Rh7BG342500

BEST Arabidopsis thaliana protein match is hydroxyproline-rich glycoprotein family protein (TAIR AT3G56590.2)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0007862
Physical Location & Seq
Forward (+)
35741753 .. 35746422
4670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG342500.1

Sequence Viewer

Length: 1428 bp
ATGGGGAAAGGTGAGAAAAGCCTGCATCAGCAGCAGCAGCACAGCCACCAGAGTCATCAACCCCACGATTCTTCTTCTTCTTCTGGGTTCGTCAGTCCTCAATGTTCCAGATTCTTTAACGGAATCGCCCACCAGTTCAGCTTTCGATGCGTCTTCGTTTTGATTCTCGGATTATCGGTTTTTCTCTCCGGGATCTTCTGGATCCTTCCTCGACATTCCGTCAATAATGGGTTCGATGCCAAAGAGGCCATTAAGCTCAGTGCCACAGTTCAGGCATACTTCAGACTGGAAAAGCCAGTTCGAGAGCTTGTTCCACACATCGGTCAATTAGAATACGATATCTATGGGGAAATAGGTGTCCCAGGTACAAAGGTGGCTATTTTGTCCATGCACCAATACGGTGCATCTAACTGGACTGATGTGGTGTTCGGTGTTCTTTCCGATCCCGTGAATGTTCCGATACTTCCAGTGTCCTTAAGTGTGCTGAGATCATCTTTGGTTGAGCTGTTCCTTGAGCAATCTAATCTTACATTGACGGCATCAACGTTCGGGCAACCATATATGTTTGAGATTCTAAAGTATCCTGGGGGAATCACTGTGATTCCTGGGAAAGCTGCTTCAATCTGGCAGATACCGCAGATTCTGTTTAACTTTACTCTCAATAATTCAATAACTGAAATAGTGGAAAATTTTGGTGAGCTAAAGGAGCAGCTGAGGTTTGGGTTGCATTTAAGGCCTTACGAGGATGTCTTTCTGCAAGTAACAAACACATTGGGTTCAACTACAGATTCCCCAGTTGAAGTTCAAGCTTCGCTTATGTCTGCTTTTGGGGGACTTCTGCCACAGAGGTTGAAACAGTTAGCTCAGACAATTACAGGCTCTCCGGCAAGAAATCTCGGCCTTGATAACTCCGTCTTTGGTAAGGTCAAAAGTATCAGATTATCCTCCTATTTGAAGGGTACACTTTTTGCCACCCCTCCAACTCCTTCTCCAGCTCCAGCTCCATCACCAGAACTAAGTGATACTGCAGGACCATCAATCTCTCCAAATCCTGCTCCAACAGTTTACTCTTCAGCACCTTCACCCTCCAAGACTACACATCCTCCTCGTCCATGTTTATACCATGGTTCTACTCATCCAAGCTCCTCGCCAACTCCTCATTTTAACCCTAGTATGCCCCCTACTTATGCACCTAGAACTTCGCCTTACTCACCTTCTATGAGTCCCTCATCTCAAGTGGCCCCACATGCATCACCCGCTCCCGGAGTGTCCTATGCTTCTAGTCCAGGCTACAAGAAAAGTGCAAAAGGCTTGAGGTCTCCATCACCCGCCCCAACCCCATCATCTTTAGCGGTAGGGCCTTTCTACAAAGAGATACGATTATTGGGATTTTGTGGACTCTTCATCTTTCATCTCCTTTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

51.38

Weight (kDa)

9.05

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7036 PF23041 93 - 184 9.3e-30 Domain of unknown function (DUF7036)
DUF7036 PF23041 217 - 307 2.2e-21 Domain of unknown function (DUF7036)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1259
AciI CCGC 4 cut(s) 635, 1257, 1329, 1352
AclI AACGTT 1 cut(s) 545
AclWI GGATC 4 cut(s) 196, 200, 209, 437
AcsI RAATTY 1 cut(s) 688
AcuI CTGAAG 2 cut(s) 265, 1056
AfaI GTAC 2 cut(s) 367, 961
AfiI CCNNNNNNNGG 2 cut(s) 320, 1262
AflII CTTAAG 1 cut(s) 475
