Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

46384167 .. 46390105

Gene Structure 5939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG369300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATCCCGTGAATGTTCCGATACTTCCAGTGTCCTTAAGTGTGCTGAAATCATCTTTGGTTGAGCTGTTCCTTAAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGGCAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCACTCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATCTAAGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCTGCAAGAAATCTCGGCCTTGATAACTCTGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTTTACCATGGTTCTACTCGTCCAAGCTCCTCGCCGACTCCTCATTTTAACCCTAGTATCCCCCCTACTTATGCACCTAGAACTTCGCCTCACTCACCTTCTATGAGTCCCTCATCTCAAGTGGCCCCACATGCATCACCCGCGCCCGGAGTGTCTTATGCTTCTAGTCCAGGCTACAAGAAAAGTGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTACTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

36.83

Weight (kDa)

9.38

Isoelectric Point (pI)

68.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	2 - 55	1.5e-13	Domain of unknown function (DUF7036)
DUF7036	PF23041	88 - 178	1.2e-21	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	866
AciI	CCGC	4 cut(s)	248, 864, 936, 959
AclI	AACGTT	1 cut(s)	158
AclWI	GGATC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	1 cut(s)	869
AflII	CTTAAG	2 cut(s)	88, 125
AgsI	TTSAA	6 cut(s)	282, 393, 413, 419, 466, 568
AjnI	CCWGG	3 cut(s)	196, 217, 892
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	8 cut(s)	118, 227, 313, 325, 422, 476, 608, 750
AluI	AGCT	8 cut(s)	118, 227, 313, 325, 422, 476, 608, 750
Alw26I	GTCTC	1 cut(s)	930
AlwI	GGATC	1 cut(s)	50
AlwNI	CAGNNNCTG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	347, 511, 846, 965
ApeKI	GCWGC	2 cut(s)	227, 322
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	3 cut(s)	638, 847, 965
AsuC2I	CCSGG	1 cut(s)	870
AsuHPI	GGTGA	6 cut(s)	320, 606, 681, 810, 852, 924
AvaII	GGWCC	1 cut(s)	638
BaeI	ACNNNNGTAYC	2 cut(s)	763, 796
BbvCI	CCTCAGC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	214, 334
BccI	CCATC	4 cut(s)	619, 649, 937, 955
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	3 cut(s)	198, 219, 894
BciVI	GTATCC	2 cut(s)	204, 791
BcnI	CCSGG	1 cut(s)	870
BcoDI	GTCTC	1 cut(s)	930
BfaI	CTAG	3 cut(s)	777, 801, 888
BfmI	CTRYAG	2 cut(s)	396, 633
BfrI	CTTAAG	2 cut(s)	88, 125
BfuI	GTATCC	2 cut(s)	204, 791
BisI	GCNGC	2 cut(s)	228, 323
BlsI	GCNGC	2 cut(s)	229, 324
Bme1390I	CCNGG	4 cut(s)	198, 219, 870, 894
Bme18I	GGWCC	1 cut(s)	638
BmgT120I	GGNCC	3 cut(s)	638, 847, 965
BmiI	GGNNCC	1 cut(s)	849
BmrFI	CCNGG	4 cut(s)	198, 219, 870, 894
BmrI	ACTGGG	2 cut(s)	401, 1001
BmsI	GCATC	4 cut(s)	26, 161, 349, 866
BmuI	ACTGGG	2 cut(s)	401, 1001
BpmI	CTGGAG	1 cut(s)	588
Bpu10I	CCTNAGC	1 cut(s)	326
BpuEI	CTTGAG	2 cut(s)	825, 940
BpuMI	CCSGG	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	930
BsaJI	CCNNGG	3 cut(s)	197, 218, 730
BsaXI	ACNNNNNCTCC	6 cut(s)	478, 508, 586, 616, 694, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	869
Bse1I	ACTGG	4 cut(s)	29, 80, 407, 996
BseBI	CCWGG	3 cut(s)	198, 219, 894
BseDI	CCNNGG	3 cut(s)	197, 218, 730
