BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G10790 |
| fragaria_vesca | FvH4_5g29560 FvH4_5g29560 |
| malus_domestica | MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1 |
| prunus_persica | Prupe.1G567800_v2.0.a1 |
| pyrus_communis | pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440 |
| rosa_chinensis | RchiOBHm_Chr7g0222521 |
| rosa_laevigata | RLG00000002048 |
| rosa_multiflora | Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00236690 |
| rosa_rugosa | Rorug07G0210200 |
| rosa_samantha | Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600 |
| rosa_wichuraiana | Rw7G029710 Rw7G030030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 251 |
| AciI | CCGC | 3 cut(s) | 626, 1314, 1337 |
| AclI | AACGTT | 1 cut(s) | 536 |
| AclWI | GGATC | 3 cut(s) | 187, 191, 200 |
| AcsI | RAATTY | 1 cut(s) | 679 |
| AcuI | CTGAAG | 2 cut(s) | 256, 1041 |
| AfaI | GTAC | 2 cut(s) | 358, 952 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 311, 1247 |
| AflII | CTTAAG | 2 cut(s) | 466, 503 |
| AgsI | TTSAA | 7 cut(s) | 109, 660, 771, 791, 797, 844, 946 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 209 |
| AjnI | CCWGG | 4 cut(s) | 352, 574, 595, 1270 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 470, 502 |
| AleI | CACNNNNGTG | 1 cut(s) | 48 |
| Alw26I | GTCTC | 1 cut(s) | 1308 |
| AlwI | GGATC | 3 cut(s) | 187, 191, 200 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 634 |
| Ama87I | CYCGRG | 1 cut(s) | 158 |
| AoxI | GGCC | 5 cut(s) | 237, 725, 889, 1224, 1343 |
| ApeKI | GCWGC | 6 cut(s) | 25, 28, 31, 34, 605, 700 |
| ApoI | RAATTY | 1 cut(s) | 679 |
| AspS9I | GGNCC | 3 cut(s) | 1016, 1225, 1343 |
| AsuC2I | CCSGG | 2 cut(s) | 181, 1248 |
| AsuHPI | GGTGA | 8 cut(s) | 23, 698, 984, 1059, 1125, 1188, 1230, 1302 |
| AvaI | CYCGRG | 1 cut(s) | 158 |
| AvaII | GGWCC | 1 cut(s) | 1016 |
| BaeGI | GKGCMC | 2 cut(s) | 465, 1248 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 348, 381, 1141, 1174 |
| BamHI | GGATCC | 1 cut(s) | 192 |
| BanI | GGYRCC | 1 cut(s) | 251 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| BbvCI | CCTCAGC | 1 cut(s) | 704 |
| BbvI | GCAGC | 6 cut(s) | 37, 40, 43, 46, 592, 712 |
| BccI | CCATC | 4 cut(s) | 997, 1027, 1315, 1333 |
| BceAI | ACGGC | 2 cut(s) | 422, 543 |
| BciT130I | CCWGG | 4 cut(s) | 354, 576, 597, 1272 |
| BciVI | GTATCC | 2 cut(s) | 582, 1169 |
| BcnI | CCSGG | 2 cut(s) | 181, 1248 |
| BcoDI | GTCTC | 1 cut(s) | 1308 |
| BfaI | CTAG | 3 cut(s) | 1155, 1179, 1266 |
| BfmI | CTRYAG | 3 cut(s) | 23, 774, 1011 |
| BfrI | CTTAAG | 2 cut(s) | 466, 503 |
| BfuI | GTATCC | 2 cut(s) | 582, 1169 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 236 |
| BisI | GCNGC | 6 cut(s) | 26, 29, 32, 35, 606, 701 |
