Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Reverse (-)

24702701 .. 24707224

Gene Structure 4524 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002048

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGGAAAGGTGAGAAAAGCCTGCACCAGCAGCAGCAGCAGAGTCATCAACCCCACGATTCTTCTTCTTCTGGGTTCGTCTGTCCTCAATGTTCCAGATTCTTCAACGGAATCGCCCACCAGTTCAGCTTTCGATGCGTCTTCGTTTTGATTCTGGGATTATCGGTTTTCCTCTCCGGGATCTTCTGGATCCTTCCTCGACATTCCGTCAATAATGGGTTCGATGCCAGAGAGGCCATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATACGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACAATGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATCCCGTGAATGTTCCGATACTTCCAGTGTCCTTAAGTGTGCTGAGATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGGCAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGCAAGCTGCTTCAATCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATCTAAGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGCTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCTGCAAGAAATCTCGGCCTTGATAACTCTGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAGTCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTATACCAGGGTTCTACTCATCCAAGCTCCTCGCCAACTCCTCATTTTAACCCTAGTATCCCCCCTACTTATGCACCTAGAACTTCGCCTTACTCACCGTCTTTGAGTCCCTCATCTCAAGTTGCCCCACATGCATCACCCTCGCCCGGAGTGTCCGATGCTTCTAGTCCAGGCTACAAGAAAAGTGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGACCTTTCTACAAAGAGATACGGTTATTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

470

Amino Acids

50.76

Weight (kDa)

