut(s)	358, 581, 602, 1114
BseGI	GGATG	3 cut(s)	748, 1090, 1126
BseLI	CCNNNNNNNGG	2 cut(s)	317, 1253
BseMII	CTCAG	3 cut(s)	268, 701, 875
BseNI	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1380
BseRI	GAGGAG	3 cut(s)	1086, 1126, 1137
BseXI	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	5 cut(s)	245, 733, 897, 1232, 1351
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	3 cut(s)	341, 843, 1200
BslI	CCNNNNNNNGG	2 cut(s)	317, 1253
BsmAI	GTCTC	1 cut(s)	1314
BsmFI	GGGAC	3 cut(s)	341, 843, 1200
BsnI	GGCC	5 cut(s)	245, 733, 897, 1232, 1351
Bso31I	GGTCTC	1 cut(s)	1314
Bsp143I	GATC	2 cut(s)	189, 198
Bsp19I	CCATGG	1 cut(s)	1114
BspACI	CCGC	3 cut(s)	632, 1320, 1343
BspANI	GGCC	5 cut(s)	245, 733, 897, 1232, 1351
BspCNI	CTCAG	3 cut(s)	267, 702, 874
BspLI	GGNNCC	2 cut(s)	200, 1233
BspMAI	CTGCAG	1 cut(s)	1021
BspMI	ACCTGC	1 cut(s)	1255
BspPI	GGATC	3 cut(s)	193, 197, 206
BspTI	CTTAAG	2 cut(s)	472, 509
BspTNI	GGTCTC	1 cut(s)	1314
BsrI	ACTGG	7 cut(s)	130, 288, 293, 413, 464, 791, 1380
BssECI	CCNNGG	4 cut(s)	358, 581, 602, 1114
BssMI	GATC	2 cut(s)	189, 198
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	1114
Bst2UI	CCWGG	5 cut(s)	360, 582, 603, 1254, 1278
Bst4CI	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
Bst6I	CTCTTC	2 cut(s)	1066, 1397
BstACI	GRCGYC	1 cut(s)	234
BstAFI	CTTAAG	2 cut(s)	472, 509
BstAPI	GCANNNNNTGC	1 cut(s)	1247
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	254, 710, 861, 1007
BstDSI	CCRYGG	1 cut(s)	1114
BstF5I	GGATG	3 cut(s)	748, 1090, 1126
BstHHI	GCGC	1 cut(s)	1295
BstKTI	GATC	2 cut(s)	192, 201
BstMAI	GTCTC	1 cut(s)	1314
BstMBI	GATC	2 cut(s)	189, 198
BstNI	CCWGG	5 cut(s)	360, 582, 603, 1254, 1278
BstNSI	RCATGY	1 cut(s)	1241
BstSCI	CCNGG	6 cut(s)	185, 358, 580, 601, 1252, 1276
BstSFI	CTRYAG	2 cut(s)	780, 1017
BstV1I	GCAGC	5 cut(s)	43, 46, 49, 598, 718
BstV2I	GAAGAC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	189, 198
BstYI	RGATCY	2 cut(s)	189, 198
BsuI	GTATCC	2 cut(s)	588, 1175
BsuRI	GGCC	5 cut(s)	245, 733, 897, 1232, 1351
BtgI	CCRYGG	1 cut(s)	1114
BtsCI	GGATG	3 cut(s)	748, 1090, 1126
BtsIMutI	CAGTG	3 cut(s)	262, 471, 591
BveI	ACCTGC	1 cut(s)	1255
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	640
CfoI	GCGC	1 cut(s)	1295
Cfr13I	GGNCC	3 cut(s)	1022, 1231, 1349
CseI	GACGC	2 cut(s)	136, 242
Csp6I	GTAC	2 cut(s)	363, 957
CspCI	CAANNNNNGTGG	2 cut(s)	828, 863
CviAII	CATG	4 cut(s)	385, 1104, 1115, 1238
CviQI	GTAC	2 cut(s)	363, 957
DdeI	CTNAG	4 cut(s)	254, 710, 861, 1007
DpnI	GATC	2 cut(s)	191, 200