| BlsI | GCNGC | 6 cut(s) | 27, 30, 33, 36, 607, 702 |
| Bme1390I | CCNGG | 6 cut(s) | 181, 354, 576, 597, 1248, 1272 |
| Bme18I | GGWCC | 1 cut(s) | 1016 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 209 |
| BmeT110I | CYCGRG | 1 cut(s) | 158 |
| BmgT120I | GGNCC | 3 cut(s) | 1016, 1225, 1343 |
| BmiI | GGNNCC | 3 cut(s) | 194, 253, 1227 |
| BmrFI | CCNGG | 6 cut(s) | 181, 354, 576, 597, 1248, 1272 |
| BmrI | ACTGGG | 2 cut(s) | 779, 1379 |
| BmsI | GCATC | 9 cut(s) | 92, 128, 217, 404, 424, 539, 727, 1184, 1244 |
| BmuI | ACTGGG | 2 cut(s) | 779, 1379 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| BpmI | CTGGAG | 1 cut(s) | 966 |
| Bpu10I | CCTNAGC | 1 cut(s) | 704 |
| BpuEI | CTTGAG | 2 cut(s) | 1203, 1318 |
| BpuMI | CCSGG | 2 cut(s) | 181, 1248 |
| BsaI | GGTCTC | 1 cut(s) | 1308 |
| BsaJI | CCNNGG | 4 cut(s) | 352, 575, 596, 1108 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 856, 886, 964, 994, 1072, 1102 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 311, 1247 |
| Bse1I | ACTGG | 7 cut(s) | 124, 282, 287, 407, 458, 785, 1374 |
| BseBI | CCWGG | 4 cut(s) | 354, 576, 597, 1272 |
| BseDI | CCNNGG | 4 cut(s) | 352, 575, 596, 1108 |
| BseGI | GGATG | 3 cut(s) | 742, 1084, 1120 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 311, 1247 |
| BseMII | CTCAG | 2 cut(s) | 695, 869 |
| BseNI | ACTGG | 7 cut(s) | 124, 282, 287, 407, 458, 785, 1374 |
| BseRI | GAGGAG | 3 cut(s) | 1080, 1120, 1131 |
| BseSI | GKGCMC | 2 cut(s) | 465, 1248 |
| BseXI | GCAGC | 6 cut(s) | 37, 40, 43, 46, 592, 712 |
| BshFI | GGCC | 5 cut(s) | 239, 727, 891, 1226, 1345 |
| BshNI | GGYRCC | 1 cut(s) | 251 |
| BsiHKCI | CYCGRG | 1 cut(s) | 158 |
| BsiSI | CCGG | 2 cut(s) | 180, 1248 |
| BslFI | GGGAC | 3 cut(s) | 335, 837, 1194 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 311, 1247 |
| BsmAI | GTCTC | 1 cut(s) | 1308 |
| BsmFI | GGGAC | 3 cut(s) | 335, 837, 1194 |
| BsnI | GGCC | 5 cut(s) | 239, 727, 891, 1226, 1345 |
| Bso31I | GGTCTC | 1 cut(s) | 1308 |
| BsoBI | CYCGRG | 1 cut(s) | 158 |
| Bsp1286I | GDGCHC | 2 cut(s) | 465, 1248 |
| Bsp143I | GATC | 2 cut(s) | 183, 192 |
| Bsp19I | CCATGG | 1 cut(s) | 1108 |
| BspACI | CCGC | 3 cut(s) | 626, 1314, 1337 |
| BspANI | GGCC | 5 cut(s) | 239, 727, 891, 1226, 1345 |
| BspCNI | CTCAG | 2 cut(s) | 696, 868 |
| BspLI | GGNNCC | 3 cut(s) | 194, 253, 1227 |
| BspMAI | CTGCAG | 2 cut(s) | 27, 1015 |
| BspPI | GGATC | 3 cut(s) | 187, 191, 200 |
| BspT107I | GGYRCC | 1 cut(s) | 251 |
| BspTI | CTTAAG | 2 cut(s) | 466, 503 |
| BspTNI | GGTCTC | 1 cut(s) | 1308 |
| BsrI | ACTGG | 7 cut(s) | 124, 282, 287, 407, 458, 785, 1374 |
| BssECI | CCNNGG | 4 cut(s) | 352, 575, 596, 1108 |
| BssMI | GATC | 2 cut(s) | 183, 192 |