BseGI	GGATG	2 cut(s)	364, 706
BseLI	CCNNNNNNNGG	1 cut(s)	869
BseMII	CTCAG	2 cut(s)	317, 491
BseNI	ACTGG	4 cut(s)	29, 80, 407, 996
BseRI	GAGGAG	3 cut(s)	702, 742, 753
BseXI	GCAGC	2 cut(s)	214, 334
Bsh1236I	CGCG	1 cut(s)	866
BshFI	GGCC	4 cut(s)	349, 513, 848, 967
BsiSI	CCGG	1 cut(s)	870
BslFI	GGGAC	2 cut(s)	459, 816
BslI	CCNNNNNNNGG	1 cut(s)	869
BsmAI	GTCTC	1 cut(s)	930
BsmFI	GGGAC	2 cut(s)	459, 816
BsnI	GGCC	4 cut(s)	349, 513, 848, 967
Bso31I	GGTCTC	1 cut(s)	930
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	730
BspACI	CCGC	4 cut(s)	248, 864, 936, 959
BspANI	GGCC	4 cut(s)	349, 513, 848, 967
BspCNI	CTCAG	2 cut(s)	318, 490
BspFNI	CGCG	1 cut(s)	866
BspLI	GGNNCC	1 cut(s)	849
BspMAI	CTGCAG	1 cut(s)	637
BspPI	GGATC	1 cut(s)	50
BspTI	CTTAAG	2 cut(s)	88, 125
BspTNI	GGTCTC	1 cut(s)	930
BsrI	ACTGG	4 cut(s)	29, 80, 407, 996
BssECI	CCNNGG	3 cut(s)	197, 218, 730
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	3 cut(s)	198, 219, 894
Bst4CI	ACNGT	4 cut(s)	14, 211, 471, 670
Bst6I	CTCTTC	2 cut(s)	682, 1013
BstAFI	CTTAAG	2 cut(s)	88, 125
BstDEI	CTNAG	4 cut(s)	326, 344, 477, 623
BstDSI	CCRYGG	1 cut(s)	730
BstF5I	GGATG	2 cut(s)	364, 706
BstFNI	CGCG	1 cut(s)	866
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	930
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	5 cut(s)	247, 319, 346, 854, 863
BstNI	CCWGG	3 cut(s)	198, 219, 894
BstNSI	RCATGY	1 cut(s)	857
BstSCI	CCNGG	4 cut(s)	196, 217, 868, 892
BstSFI	CTRYAG	2 cut(s)	396, 633
BstUI	CGCG	1 cut(s)	866
BstV1I	GCAGC	2 cut(s)	214, 334
BsuI	GTATCC	2 cut(s)	204, 791
BsuRI	GGCC	4 cut(s)	349, 513, 848, 967
BtgI	CCRYGG	1 cut(s)	730
BtsCI	GGATG	2 cut(s)	364, 706
BtsIMutI	CAGTG	2 cut(s)	87, 207
CaiI	CAGNNNCTG	1 cut(s)	256
CfoI	GCGC	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	638, 847, 965
Csp6I	GTAC	1 cut(s)	573
CspCI	CAANNNNNGTGG	2 cut(s)	444, 479
CviAII	CATG	3 cut(s)	720, 731, 854
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	4 cut(s)	326, 344, 477, 623
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
Eam1104I	CTCTTC	2 cut(s)	682, 1013
EarI	CTCTTC	2 cut(s)	682, 1013
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	349
Eco31I	GGTCTC	1 cut(s)	930
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	663
EcoO109I	RGGNCCY	1 cut(s)	965
EcoRII	CCWGG	3 cut(s)	196, 217, 892
EcoT14I	CCWWGG	1 cut(s)	730
EcoT22I	ATGCAT	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	3 cut(s)	723, 734, 857
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	2 cut(s)	459, 816
FatI	CATG	3 cut(s)	719, 730, 853
FauI	CCCGC	2 cut(s)	871, 943
Fnu4HI	GCNGC	2 cut(s)	228, 323
FokI	GGATG	2 cut(s)	371, 693
Fsp4HI	GCNGC	2 cut(s)	228, 323
FspBI	CTAG	3 cut(s)	777, 801, 888
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	2 cut(s)	228, 323
GsuI	CTGGAG	1 cut(s)	588
HaeIII	GGCC	4 cut(s)	349, 513, 848, 967
HapII	CCGG	1 cut(s)	870
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	3 cut(s)	723, 734, 857
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	8 cut(s)	184, 204, 214, 253, 401, 760, 829, 1005
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	6 cut(s)	320, 606, 681, 810, 852, 924