9.02

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	89 - 180	7.1e-30	Domain of unknown function (DUF7036)
DUF7036	PF23041	213 - 303	2.1e-21	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	623, 1311, 1334
AclI	AACGTT	1 cut(s)	533
AclWI	GGATC	4 cut(s)	184, 188, 197, 425
AcsI	RAATTY	1 cut(s)	676
AcuI	CTGAAG	2 cut(s)	253, 1038
AfaI	GTAC	2 cut(s)	355, 949
AfiI	CCNNNNNNNGG	2 cut(s)	308, 1244
AflII	CTTAAG	2 cut(s)	463, 500
AgsI	TTSAA	7 cut(s)	106, 609, 657, 768, 788, 794, 943
AhdI	GACNNNNNGTC	1 cut(s)	206
AjnI	CCWGG	5 cut(s)	349, 571, 592, 1104, 1267
Alw26I	GTCTC	1 cut(s)	1305
AlwI	GGATC	4 cut(s)	184, 188, 197, 425
AlwNI	CAGNNNCTG	2 cut(s)	631, 838
AoxI	GGCC	3 cut(s)	234, 722, 886
ApeKI	GCWGC	5 cut(s)	31, 34, 37, 602, 697
ApoI	RAATTY	1 cut(s)	676
AspS9I	GGNCC	2 cut(s)	1013, 1340
AsuC2I	CCSGG	2 cut(s)	178, 1245
AsuHPI	GGTGA	7 cut(s)	23, 695, 981, 1056, 1185, 1227, 1299
AvaII	GGWCC	2 cut(s)	1013, 1340
BaeI	ACNNNNGTAYC	4 cut(s)	345, 378, 1138, 1171
BamHI	GGATCC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	701
BbvI	GCAGC	5 cut(s)	43, 46, 49, 589, 709
BccI	CCATC	4 cut(s)	994, 1024, 1312, 1330
BceAI	ACGGC	1 cut(s)	540
BcgI	CGANNNNNNTGC	2 cut(s)	1221, 1255
BciT130I	CCWGG	5 cut(s)	351, 573, 594, 1106, 1269
BciVI	GTATCC	2 cut(s)	579, 1166
BcnI	CCSGG	2 cut(s)	178, 1245
BcoDI	GTCTC	1 cut(s)	1305
BfaI	CTAG	3 cut(s)	1152, 1176, 1263
BfmI	CTRYAG	2 cut(s)	771, 1008
BfrI	CTTAAG	2 cut(s)	463, 500
BfuI	GTATCC	2 cut(s)	579, 1166
BglI	GCCNNNNNGGC	2 cut(s)	233, 835
BisI	GCNGC	5 cut(s)	32, 35, 38, 603, 698
BlsI	GCNGC	5 cut(s)	33, 36, 39, 604, 699
Bme1390I	CCNGG	7 cut(s)	178, 351, 573, 594, 1106, 1245, 1269
Bme18I	GGWCC	2 cut(s)	1013, 1340
BmeRI	GACNNNNNGTC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	1013, 1340
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	7 cut(s)	178, 351, 573, 594, 1106, 1245, 1269
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	7 cut(s)	125, 214, 401, 536, 724, 1241, 1246
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	2 cut(s)	1200, 1315
BpuMI	CCSGG	2 cut(s)	178, 1245
BsaI	GGTCTC	1 cut(s)	1305
BsaJI	CCNNGG	4 cut(s)	349, 572, 593, 1105
BsaXI	ACNNNNNCTCC	6 cut(s)	853, 883, 961, 991, 1069, 1099
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 1244
Bse1I	ACTGG	6 cut(s)	121, 279, 284, 404, 455, 782
BseBI	CCWGG	5 cut(s)	351, 573, 594, 1106, 1269
BseDI	CCNNGG	4 cut(s)	349, 572, 593, 1105
BseGI	GGATG	3 cut(s)	739, 1081, 1117
BseLI	CCNNNNNNNGG	2 cut(s)	308, 1244
BseMII	CTCAG	4 cut(s)	259, 464, 692, 866
BseNI	ACTGG	6 cut(s)	121, 279, 284, 404, 455, 782
BseRI	GAGGAG	3 cut(s)	1077, 1117, 1128
BseXI	GCAGC	5 cut(s)	43, 46, 49, 589, 709
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	236, 724, 888
BsiSI	CCGG	2 cut(s)	177, 1245
BslFI	GGGAC	3 cut(s)	332, 834, 1191
BslI	CCNNNNNNNGG	2 cut(s)	308, 1244
BsmAI	GTCTC	1 cut(s)	1305
BsmFI	GGGAC	3 cut(s)	332, 834, 1191
BsnI	GGCC	3 cut(s)	236, 724, 888
Bso31I	GGTCTC	1 cut(s)	1305
Bsp143I	GATC	4 cut(s)	180, 189, 430, 476
BspACI	CCGC	3 cut(s)	623, 1311, 1334
BspANI	GGCC	3 cut(s)	236, 724, 888
BspCNI	CTCAG	4 cut(s)	258, 465, 693, 865
BspLI	GGNNCC	1 cut(s)	191
BspMAI	CTGCAG	1 cut(s)	1012
BspPI	GGATC	4 cut(s)	184, 188, 197, 425
BspTI	CTTAAG	2 cut(s)	463, 500