| BssT1I | CCWWGG | 1 cut(s) | 1108 |
| Bst2UI | CCWGG | 4 cut(s) | 354, 576, 597, 1272 |
| Bst4CI | ACNGT | 5 cut(s) | 259, 392, 589, 849, 1048 |
| Bst6I | CTCTTC | 2 cut(s) | 1060, 1391 |
| BstAFI | CTTAAG | 2 cut(s) | 466, 503 |
| BstC8I | GCNNGC | 1 cut(s) | 23 |
| BstDEI | CTNAG | 3 cut(s) | 704, 855, 1001 |
| BstDSI | CCRYGG | 1 cut(s) | 1108 |
| BstF5I | GGATG | 3 cut(s) | 742, 1084, 1120 |
| BstKTI | GATC | 2 cut(s) | 186, 195 |
| BstMAI | GTCTC | 1 cut(s) | 1308 |
| BstMBI | GATC | 2 cut(s) | 183, 192 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 31, 34, 138, 236, 625, 697, 724, 1232 |
| BstNI | CCWGG | 4 cut(s) | 354, 576, 597, 1272 |
| BstNSI | RCATGY | 1 cut(s) | 1235 |
| BstSCI | CCNGG | 6 cut(s) | 179, 352, 574, 595, 1246, 1270 |
| BstSFI | CTRYAG | 3 cut(s) | 23, 774, 1011 |
| BstSLI | GKGCMC | 2 cut(s) | 465, 1248 |
| BstV1I | GCAGC | 6 cut(s) | 37, 40, 43, 46, 592, 712 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| BstX2I | RGATCY | 2 cut(s) | 183, 192 |
| BstYI | RGATCY | 2 cut(s) | 183, 192 |
| BsuI | GTATCC | 2 cut(s) | 582, 1169 |
| BsuRI | GGCC | 5 cut(s) | 239, 727, 891, 1226, 1345 |
| BtgI | CCRYGG | 1 cut(s) | 1108 |
| BtsCI | GGATG | 3 cut(s) | 742, 1084, 1120 |
| BtsIMutI | CAGTG | 2 cut(s) | 465, 585 |
| Cac8I | GCNNGC | 1 cut(s) | 23 |
| CaiI | CAGNNNCTG | 1 cut(s) | 634 |
| Cfr13I | GGNCC | 3 cut(s) | 1016, 1225, 1343 |
| CseI | GACGC | 1 cut(s) | 130 |
| Csp6I | GTAC | 2 cut(s) | 357, 951 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 822, 857 |
| CviAII | CATG | 4 cut(s) | 379, 1098, 1109, 1232 |
| CviQI | GTAC | 2 cut(s) | 357, 951 |
| DdeI | CTNAG | 3 cut(s) | 704, 855, 1001 |
| DpnI | GATC | 2 cut(s) | 185, 194 |
| DpnII | GATC | 2 cut(s) | 183, 192 |
| DriI | GACNNNNNGTC | 1 cut(s) | 209 |
| Eam1104I | CTCTTC | 2 cut(s) | 1060, 1391 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 209 |
| EarI | CTCTTC | 2 cut(s) | 1060, 1391 |
| Eco130I | CCWWGG | 1 cut(s) | 1108 |
| Eco31I | GGTCTC | 1 cut(s) | 1308 |
| Eco32I | GATATC | 1 cut(s) | 331 |
| Eco47I | GGWCC | 1 cut(s) | 1016 |
| Eco57I | CTGAAG | 2 cut(s) | 256, 1041 |
| Eco88I | CYCGRG | 1 cut(s) | 158 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1343 |
| EcoRII | CCWGG | 4 cut(s) | 352, 574, 595, 1270 |
| EcoRV | GATATC | 1 cut(s) | 331 |
| EcoT14I | CCWWGG | 1 cut(s) | 1108 |
| EcoT22I | ATGCAT | 2 cut(s) | 1177, 1237 |
| ErhI | CCWWGG | 1 cut(s) | 1108 |
| FaeI | CATG | 4 cut(s) | 382, 1101, 1112, 1235 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 789, 821 |
| FaqI | GGGAC | 3 cut(s) | 335, 837, 1194 |
| FatI | CATG | 4 cut(s) | 378, 1097, 1108, 1231 |
| FauI | CCCGC | 1 cut(s) | 1321 |
| Fnu4HI | GCNGC | 6 cut(s) | 26, 29, 32, 35, 606, 701 |