DpnII	GATC	2 cut(s)	189, 198
DriI	GACNNNNNGTC	1 cut(s)	215
Eam1104I	CTCTTC	2 cut(s)	1066, 1397
Eam1105I	GACNNNNNGTC	1 cut(s)	215
EarI	CTCTTC	2 cut(s)	1066, 1397
Eco130I	CCWWGG	1 cut(s)	1114
Eco31I	GGTCTC	1 cut(s)	1314
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	1022
Eco57I	CTGAAG	2 cut(s)	262, 1047
EcoO109I	RGGNCCY	1 cut(s)	1349
EcoRII	CCWGG	5 cut(s)	358, 580, 601, 1252, 1276
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	1114
EcoT22I	ATGCAT	1 cut(s)	1243
ErhI	CCWWGG	1 cut(s)	1114
FaeI	CATG	4 cut(s)	388, 1107, 1118, 1241
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	3 cut(s)	341, 843, 1200
FatI	CATG	4 cut(s)	384, 1103, 1114, 1237
FauI	CCCGC	1 cut(s)	1327
Fnu4HI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
FokI	GGATG	3 cut(s)	755, 1077, 1113
Fsp4HI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
FspBI	CTAG	3 cut(s)	1161, 1185, 1272
GlaI	GCGC	1 cut(s)	1294
GluI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
GsuI	CTGGAG	2 cut(s)	972, 1275
HaeIII	GGCC	5 cut(s)	245, 733, 897, 1232, 1351
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	136, 242
HhaI	GCGC	1 cut(s)	1295
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	4 cut(s)	388, 1107, 1118, 1241
Hin6I	GCGC	1 cut(s)	1293
HinP1I	GCGC	1 cut(s)	1293
HindIII	AAGCTT	1 cut(s)	804
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	7 cut(s)	23, 704, 990, 1065, 1194, 1236, 1308
Hpy166II	GTNNAC	3 cut(s)	959, 1057, 1388
Hpy188I	TCNGA	6 cut(s)	167, 281, 439, 548, 864, 935
Hpy188III	TCNNGA	3 cut(s)	105, 196, 299
Hpy8I	GTNNAC	3 cut(s)	959, 1057, 1388
Hpy99I	CGWCG	2 cut(s)	221, 236
HpyAV	CCTTC	5 cut(s)	212, 946, 993, 1080, 1215
HpyCH4III	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	9 cut(s)	25, 388, 401, 724, 754, 884, 1019, 1181, 1241
HpyF3I	CTNAG	4 cut(s)	254, 710, 861, 1007
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	388, 1107, 1118, 1241
HspAI	GCGC	1 cut(s)	1293
Kzo9I	GATC	2 cut(s)	189, 198
LmnI	GCTCC	5 cut(s)	703, 997, 1051, 1139, 1255
Lsp1109I	GCAGC	5 cut(s)	43, 46, 49, 598, 718
LweI	GCATC	7 cut(s)	98, 134, 410, 430, 545, 733, 1250
MaeI	CTAG	3 cut(s)	1161, 1185, 1272
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	2 cut(s)	191, 200
MboI	GATC	2 cut(s)	189, 198
MboII	GAAGA	7 cut(s)	63, 66, 69, 142, 184, 1053, 1384
MflI	RGATCY	2 cut(s)	189, 198
MluCI	AATT	4 cut(s)	323, 661, 685, 867
MlyI	GAGTC	4 cut(s)	61, 1138, 1222, 1383
MmeI	TCCRAC	2 cut(s)	1001, 1073
Mph1103I	ATGCAT	1 cut(s)	1243
MseI	TTAA	5 cut(s)	249, 473, 510, 645, 1155
MspA1I	CMGCKG	1 cut(s)	709
