RchiOBHm_Chr7g0222521

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
43991362 .. 43996703
5342 bp
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UTR
Exon/CDS
Intron
PRQ19917

Sequence Viewer

Length: 1413 bp
ATGGGGAAAGGTGAGAAAAGCCTGCAGCAGCAGCAGCACAGCCACCAGAGTGACCAACCCCACGATTCTGCTTCTGGGTTCGTCTGTCCTCAATGTTCCAGATGCTTCAACGGAATCGCCCACCAGTTCAGCTTTCGATGCGTCTTCGTTTTGATTCTCGGGTTCTCGGTTTTTCTCTCCGGGATCTTCTGGATCCTTCCTCGACATTCCGTCGATAATGGGTTCGATGCCAAAGAGGCCATTAAGCTCGGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATACGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATGCCGTGAATGTTCCGATACTTCCAGTGCCCTTAAGTGTGCTGAAATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGGCAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCACTCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATCTATGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCTGCAAGAAATCTCGGCCTTGATAACTCCGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTTTACCATGGTTCTACTCATCCAAGCTCCTCACCGACTCCTCATTTTAACCCTAGTATCCCCCCTCCTTATGCATCTAGAACTTCGCCTTACTCACCTTCTATGAGTCCCTCATCTCAAGTGGCCCCACATGCATCACCCGTGCCCGGAGTGTCCTATGCTTCTAGTCCAGGCTACAAGAAAAGTGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTACTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

470

Amino Acids

50.86

Weight (kDa)