| FokI | GGATG | 3 cut(s) | 749, 1071, 1107 |
| Fsp4HI | GCNGC | 6 cut(s) | 26, 29, 32, 35, 606, 701 |
| FspBI | CTAG | 3 cut(s) | 1155, 1179, 1266 |
| GluI | GCNGC | 6 cut(s) | 26, 29, 32, 35, 606, 701 |
| GsuI | CTGGAG | 1 cut(s) | 966 |
| HaeIII | GGCC | 5 cut(s) | 239, 727, 891, 1226, 1345 |
| HapII | CCGG | 2 cut(s) | 180, 1248 |
| HgaI | GACGC | 1 cut(s) | 130 |
| Hin1II | CATG | 4 cut(s) | 382, 1101, 1112, 1235 |
| HindIII | AAGCTT | 1 cut(s) | 798 |
| HpaII | CCGG | 2 cut(s) | 180, 1248 |
| HphI | GGTGA | 8 cut(s) | 23, 698, 984, 1059, 1125, 1188, 1230, 1302 |
| Hpy166II | GTNNAC | 3 cut(s) | 953, 1051, 1382 |
| Hpy188I | TCNGA | 5 cut(s) | 275, 433, 450, 858, 929 |
| Hpy188III | TCNNGA | 4 cut(s) | 99, 190, 293, 1179 |
| Hpy8I | GTNNAC | 3 cut(s) | 953, 1051, 1382 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 5 cut(s) | 206, 940, 987, 1074, 1209 |
| HpyCH4III | ACNGT | 5 cut(s) | 259, 392, 589, 849, 1048 |
| HpyCH4IV | ACGT | 1 cut(s) | 536 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 31, 34, 138, 236, 625, 697, 724, 1232 |
| HpyF3I | CTNAG | 3 cut(s) | 704, 855, 1001 |
| HpySE526I | ACGT | 1 cut(s) | 536 |
| Hsp92II | CATG | 4 cut(s) | 382, 1101, 1112, 1235 |
| Kzo9I | GATC | 2 cut(s) | 183, 192 |
| LmnI | GCTCC | 4 cut(s) | 697, 991, 1045, 1133 |
| Lsp1109I | GCAGC | 6 cut(s) | 37, 40, 43, 46, 592, 712 |
| LweI | GCATC | 9 cut(s) | 92, 128, 217, 404, 424, 539, 727, 1184, 1244 |
| MaeI | CTAG | 3 cut(s) | 1155, 1179, 1266 |
| MaeII | ACGT | 1 cut(s) | 536 |
| MaeIII | GTNAC | 2 cut(s) | 50, 751 |
| MalI | GATC | 2 cut(s) | 185, 194 |
| MboI | GATC | 2 cut(s) | 183, 192 |
| MboII | GAAGA | 4 cut(s) | 136, 178, 1047, 1378 |
| MflI | RGATCY | 2 cut(s) | 183, 192 |
| MhlI | GDGCHC | 2 cut(s) | 465, 1248 |
| MluCI | AATT | 4 cut(s) | 317, 655, 679, 861 |
| MlyI | GAGTC | 3 cut(s) | 1132, 1216, 1377 |
| MmeI | TCCRAC | 2 cut(s) | 995, 1067 |
| Mph1103I | ATGCAT | 2 cut(s) | 1177, 1237 |
| MseI | TTAA | 5 cut(s) | 243, 467, 504, 639, 1149 |
| MslI | CAYNNNNRTG | 1 cut(s) | 48 |
| MspA1I | CMGCKG | 1 cut(s) | 703 |
| MspCI | CTTAAG | 2 cut(s) | 466, 503 |
| MspI | CCGG | 2 cut(s) | 180, 1248 |
| MspR9I | CCNGG | 6 cut(s) | 181, 354, 576, 597, 1248, 1272 |
| MvaI | CCWGG | 4 cut(s) | 354, 576, 597, 1272 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 31, 34, 138, 236, 625, 697, 724, 1232 |
| NciI | CCSGG | 2 cut(s) | 181, 1248 |
| NcoI | CCATGG | 1 cut(s) | 1108 |
| NdeII | GATC | 2 cut(s) | 183, 192 |
| NlaIII | CATG | 4 cut(s) | 382, 1101, 1112, 1235 |
| NlaIV | GGNNCC | 3 cut(s) | 194, 253, 1227 |
| NmeAIII | GCCGAG | 1 cut(s) | 867 |
| NmuCI | GTSAC | 1 cut(s) | 50 |
| NsiI | ATGCAT | 2 cut(s) | 1177, 1237 |
| NspI | RCATGY | 1 cut(s) | 1235 |