AgsI TTSAA 7 cut(s) 621, 669, 780, 800, 806, 853, 955
AhdI GACNNNNNGTC 1 cut(s) 218
AjnI CCWGG 4 cut(s) 361, 583, 604, 1285
Alw26I GTCTC 1 cut(s) 1323
AlwI GGATC 4 cut(s) 196, 200, 209, 437
AlwNI CAGNNNCTG 1 cut(s) 643
AoxI GGCC 5 cut(s) 246, 734, 898, 1239, 1358
ApeKI GCWGC 5 cut(s) 31, 34, 37, 614, 709
ApoI RAATTY 1 cut(s) 688
AspS9I GGNCC 3 cut(s) 1031, 1240, 1358
AsuC2I CCSGG 2 cut(s) 190, 1263
AsuHPI GGTGA 7 cut(s) 23, 707, 999, 1074, 1203, 1245, 1317
AvaII GGWCC 1 cut(s) 1031
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BamHI GGATCC 1 cut(s) 201
BbsI GAAGAC 1 cut(s) 145
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 5 cut(s) 43, 46, 49, 601, 721
BccI CCATC 4 cut(s) 1012, 1042, 1330, 1348
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 4 cut(s) 363, 585, 606, 1287
BciVI GTATCC 1 cut(s) 591
BcnI CCSGG 2 cut(s) 190, 1263
BcoDI GTCTC 1 cut(s) 1323
BfaI CTAG 3 cut(s) 1170, 1194, 1281
BfmI CTRYAG 2 cut(s) 783, 1026
BfrI CTTAAG 1 cut(s) 475
BfuI GTATCC 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 5 cut(s) 32, 35, 38, 615, 710
BlsI GCNGC 5 cut(s) 33, 36, 39, 616, 711
Bme1390I CCNGG 6 cut(s) 190, 363, 585, 606, 1263, 1287
Bme18I GGWCC 1 cut(s) 1031
BmeRI GACNNNNNGTC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 1031, 1240, 1358
BmiI GGNNCC 2 cut(s) 203, 1242
BmrFI CCNGG 6 cut(s) 190, 363, 585, 606, 1263, 1287
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 6 cut(s) 34, 137, 226, 413, 548, 1259
BmuI ACTGGG 1 cut(s) 788
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 2 cut(s) 975, 981
Bpu10I CCTNAGC 1 cut(s) 713
BpuEI CTTGAG 3 cut(s) 533, 1218, 1333
BpuMI CCSGG 2 cut(s) 190, 1263
BsaI GGTCTC 1 cut(s) 1323
BsaJI CCNNGG 4 cut(s) 361, 584, 605, 1123
BsaXI ACNNNNNCTCC 6 cut(s) 865, 895, 973, 1003, 1087, 1117
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 1262
Bse1I ACTGG 6 cut(s) 133, 291, 296, 416, 467, 794
BseBI CCWGG 4 cut(s) 363, 585, 606, 1287
BseDI CCNNGG 4 cut(s) 361, 584, 605, 1123
BseGI GGATG 3 cut(s) 751, 1099, 1135
BseLI CCNNNNNNNGG 2 cut(s) 320, 1262
BseMII CTCAG 4 cut(s) 271, 476, 704, 878
BseNI ACTGG 6 cut(s) 133, 291, 296, 416, 467, 794
BseRI GAGGAG 3 cut(s) 1095, 1135, 1146
BseXI GCAGC 5 cut(s) 43, 46, 49, 601, 721
BshFI GGCC 5 cut(s) 248, 736, 900, 1241, 1360
BsiSI CCGG 3 cut(s) 189, 884, 1263
BslFI GGGAC 3 cut(s) 344, 846, 1209
BslI CCNNNNNNNGG 2 cut(s) 320, 1262