MspCI	CTTAAG	2 cut(s)	472, 509
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	6 cut(s)	187, 360, 582, 603, 1254, 1278
MvaI	CCWGG	5 cut(s)	360, 582, 603, 1254, 1278
NciI	CCSGG	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	1114
NdeII	GATC	2 cut(s)	189, 198
NlaIII	CATG	4 cut(s)	388, 1107, 1118, 1241
NlaIV	GGNNCC	2 cut(s)	200, 1233
NmeAIII	GCCGAG	1 cut(s)	873
NsiI	ATGCAT	1 cut(s)	1243
NspI	RCATGY	1 cut(s)	1241
PaqCI	CACCTGC	1 cut(s)	1255
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PfeI	GAWTC	8 cut(s)	68, 120, 160, 568, 588, 598, 637, 785
PfoI	TCCNGGA	2 cut(s)	185, 1252
PkrI	GCNGC	5 cut(s)	33, 36, 39, 613, 708
PleI	GAGTC	4 cut(s)	60, 1138, 1221, 1383
PpsI	GAGTC	4 cut(s)	60, 1138, 1221, 1383
Psp1406I	AACGTT	1 cut(s)	542
Psp6I	CCWGG	5 cut(s)	358, 580, 601, 1252, 1276
PspGI	CCWGG	5 cut(s)	358, 580, 601, 1252, 1276
PspN4I	GGNNCC	2 cut(s)	200, 1233
PspPI	GGNCC	3 cut(s)	1022, 1231, 1349
PstI	CTGCAG	1 cut(s)	1021
PstNI	CAGNNNCTG	1 cut(s)	640
PsuI	RGATCY	2 cut(s)	189, 198
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	364, 958
RsaNI	GTAC	2 cut(s)	363, 957
SaqAI	TTAA	5 cut(s)	249, 473, 510, 645, 1155
SatI	GCNGC	5 cut(s)	32, 35, 38, 612, 707
Sau3AI	GATC	2 cut(s)	189, 198
Sau96I	GGNCC	3 cut(s)	1022, 1231, 1349
SchI	GAGTC	4 cut(s)	61, 1138, 1222, 1383
ScrFI	CCNGG	6 cut(s)	187, 360, 582, 603, 1254, 1278
SfaNI	GCATC	7 cut(s)	98, 134, 410, 430, 545, 733, 1250
SfcI	CTRYAG	2 cut(s)	780, 1017
SinI	GGWCC	1 cut(s)	1022
SmlI	CTYRAG	4 cut(s)	472, 509, 1224, 1303
SmoI	CTYRAG	4 cut(s)	472, 509, 1224, 1303
Sse9I	AATT	4 cut(s)	323, 661, 685, 867
SsiI	CCGC	3 cut(s)	632, 1320, 1343
SspMI	CTAG	3 cut(s)	1161, 1185, 1272
StyD4I	CCNGG	6 cut(s)	185, 358, 580, 601, 1252, 1276
StyI	CCWWGG	1 cut(s)	1114
TaaI	ACNGT	5 cut(s)	265, 398, 595, 855, 1054
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	5 cut(s)	142, 208, 219, 231, 298
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	4 cut(s)	323, 661, 685, 867
TfiI	GAWTC	8 cut(s)	68, 120, 160, 568, 588, 598, 637, 785
Tru1I	TTAA	5 cut(s)	249, 473, 510, 645, 1155
Tru9I	TTAA	5 cut(s)	249, 473, 510, 645, 1155
TscAI	CASTG	3 cut(s)	262, 471, 598
TseI	GCWGC	5 cut(s)	31, 34, 37, 611, 706
TspDTI	ATGAA	2 cut(s)	1384, 1391
TspGWI	ACGGA	3 cut(s)	132, 205, 898
TspRI	CASTG	3 cut(s)	262, 471, 598
Vha464I	CTTAAG	2 cut(s)	472, 509
VpaK11BI	GGWCC	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	685
XceI	RCATGY	1 cut(s)	1241
XspI	CTAG	3 cut(s)	1161, 1185, 1272
Zsp2I	ATGCAT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.