BspTNI	GGTCTC	1 cut(s)	1305
BsrI	ACTGG	6 cut(s)	121, 279, 284, 404, 455, 782
BssECI	CCNNGG	4 cut(s)	349, 572, 593, 1105
BssMI	GATC	4 cut(s)	180, 189, 430, 476
Bst2UI	CCWGG	5 cut(s)	351, 573, 594, 1106, 1269
Bst4CI	ACNGT	6 cut(s)	256, 586, 846, 1045, 1197, 1362
Bst6I	CTCTTC	2 cut(s)	1057, 1388
BstAFI	CTTAAG	2 cut(s)	463, 500
BstC8I	GCNNGC	2 cut(s)	23, 600
BstDEI	CTNAG	6 cut(s)	245, 473, 701, 719, 852, 998
BstF5I	GGATG	3 cut(s)	739, 1081, 1117
BstKTI	GATC	4 cut(s)	183, 192, 433, 479
BstMAI	GTCTC	1 cut(s)	1305
BstMBI	GATC	4 cut(s)	180, 189, 430, 476
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 37, 135, 233, 622, 694, 721, 835, 1229
BstNI	CCWGG	5 cut(s)	351, 573, 594, 1106, 1269
BstNSI	RCATGY	1 cut(s)	1232
BstSCI	CCNGG	7 cut(s)	176, 349, 571, 592, 1104, 1243, 1267
BstSFI	CTRYAG	2 cut(s)	771, 1008
BstV1I	GCAGC	5 cut(s)	43, 46, 49, 589, 709
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	180, 189
BstYI	RGATCY	2 cut(s)	180, 189
BsuI	GTATCC	2 cut(s)	579, 1166
BsuRI	GGCC	3 cut(s)	236, 724, 888
BtsCI	GGATG	3 cut(s)	739, 1081, 1117
BtsIMutI	CAGTG	3 cut(s)	253, 462, 582
Cac8I	GCNNGC	2 cut(s)	23, 600
CaiI	CAGNNNCTG	2 cut(s)	631, 838
Cfr13I	GGNCC	2 cut(s)	1013, 1340
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	354, 948
CviAII	CATG	3 cut(s)	376, 1095, 1229
CviQI	GTAC	2 cut(s)	354, 948
DdeI	CTNAG	6 cut(s)	245, 473, 701, 719, 852, 998
DpnI	GATC	4 cut(s)	182, 191, 432, 478
DpnII	GATC	4 cut(s)	180, 189, 430, 476
DriI	GACNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	1057, 1388
Eam1105I	GACNNNNNGTC	1 cut(s)	206
EarI	CTCTTC	2 cut(s)	1057, 1388
Eco147I	AGGCCT	1 cut(s)	724
Eco31I	GGTCTC	1 cut(s)	1305
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	2 cut(s)	1013, 1340
Eco57I	CTGAAG	2 cut(s)	253, 1038
EcoO109I	RGGNCCY	1 cut(s)	1340
EcoRII	CCWGG	5 cut(s)	349, 571, 592, 1104, 1267
EcoRV	GATATC	1 cut(s)	328
EcoT22I	ATGCAT	2 cut(s)	394, 1234
FaeI	CATG	3 cut(s)	379, 1098, 1232
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	3 cut(s)	332, 834, 1191
FatI	CATG	3 cut(s)	375, 1094, 1228
FauI	CCCGC	1 cut(s)	1318
Fnu4HI	GCNGC	5 cut(s)	32, 35, 38, 603, 698
FokI	GGATG	3 cut(s)	746, 1068, 1104
Fsp4HI	GCNGC	5 cut(s)	32, 35, 38, 603, 698
FspBI	CTAG	3 cut(s)	1152, 1176, 1263
GluI	GCNGC	5 cut(s)	32, 35, 38, 603, 698
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	3 cut(s)	236, 724, 888
HapII	CCGG	2 cut(s)	177, 1245
HgaI	GACGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	379, 1098, 1232
HindIII	AAGCTT	1 cut(s)	795
HpaII	CCGG	2 cut(s)	177, 1245
HphI	GGTGA	7 cut(s)	23, 695, 981, 1056, 1185, 1227, 1299
Hpy166II	GTNNAC	3 cut(s)	950, 1048, 1379
Hpy188I	TCNGA	6 cut(s)	272, 430, 447, 855, 926, 1255
Hpy188III	TCNNGA	3 cut(s)	96, 187, 290
Hpy8I	GTNNAC	3 cut(s)	950, 1048, 1379
HpyAV	CCTTC	4 cut(s)	203, 937, 984, 1071
HpyCH4III	ACNGT	6 cut(s)	256, 586, 846, 1045, 1197, 1362
HpyCH4IV	ACGT	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 37, 135, 233, 622, 694, 721, 835, 1229
HpyF3I	CTNAG	6 cut(s)	245, 473, 701, 719, 852, 998
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	3 cut(s)	379, 1098, 1232
Kzo9I	GATC	4 cut(s)	180, 189, 430, 476
LmnI	GCTCC	4 cut(s)	694, 988, 1042, 1130
Lsp1109I	GCAGC	5 cut(s)	43, 46, 49, 589, 709