BsmAI GTCTC 1 cut(s) 1323
BsmFI GGGAC 3 cut(s) 344, 846, 1209
BsnI GGCC 5 cut(s) 248, 736, 900, 1241, 1360
Bso31I GGTCTC 1 cut(s) 1323
Bsp143I GATC 4 cut(s) 192, 201, 442, 488
Bsp19I CCATGG 1 cut(s) 1123
BspACI CCGC 4 cut(s) 635, 1257, 1329, 1352
BspANI GGCC 5 cut(s) 248, 736, 900, 1241, 1360
BspCNI CTCAG 4 cut(s) 270, 477, 705, 877
BspLI GGNNCC 2 cut(s) 203, 1242
BspMAI CTGCAG 1 cut(s) 1030
BspPI GGATC 4 cut(s) 196, 200, 209, 437
BspTI CTTAAG 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 1323
BsrBI CCGCTC 1 cut(s) 1259
BsrI ACTGG 6 cut(s) 133, 291, 296, 416, 467, 794
BssECI CCNNGG 4 cut(s) 361, 584, 605, 1123
BssMI GATC 4 cut(s) 192, 201, 442, 488
BssT1I CCWWGG 1 cut(s) 1123
Bst2UI CCWGG 4 cut(s) 363, 585, 606, 1287
Bst4CI ACNGT 5 cut(s) 268, 401, 598, 858, 1063
Bst6I CTCTTC 2 cut(s) 1075, 1406
BstAFI CTTAAG 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 5 cut(s) 257, 485, 713, 864, 1016
BstDSI CCRYGG 1 cut(s) 1123
BstF5I GGATG 3 cut(s) 751, 1099, 1135
BstKTI GATC 4 cut(s) 195, 204, 445, 491
BstMAI GTCTC 1 cut(s) 1323
BstMBI GATC 4 cut(s) 192, 201, 442, 488
BstMWI GCNNNNNNNGC 9 cut(s) 31, 37, 147, 245, 634, 706, 733, 1247, 1256
BstNI CCWGG 4 cut(s) 363, 585, 606, 1287
BstNSI RCATGY 1 cut(s) 1250
BstSCI CCNGG 6 cut(s) 188, 361, 583, 604, 1261, 1285
BstSFI CTRYAG 2 cut(s) 783, 1026
BstV1I GCAGC 5 cut(s) 43, 46, 49, 601, 721
BstV2I GAAGAC 1 cut(s) 145
BstX2I RGATCY 2 cut(s) 192, 201
BstYI RGATCY 2 cut(s) 192, 201
BsuI GTATCC 1 cut(s) 591
BsuRI GGCC 5 cut(s) 248, 736, 900, 1241, 1360
BtgI CCRYGG 1 cut(s) 1123
BtsCI GGATG 3 cut(s) 751, 1099, 1135
BtsIMutI CAGTG 3 cut(s) 265, 474, 594
Cac8I GCNNGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 643
Cfr13I GGNCC 3 cut(s) 1031, 1240, 1358
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 366, 960
CspCI CAANNNNNGTGG 2 cut(s) 831, 866
CviAII CATG 4 cut(s) 388, 1113, 1124, 1247
CviQI GTAC 2 cut(s) 366, 960
DdeI CTNAG 5 cut(s) 257, 485, 713, 864, 1016
DpnI GATC 4 cut(s) 194, 203, 444, 490
DpnII GATC 4 cut(s) 192, 201, 442, 488
DriI GACNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 1075, 1406
Eam1105I GACNNNNNGTC 1 cut(s) 218
EarI CTCTTC 2 cut(s) 1075, 1406
Eco130I CCWWGG 1 cut(s) 1123
Eco147I AGGCCT 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 1323
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 2 cut(s) 265, 1056