8.83

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 90 - 181 1.3e-28 Domain of unknown function (DUF7036)
DUF7036 PF23041 214 - 304 1.2e-20 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AciI CCGC 3 cut(s) 626, 1314, 1337
AclI AACGTT 1 cut(s) 536
AclWI GGATC 3 cut(s) 187, 191, 200
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 2 cut(s) 256, 1041
AfaI GTAC 2 cut(s) 358, 952
AfiI CCNNNNNNNGG 2 cut(s) 311, 1247
AflII CTTAAG 2 cut(s) 466, 503
AgsI TTSAA 7 cut(s) 109, 660, 771, 791, 797, 844, 946
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 4 cut(s) 352, 574, 595, 1270
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AleI CACNNNNGTG 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 1308
AlwI GGATC 3 cut(s) 187, 191, 200
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 5 cut(s) 237, 725, 889, 1224, 1343
ApeKI GCWGC 6 cut(s) 25, 28, 31, 34, 605, 700
ApoI RAATTY 1 cut(s) 679
AspS9I GGNCC 3 cut(s) 1016, 1225, 1343
AsuC2I CCSGG 2 cut(s) 181, 1248
AsuHPI GGTGA 8 cut(s) 23, 698, 984, 1059, 1125, 1188, 1230, 1302
AvaI CYCGRG 1 cut(s) 158
AvaII GGWCC 1 cut(s) 1016
BaeGI GKGCMC 2 cut(s) 465, 1248
BaeI ACNNNNGTAYC 4 cut(s) 348, 381, 1141, 1174
BamHI GGATCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 6 cut(s) 37, 40, 43, 46, 592, 712
BccI CCATC 4 cut(s) 997, 1027, 1315, 1333
BceAI ACGGC 2 cut(s) 422, 543
BciT130I CCWGG 4 cut(s) 354, 576, 597, 1272
BciVI GTATCC 2 cut(s) 582, 1169
BcnI CCSGG 2 cut(s) 181, 1248
BcoDI GTCTC 1 cut(s) 1308
BfaI CTAG 3 cut(s) 1155, 1179, 1266
BfmI CTRYAG 3 cut(s) 23, 774, 1011
BfrI CTTAAG 2 cut(s) 466, 503
BfuI GTATCC 2 cut(s) 582, 1169
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 6 cut(s) 26, 29, 32, 35, 606, 701
BlsI GCNGC 6 cut(s) 27, 30, 33, 36, 607, 702
Bme1390I CCNGG 6 cut(s) 181, 354, 576, 597, 1248, 1272
Bme18I GGWCC 1 cut(s) 1016
BmeRI GACNNNNNGTC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 158
BmgT120I GGNCC 3 cut(s) 1016, 1225, 1343
BmiI GGNNCC 3 cut(s) 194, 253, 1227
BmrFI CCNGG 6 cut(s) 181, 354, 576, 597, 1248, 1272
BmrI ACTGGG 2 cut(s) 779, 1379
BmsI GCATC 9 cut(s) 92, 128, 217, 404, 424, 539, 727, 1184, 1244
BmuI ACTGGG 2 cut(s) 779, 1379
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 1203, 1318
BpuMI CCSGG 2 cut(s) 181, 1248
BsaI GGTCTC 1 cut(s) 1308
BsaJI CCNNGG 4 cut(s) 352, 575, 596, 1108
BsaXI ACNNNNNCTCC 6 cut(s) 856, 886, 964, 994, 1072, 1102
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 1247
Bse1I ACTGG 7 cut(s) 124, 282, 287, 407, 458, 785, 1374
BseBI CCWGG 4 cut(s) 354, 576, 597, 1272
BseDI CCNNGG 4 cut(s) 352, 575, 596, 1108
BseGI GGATG 3 cut(s) 742, 1084, 1120
BseLI CCNNNNNNNGG 2 cut(s) 311, 1247
BseMII CTCAG 2 cut(s) 695, 869
BseNI ACTGG 7 cut(s) 124, 282, 287, 407, 458, 785, 1374
BseRI GAGGAG 3 cut(s) 1080, 1120, 1131
BseSI GKGCMC 2 cut(s) 465, 1248
BseXI GCAGC 6 cut(s) 37, 40, 43, 46, 592, 712
BshFI GGCC 5 cut(s) 239, 727, 891, 1226, 1345
BshNI GGYRCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 180, 1248
BslFI GGGAC 3 cut(s) 335, 837, 1194
BslI CCNNNNNNNGG 2 cut(s) 311, 1247
BsmAI GTCTC 1 cut(s) 1308
BsmFI GGGAC 3 cut(s) 335, 837, 1194
BsnI GGCC 5 cut(s) 239, 727, 891, 1226, 1345
Bso31I GGTCTC 1 cut(s) 1308
BsoBI CYCGRG 1 cut(s) 158
Bsp1286I GDGCHC 2 cut(s) 465, 1248
Bsp143I GATC 2 cut(s) 183, 192
Bsp19I CCATGG 1 cut(s) 1108
BspACI CCGC 3 cut(s) 626, 1314, 1337
BspANI GGCC 5 cut(s) 239, 727, 891, 1226, 1345
BspCNI CTCAG 2 cut(s) 696, 868