| OliI | CACNNNNGTG | 1 cut(s) | 48 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 533 |
| PfeI | GAWTC | 8 cut(s) | 65, 114, 154, 562, 582, 592, 631, 779 |
| PfoI | TCCNGGA | 1 cut(s) | 179 |
| PkrI | GCNGC | 6 cut(s) | 27, 30, 33, 36, 607, 702 |
| PleI | GAGTC | 3 cut(s) | 1132, 1215, 1377 |
| PpsI | GAGTC | 3 cut(s) | 1132, 1215, 1377 |
| Psp1406I | AACGTT | 1 cut(s) | 536 |
| Psp6I | CCWGG | 4 cut(s) | 352, 574, 595, 1270 |
| PspGI | CCWGG | 4 cut(s) | 352, 574, 595, 1270 |
| PspN4I | GGNNCC | 3 cut(s) | 194, 253, 1227 |
| PspPI | GGNCC | 3 cut(s) | 1016, 1225, 1343 |
| PstI | CTGCAG | 2 cut(s) | 27, 1015 |
| PstNI | CAGNNNCTG | 1 cut(s) | 634 |
| PsuI | RGATCY | 2 cut(s) | 183, 192 |
| PvuII | CAGCTG | 1 cut(s) | 703 |
| RsaI | GTAC | 2 cut(s) | 358, 952 |
| RsaNI | GTAC | 2 cut(s) | 357, 951 |
| RseI | CAYNNNNRTG | 1 cut(s) | 48 |
| SaqAI | TTAA | 5 cut(s) | 243, 467, 504, 639, 1149 |
| SatI | GCNGC | 6 cut(s) | 26, 29, 32, 35, 606, 701 |
| Sau3AI | GATC | 2 cut(s) | 183, 192 |
| Sau96I | GGNCC | 3 cut(s) | 1016, 1225, 1343 |
| SchI | GAGTC | 3 cut(s) | 1132, 1216, 1377 |
| ScrFI | CCNGG | 6 cut(s) | 181, 354, 576, 597, 1248, 1272 |
| SduI | GDGCHC | 2 cut(s) | 465, 1248 |
| SfaNI | GCATC | 9 cut(s) | 92, 128, 217, 404, 424, 539, 727, 1184, 1244 |
| SfcI | CTRYAG | 3 cut(s) | 23, 774, 1011 |
| SinI | GGWCC | 1 cut(s) | 1016 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 48 |
| SmlI | CTYRAG | 4 cut(s) | 466, 503, 1218, 1297 |
| SmoI | CTYRAG | 4 cut(s) | 466, 503, 1218, 1297 |
| Sse9I | AATT | 4 cut(s) | 317, 655, 679, 861 |
| SsiI | CCGC | 3 cut(s) | 626, 1314, 1337 |
| SspMI | CTAG | 3 cut(s) | 1155, 1179, 1266 |
| StyD4I | CCNGG | 6 cut(s) | 179, 352, 574, 595, 1246, 1270 |
| StyI | CCWWGG | 1 cut(s) | 1108 |
| TaaI | ACNGT | 5 cut(s) | 259, 392, 589, 849, 1048 |
| TaiI | ACGT | 1 cut(s) | 539 |
| TaqI | TCGA | 5 cut(s) | 136, 202, 213, 225, 292 |
| TaqII | GACCGA | 1 cut(s) | 302 |
| TasI | AATT | 4 cut(s) | 317, 655, 679, 861 |
| TfiI | GAWTC | 8 cut(s) | 65, 114, 154, 562, 582, 592, 631, 779 |
| Tru1I | TTAA | 5 cut(s) | 243, 467, 504, 639, 1149 |
| Tru9I | TTAA | 5 cut(s) | 243, 467, 504, 639, 1149 |
| TscAI | CASTG | 2 cut(s) | 465, 592 |
| TseFI | GTSAC | 1 cut(s) | 50 |
| TseI | GCWGC | 6 cut(s) | 25, 28, 31, 34, 605, 700 |
| Tsp45I | GTSAC | 1 cut(s) | 50 |
| TspDTI | ATGAA | 2 cut(s) | 1378, 1385 |
| TspGWI | ACGGA | 3 cut(s) | 126, 199, 892 |
| TspRI | CASTG | 2 cut(s) | 465, 592 |
| Vha464I | CTTAAG | 2 cut(s) | 466, 503 |
| VpaK11BI | GGWCC | 1 cut(s) | 1016 |
| XapI | RAATTY | 1 cut(s) | 679 |
| XbaI | TCTAGA | 1 cut(s) | 1178 |
| XceI | RCATGY | 1 cut(s) | 1235 |
| XspI | CTAG | 3 cut(s) | 1155, 1179, 1266 |
| Zsp2I | ATGCAT | 2 cut(s) | 1177, 1237 |