EcoO109I RGGNCCY 1 cut(s) 1358
EcoRII CCWGG 4 cut(s) 361, 583, 604, 1285
EcoRV GATATC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 1123
EcoT22I ATGCAT 1 cut(s) 1252
ErhI CCWWGG 1 cut(s) 1123
FaeI CATG 4 cut(s) 391, 1116, 1127, 1250
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 3 cut(s) 344, 846, 1209
FatI CATG 4 cut(s) 387, 1112, 1123, 1246
FauI CCCGC 2 cut(s) 1264, 1336
Fnu4HI GCNGC 5 cut(s) 32, 35, 38, 615, 710
FokI GGATG 3 cut(s) 758, 1086, 1122
Fsp4HI GCNGC 5 cut(s) 32, 35, 38, 615, 710
FspBI CTAG 3 cut(s) 1170, 1194, 1281
GluI GCNGC 5 cut(s) 32, 35, 38, 615, 710
GsuI CTGGAG 2 cut(s) 975, 981
HaeIII GGCC 5 cut(s) 248, 736, 900, 1241, 1360
HapII CCGG 3 cut(s) 189, 884, 1263
HgaI GACGC 1 cut(s) 139
Hin1II CATG 4 cut(s) 391, 1116, 1127, 1250
HindIII AAGCTT 1 cut(s) 807
HpaII CCGG 3 cut(s) 189, 884, 1263
HphI GGTGA 7 cut(s) 23, 707, 999, 1074, 1203, 1245, 1317
Hpy166II GTNNAC 3 cut(s) 962, 1066, 1397
Hpy188I TCNGA 6 cut(s) 170, 284, 442, 459, 867, 938
Hpy188III TCNNGA 3 cut(s) 108, 199, 302
Hpy8I GTNNAC 3 cut(s) 962, 1066, 1397
HpyAV CCTTC 5 cut(s) 215, 949, 996, 1089, 1224
HpyCH4III ACNGT 5 cut(s) 268, 401, 598, 858, 1063
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 9 cut(s) 25, 391, 404, 727, 757, 1028, 1190, 1250, 1304
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 37, 147, 245, 634, 706, 733, 1247, 1256
HpyF3I CTNAG 5 cut(s) 257, 485, 713, 864, 1016
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 391, 1116, 1127, 1250
Kzo9I GATC 4 cut(s) 192, 201, 442, 488
LmnI GCTCC 6 cut(s) 706, 1000, 1006, 1060, 1148, 1264
Lsp1109I GCAGC 5 cut(s) 43, 46, 49, 601, 721
LweI GCATC 6 cut(s) 34, 137, 226, 413, 548, 1259
MaeI CTAG 3 cut(s) 1170, 1194, 1281
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 760
MalI GATC 4 cut(s) 194, 203, 444, 490
MbiI CCGCTC 1 cut(s) 1259
MboI GATC 4 cut(s) 192, 201, 442, 488
MboII GAAGA 8 cut(s) 63, 66, 69, 72, 145, 187, 1062, 1393
MflI RGATCY 2 cut(s) 192, 201
MluCI AATT 4 cut(s) 326, 664, 688, 870
MlyI GAGTC 3 cut(s) 61, 1231, 1392
MmeI TCCRAC 2 cut(s) 1004, 1082
Mph1103I ATGCAT 1 cut(s) 1252
MseI TTAA 6 cut(s) 117, 252, 476, 648, 731, 1164
MspA1I CMGCKG 1 cut(s) 712
MspCI CTTAAG 1 cut(s) 475
MspI CCGG 3 cut(s) 189, 884, 1263
MspR9I CCNGG 6 cut(s) 190, 363, 585, 606, 1263, 1287
MvaI CCWGG 4 cut(s) 363, 585, 606, 1287
MwoI GCNNNNNNNGC 9 cut(s) 31, 37, 147, 245, 634, 706, 733, 1247, 1256