Hpy166II	GTNNAC	3 cut(s)	575, 673, 1004
Hpy188I	TCNGA	4 cut(s)	55, 72, 480, 551
Hpy8I	GTNNAC	3 cut(s)	575, 673, 1004
HpyAV	CCTTC	4 cut(s)	562, 609, 696, 831
HpyCH4III	ACNGT	4 cut(s)	14, 211, 471, 670
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	9 cut(s)	4, 17, 340, 370, 500, 635, 797, 857, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	247, 319, 346, 854, 863
HpyF3I	CTNAG	4 cut(s)	326, 344, 477, 623
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	723, 734, 857
HspAI	GCGC	1 cut(s)	866
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	4 cut(s)	319, 613, 667, 755
Lsp1109I	GCAGC	2 cut(s)	214, 334
LweI	GCATC	4 cut(s)	26, 161, 349, 866
MaeI	CTAG	3 cut(s)	777, 801, 888
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	669, 1000
MluCI	AATT	3 cut(s)	277, 301, 483
MlyI	GAGTC	3 cut(s)	754, 838, 999
MmeI	TCCRAC	2 cut(s)	617, 689
Mph1103I	ATGCAT	1 cut(s)	859
MseI	TTAA	4 cut(s)	89, 126, 261, 771
MspA1I	CMGCKG	1 cut(s)	325
MspCI	CTTAAG	2 cut(s)	88, 125
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	4 cut(s)	198, 219, 870, 894
MvaI	CCWGG	3 cut(s)	198, 219, 894
MvnI	CGCG	1 cut(s)	866
MwoI	GCNNNNNNNGC	5 cut(s)	247, 319, 346, 854, 863
NciI	CCSGG	1 cut(s)	870
NcoI	CCATGG	1 cut(s)	730
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	723, 734, 857
NlaIV	GGNNCC	1 cut(s)	849
NmeAIII	GCCGAG	1 cut(s)	489
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	857
PceI	AGGCCT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	5 cut(s)	184, 204, 214, 253, 401
PkrI	GCNGC	2 cut(s)	229, 324
PleI	GAGTC	3 cut(s)	754, 837, 999
PpsI	GAGTC	3 cut(s)	754, 837, 999
Psp1406I	AACGTT	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	196, 217, 892
PspGI	CCWGG	3 cut(s)	196, 217, 892
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	3 cut(s)	638, 847, 965
PstI	CTGCAG	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SaqAI	TTAA	4 cut(s)	89, 126, 261, 771
SatI	GCNGC	2 cut(s)	228, 323
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	3 cut(s)	638, 847, 965
SchI	GAGTC	3 cut(s)	754, 838, 999
ScrFI	CCNGG	4 cut(s)	198, 219, 870, 894
SfaNI	GCATC	4 cut(s)	26, 161, 349, 866
SfcI	CTRYAG	2 cut(s)	396, 633
SinI	GGWCC	1 cut(s)	638
SmlI	CTYRAG	4 cut(s)	88, 125, 840, 919
SmoI	CTYRAG	4 cut(s)	88, 125, 840, 919
Sse9I	AATT	3 cut(s)	277, 301, 483
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	4 cut(s)	248, 864, 936, 959
SspMI	CTAG	3 cut(s)	777, 801, 888
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	4 cut(s)	196, 217, 868, 892
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	4 cut(s)	14, 211, 471, 670
TaiI	ACGT	1 cut(s)	161
TasI	AATT	3 cut(s)	277, 301, 483
TfiI	GAWTC	5 cut(s)	184, 204, 214, 253, 401
Tru1I	TTAA	4 cut(s)	89, 126, 261, 771
Tru9I	TTAA	4 cut(s)	89, 126, 261, 771
TscAI	CASTG	2 cut(s)	87, 214
TseI	GCWGC	2 cut(s)	227, 322
TspDTI	ATGAA	2 cut(s)	1000, 1007
TspRI	CASTG	2 cut(s)	87, 214
Vha464I	CTTAAG	2 cut(s)	88, 125
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	301
XceI	RCATGY	1 cut(s)	857
XspI	CTAG	3 cut(s)	777, 801, 888
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.