BspLI GGNNCC 3 cut(s) 194, 253, 1227
BspMAI CTGCAG 2 cut(s) 27, 1015
BspPI GGATC 3 cut(s) 187, 191, 200
BspT107I GGYRCC 1 cut(s) 251
BspTI CTTAAG 2 cut(s) 466, 503
BspTNI GGTCTC 1 cut(s) 1308
BsrI ACTGG 7 cut(s) 124, 282, 287, 407, 458, 785, 1374
BssECI CCNNGG 4 cut(s) 352, 575, 596, 1108
BssMI GATC 2 cut(s) 183, 192
BssT1I CCWWGG 1 cut(s) 1108
Bst2UI CCWGG 4 cut(s) 354, 576, 597, 1272
Bst4CI ACNGT 5 cut(s) 259, 392, 589, 849, 1048
Bst6I CTCTTC 2 cut(s) 1060, 1391
BstAFI CTTAAG 2 cut(s) 466, 503
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 3 cut(s) 704, 855, 1001
BstDSI CCRYGG 1 cut(s) 1108
BstF5I GGATG 3 cut(s) 742, 1084, 1120
BstKTI GATC 2 cut(s) 186, 195
BstMAI GTCTC 1 cut(s) 1308
BstMBI GATC 2 cut(s) 183, 192
BstMWI GCNNNNNNNGC 8 cut(s) 31, 34, 138, 236, 625, 697, 724, 1232
BstNI CCWGG 4 cut(s) 354, 576, 597, 1272
BstNSI RCATGY 1 cut(s) 1235
BstSCI CCNGG 6 cut(s) 179, 352, 574, 595, 1246, 1270
BstSFI CTRYAG 3 cut(s) 23, 774, 1011
BstSLI GKGCMC 2 cut(s) 465, 1248
BstV1I GCAGC 6 cut(s) 37, 40, 43, 46, 592, 712
BstV2I GAAGAC 1 cut(s) 136
BstX2I RGATCY 2 cut(s) 183, 192
BstYI RGATCY 2 cut(s) 183, 192
BsuI GTATCC 2 cut(s) 582, 1169
BsuRI GGCC 5 cut(s) 239, 727, 891, 1226, 1345
BtgI CCRYGG 1 cut(s) 1108
BtsCI GGATG 3 cut(s) 742, 1084, 1120
BtsIMutI CAGTG 2 cut(s) 465, 585
Cac8I GCNNGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 1016, 1225, 1343
CseI GACGC 1 cut(s) 130
Csp6I GTAC 2 cut(s) 357, 951
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 4 cut(s) 379, 1098, 1109, 1232
CviQI GTAC 2 cut(s) 357, 951
DdeI CTNAG 3 cut(s) 704, 855, 1001
DpnI GATC 2 cut(s) 185, 194
DpnII GATC 2 cut(s) 183, 192
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 2 cut(s) 1060, 1391
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 2 cut(s) 1060, 1391
Eco130I CCWWGG 1 cut(s) 1108
Eco31I GGTCTC 1 cut(s) 1308
Eco32I GATATC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 1016
Eco57I CTGAAG 2 cut(s) 256, 1041
Eco88I CYCGRG 1 cut(s) 158
EcoO109I RGGNCCY 1 cut(s) 1343
EcoRII CCWGG 4 cut(s) 352, 574, 595, 1270
EcoRV GATATC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 1108
EcoT22I ATGCAT 2 cut(s) 1177, 1237
ErhI CCWWGG 1 cut(s) 1108
FaeI CATG 4 cut(s) 382, 1101, 1112, 1235
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 3 cut(s) 335, 837, 1194
FatI CATG 4 cut(s) 378, 1097, 1108, 1231
FauI CCCGC 1 cut(s) 1321
Fnu4HI GCNGC 6 cut(s) 26, 29, 32, 35, 606, 701
FokI GGATG 3 cut(s) 749, 1071, 1107
Fsp4HI GCNGC 6 cut(s) 26, 29, 32, 35, 606, 701
FspBI CTAG 3 cut(s) 1155, 1179, 1266
GluI GCNGC 6 cut(s) 26, 29, 32, 35, 606, 701
GsuI CTGGAG 1 cut(s) 966
HaeIII GGCC 5 cut(s) 239, 727, 891, 1226, 1345
HapII CCGG 2 cut(s) 180, 1248
HgaI GACGC 1 cut(s) 130
Hin1II CATG 4 cut(s) 382, 1101, 1112, 1235
HindIII AAGCTT 1 cut(s) 798
HpaII CCGG 2 cut(s) 180, 1248
HphI GGTGA 8 cut(s) 23, 698, 984, 1059, 1125, 1188, 1230, 1302
Hpy166II GTNNAC 3 cut(s) 953, 1051, 1382
Hpy188I TCNGA 5 cut(s) 275, 433, 450, 858, 929
Hpy188III TCNNGA 4 cut(s) 99, 190, 293, 1179
Hpy8I GTNNAC 3 cut(s) 953, 1051, 1382
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 5 cut(s) 206, 940, 987, 1074, 1209
HpyCH4III ACNGT 5 cut(s) 259, 392, 589, 849, 1048
HpyCH4IV ACGT 1 cut(s) 536
HpyF10VI GCNNNNNNNGC 8 cut(s) 31, 34, 138, 236, 625, 697, 724, 1232
HpyF3I CTNAG 3 cut(s) 704, 855, 1001
HpySE526I ACGT 1 cut(s) 536
Hsp92II CATG 4 cut(s) 382, 1101, 1112, 1235
Kzo9I GATC 2 cut(s) 183, 192