NciI CCSGG 2 cut(s) 190, 1263
NcoI CCATGG 1 cut(s) 1123
NdeII GATC 4 cut(s) 192, 201, 442, 488
NlaIII CATG 4 cut(s) 391, 1116, 1127, 1250
NlaIV GGNNCC 2 cut(s) 203, 1242
NmeAIII GCCGAG 1 cut(s) 876
NsiI ATGCAT 1 cut(s) 1252
NspI RCATGY 1 cut(s) 1250
PceI AGGCCT 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 542
PfeI GAWTC 9 cut(s) 68, 111, 123, 163, 571, 591, 601, 640, 788
PfoI TCCNGGA 2 cut(s) 188, 1261
PkrI GCNGC 5 cut(s) 33, 36, 39, 616, 711
PleI GAGTC 3 cut(s) 60, 1230, 1392
PpsI GAGTC 3 cut(s) 60, 1230, 1392
Psp1406I AACGTT 1 cut(s) 545
Psp6I CCWGG 4 cut(s) 361, 583, 604, 1285
PspGI CCWGG 4 cut(s) 361, 583, 604, 1285
PspN4I GGNNCC 2 cut(s) 203, 1242
PspPI GGNCC 3 cut(s) 1031, 1240, 1358
PstI CTGCAG 1 cut(s) 1030
PstNI CAGNNNCTG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 192, 201
PvuII CAGCTG 1 cut(s) 712
RsaI GTAC 2 cut(s) 367, 961
RsaNI GTAC 2 cut(s) 366, 960
SaqAI TTAA 6 cut(s) 117, 252, 476, 648, 731, 1164
SatI GCNGC 5 cut(s) 32, 35, 38, 615, 710
Sau3AI GATC 4 cut(s) 192, 201, 442, 488
Sau96I GGNCC 3 cut(s) 1031, 1240, 1358
SchI GAGTC 3 cut(s) 61, 1231, 1392
ScrFI CCNGG 6 cut(s) 190, 363, 585, 606, 1263, 1287
SfaNI GCATC 6 cut(s) 34, 137, 226, 413, 548, 1259
SfcI CTRYAG 2 cut(s) 783, 1026
SinI GGWCC 1 cut(s) 1031
SmlI CTYRAG 4 cut(s) 475, 512, 1233, 1312
SmoI CTYRAG 4 cut(s) 475, 512, 1233, 1312
Sse9I AATT 4 cut(s) 326, 664, 688, 870
SseBI AGGCCT 1 cut(s) 736
SsiI CCGC 4 cut(s) 635, 1257, 1329, 1352
SspMI CTAG 3 cut(s) 1170, 1194, 1281
StuI AGGCCT 1 cut(s) 736
StyD4I CCNGG 6 cut(s) 188, 361, 583, 604, 1261, 1285
StyI CCWWGG 1 cut(s) 1123
TaaI ACNGT 5 cut(s) 268, 401, 598, 858, 1063
TaiI ACGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 145, 211, 234, 301
TaqII GACCGA 1 cut(s) 311
TasI AATT 4 cut(s) 326, 664, 688, 870
TfiI GAWTC 9 cut(s) 68, 111, 123, 163, 571, 591, 601, 640, 788
Tru1I TTAA 6 cut(s) 117, 252, 476, 648, 731, 1164
Tru9I TTAA 6 cut(s) 117, 252, 476, 648, 731, 1164
TscAI CASTG 3 cut(s) 265, 474, 601
TseI GCWGC 5 cut(s) 31, 34, 37, 614, 709
TspDTI ATGAA 2 cut(s) 1393, 1400
TspGWI ACGGA 3 cut(s) 135, 208, 901
TspRI CASTG 3 cut(s) 265, 474, 601
Vha464I CTTAAG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 1031
XapI RAATTY 1 cut(s) 688
XceI RCATGY 1 cut(s) 1250
XspI CTAG 3 cut(s) 1170, 1194, 1281
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.