LweI	GCATC	7 cut(s)	125, 214, 401, 536, 724, 1241, 1246
MaeI	CTAG	3 cut(s)	1152, 1176, 1263
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	4 cut(s)	182, 191, 432, 478
MboI	GATC	4 cut(s)	180, 189, 430, 476
MboII	GAAGA	8 cut(s)	54, 57, 60, 94, 133, 175, 1044, 1375
MflI	RGATCY	2 cut(s)	180, 189
MluCI	AATT	4 cut(s)	314, 652, 676, 858
MlyI	GAGTC	3 cut(s)	52, 1213, 1374
MmeI	TCCRAC	2 cut(s)	992, 1064
Mph1103I	ATGCAT	2 cut(s)	394, 1234
MseI	TTAA	5 cut(s)	240, 464, 501, 636, 1146
MspA1I	CMGCKG	1 cut(s)	700
MspCI	CTTAAG	2 cut(s)	463, 500
MspI	CCGG	2 cut(s)	177, 1245
MspR9I	CCNGG	7 cut(s)	178, 351, 573, 594, 1106, 1245, 1269
MvaI	CCWGG	5 cut(s)	351, 573, 594, 1106, 1269
MwoI	GCNNNNNNNGC	9 cut(s)	31, 37, 135, 233, 622, 694, 721, 835, 1229
NciI	CCSGG	2 cut(s)	178, 1245
NdeII	GATC	4 cut(s)	180, 189, 430, 476
NlaIII	CATG	3 cut(s)	379, 1098, 1232
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	1 cut(s)	864
NsiI	ATGCAT	2 cut(s)	394, 1234
NspI	RCATGY	1 cut(s)	1232
PceI	AGGCCT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PfeI	GAWTC	9 cut(s)	59, 99, 111, 151, 559, 579, 589, 628, 776
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	33, 36, 39, 604, 699
PleI	GAGTC	3 cut(s)	51, 1212, 1374
PpsI	GAGTC	3 cut(s)	51, 1212, 1374
PpuMI	RGGWCCY	1 cut(s)	1340
Psp1406I	AACGTT	1 cut(s)	533
Psp5II	RGGWCCY	1 cut(s)	1340
Psp6I	CCWGG	5 cut(s)	349, 571, 592, 1104, 1267
PspGI	CCWGG	5 cut(s)	349, 571, 592, 1104, 1267
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	2 cut(s)	1013, 1340
PspPPI	RGGWCCY	1 cut(s)	1340
PstI	CTGCAG	1 cut(s)	1012
PstNI	CAGNNNCTG	2 cut(s)	631, 838
PsuI	RGATCY	2 cut(s)	180, 189
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	355, 949
RsaNI	GTAC	2 cut(s)	354, 948
SaqAI	TTAA	5 cut(s)	240, 464, 501, 636, 1146
SatI	GCNGC	5 cut(s)	32, 35, 38, 603, 698
Sau3AI	GATC	4 cut(s)	180, 189, 430, 476
Sau96I	GGNCC	2 cut(s)	1013, 1340
SchI	GAGTC	3 cut(s)	52, 1213, 1374
ScrFI	CCNGG	7 cut(s)	178, 351, 573, 594, 1106, 1245, 1269
SfaNI	GCATC	7 cut(s)	125, 214, 401, 536, 724, 1241, 1246
SfcI	CTRYAG	2 cut(s)	771, 1008
SinI	GGWCC	2 cut(s)	1013, 1340
SmlI	CTYRAG	4 cut(s)	463, 500, 1215, 1294
SmoI	CTYRAG	4 cut(s)	463, 500, 1215, 1294
Sse9I	AATT	4 cut(s)	314, 652, 676, 858
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	3 cut(s)	623, 1311, 1334
SspMI	CTAG	3 cut(s)	1152, 1176, 1263
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	7 cut(s)	176, 349, 571, 592, 1104, 1243, 1267
TaaI	ACNGT	6 cut(s)	256, 586, 846, 1045, 1197, 1362
TaiI	ACGT	1 cut(s)	536
TaqI	TCGA	4 cut(s)	133, 199, 222, 289
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	4 cut(s)	314, 652, 676, 858
TfiI	GAWTC	9 cut(s)	59, 99, 111, 151, 559, 579, 589, 628, 776
Tru1I	TTAA	5 cut(s)	240, 464, 501, 636, 1146
Tru9I	TTAA	5 cut(s)	240, 464, 501, 636, 1146
TscAI	CASTG	3 cut(s)	253, 462, 589
TseI	GCWGC	5 cut(s)	31, 34, 37, 602, 697
TspDTI	ATGAA	2 cut(s)	1375, 1382
TspGWI	ACGGA	2 cut(s)	123, 196
TspRI	CASTG	3 cut(s)	253, 462, 589
Vha464I	CTTAAG	2 cut(s)	463, 500
VpaK11BI	GGWCC	2 cut(s)	1013, 1340
XapI	RAATTY	1 cut(s)	676
XceI	RCATGY	1 cut(s)	1232
XspI	CTAG	3 cut(s)	1152, 1176, 1263
Zsp2I	ATGCAT	2 cut(s)	394, 1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.