LmnI GCTCC 4 cut(s) 697, 991, 1045, 1133
Lsp1109I GCAGC 6 cut(s) 37, 40, 43, 46, 592, 712
LweI GCATC 9 cut(s) 92, 128, 217, 404, 424, 539, 727, 1184, 1244
MaeI CTAG 3 cut(s) 1155, 1179, 1266
MaeII ACGT 1 cut(s) 536
MaeIII GTNAC 2 cut(s) 50, 751
MalI GATC 2 cut(s) 185, 194
MboI GATC 2 cut(s) 183, 192
MboII GAAGA 4 cut(s) 136, 178, 1047, 1378
MflI RGATCY 2 cut(s) 183, 192
MhlI GDGCHC 2 cut(s) 465, 1248
MluCI AATT 4 cut(s) 317, 655, 679, 861
MlyI GAGTC 3 cut(s) 1132, 1216, 1377
MmeI TCCRAC 2 cut(s) 995, 1067
Mph1103I ATGCAT 2 cut(s) 1177, 1237
MseI TTAA 5 cut(s) 243, 467, 504, 639, 1149
MslI CAYNNNNRTG 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 703
MspCI CTTAAG 2 cut(s) 466, 503
MspI CCGG 2 cut(s) 180, 1248
MspR9I CCNGG 6 cut(s) 181, 354, 576, 597, 1248, 1272
MvaI CCWGG 4 cut(s) 354, 576, 597, 1272
MwoI GCNNNNNNNGC 8 cut(s) 31, 34, 138, 236, 625, 697, 724, 1232
NciI CCSGG 2 cut(s) 181, 1248
NcoI CCATGG 1 cut(s) 1108
NdeII GATC 2 cut(s) 183, 192
NlaIII CATG 4 cut(s) 382, 1101, 1112, 1235
NlaIV GGNNCC 3 cut(s) 194, 253, 1227
NmeAIII GCCGAG 1 cut(s) 867
NmuCI GTSAC 1 cut(s) 50
NsiI ATGCAT 2 cut(s) 1177, 1237
NspI RCATGY 1 cut(s) 1235
OliI CACNNNNGTG 1 cut(s) 48
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PfeI GAWTC 8 cut(s) 65, 114, 154, 562, 582, 592, 631, 779
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 6 cut(s) 27, 30, 33, 36, 607, 702
PleI GAGTC 3 cut(s) 1132, 1215, 1377
PpsI GAGTC 3 cut(s) 1132, 1215, 1377
Psp1406I AACGTT 1 cut(s) 536
Psp6I CCWGG 4 cut(s) 352, 574, 595, 1270
PspGI CCWGG 4 cut(s) 352, 574, 595, 1270
PspN4I GGNNCC 3 cut(s) 194, 253, 1227
PspPI GGNCC 3 cut(s) 1016, 1225, 1343
PstI CTGCAG 2 cut(s) 27, 1015
PstNI CAGNNNCTG 1 cut(s) 634
PsuI RGATCY 2 cut(s) 183, 192
PvuII CAGCTG 1 cut(s) 703
RsaI GTAC 2 cut(s) 358, 952
RsaNI GTAC 2 cut(s) 357, 951
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 5 cut(s) 243, 467, 504, 639, 1149
SatI GCNGC 6 cut(s) 26, 29, 32, 35, 606, 701
Sau3AI GATC 2 cut(s) 183, 192
Sau96I GGNCC 3 cut(s) 1016, 1225, 1343
SchI GAGTC 3 cut(s) 1132, 1216, 1377
ScrFI CCNGG 6 cut(s) 181, 354, 576, 597, 1248, 1272
SduI GDGCHC 2 cut(s) 465, 1248
SfaNI GCATC 9 cut(s) 92, 128, 217, 404, 424, 539, 727, 1184, 1244
SfcI CTRYAG 3 cut(s) 23, 774, 1011
SinI GGWCC 1 cut(s) 1016
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 4 cut(s) 466, 503, 1218, 1297
SmoI CTYRAG 4 cut(s) 466, 503, 1218, 1297
Sse9I AATT 4 cut(s) 317, 655, 679, 861
SsiI CCGC 3 cut(s) 626, 1314, 1337
SspMI CTAG 3 cut(s) 1155, 1179, 1266
StyD4I CCNGG 6 cut(s) 179, 352, 574, 595, 1246, 1270
StyI CCWWGG 1 cut(s) 1108
TaaI ACNGT 5 cut(s) 259, 392, 589, 849, 1048
TaiI ACGT 1 cut(s) 539
TaqI TCGA 5 cut(s) 136, 202, 213, 225, 292
TaqII GACCGA 1 cut(s) 302
TasI AATT 4 cut(s) 317, 655, 679, 861
TfiI GAWTC 8 cut(s) 65, 114, 154, 562, 582, 592, 631, 779
Tru1I TTAA 5 cut(s) 243, 467, 504, 639, 1149
Tru9I TTAA 5 cut(s) 243, 467, 504, 639, 1149
TscAI CASTG 2 cut(s) 465, 592
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 6 cut(s) 25, 28, 31, 34, 605, 700
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 1378, 1385
TspGWI ACGGA 3 cut(s) 126, 199, 892
TspRI CASTG 2 cut(s) 465, 592
Vha464I CTTAAG 2 cut(s) 466, 503
VpaK11BI GGWCC 1 cut(s) 1016
XapI RAATTY 1 cut(s) 679
XbaI TCTAGA 1 cut(s) 1178
XceI RCATGY 1 cut(s) 1235
XspI CTAG 3 cut(s) 1155, 1179, 1266
Zsp2I ATGCAT 2 cut(s) 1177, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.