Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000385.1

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 990

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 256 bp

atggggaaaggtgagaaaagcctgcaccagcagcagcacagccaccagagtcatcaaccccacgattcttcttcttctgggttcgtctgtcctcaatgttccagatgcttcaacggaatcgcccaccagttcagctttcgatgcgtcttcgttttgattctcggattatcggttcttctctccgggatcttctggatccttcctcggcattccgtcgataatgggttcgatgccaaagaggccattaagctcagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.45

Weight (kDa)

8.48

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	190, 194, 203
AgsI	TTSAA	1 cut(s)	112
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	2 cut(s)	135, 250
AluI	AGCT	2 cut(s)	135, 250
AlwI	GGATC	3 cut(s)	190, 194, 203
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	31, 34
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	43, 46
BcnI	CCSGG	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	2 cut(s)	32, 35
BlsI	GCNGC	2 cut(s)	33, 36
Bme1390I	CCNGG	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	197
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	95, 131, 220
BpiI	GAAGAC	1 cut(s)	139
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	43, 46
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	186, 195
BspANI	GGCC	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	197
BspPI	GGATC	3 cut(s)	190, 194, 203
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	186, 195
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	251
BstKTI	GATC	2 cut(s)	189, 198
BstMBI	GATC	2 cut(s)	186, 195
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 141, 239
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	43, 46
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	186, 195
BstYI	RGATCY	2 cut(s)	186, 195
BsuRI	GGCC	1 cut(s)	242
Cac8I	GCNNGC	1 cut(s)	23
CseI	GACGC	1 cut(s)	133
CviJI	RGCY	5 cut(s)	21, 42, 135, 242, 250
CviKI_1	RGCY	5 cut(s)	21, 42, 135, 242, 250
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	188, 197
DpnII	GATC	2 cut(s)	186, 195
Fnu4HI	GCNGC	2 cut(s)	32, 35
Fsp4HI	GCNGC	2 cut(s)	32, 35
GluI	GCNGC	2 cut(s)	32, 35
HaeIII	GGCC	1 cut(s)	242
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	49, 65, 117, 157
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	102, 193
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 141, 239
HpyF3I	CTNAG	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	186, 195
LpnPI	CCDG	8 cut(s)	35, 41, 59, 63, 115, 140, 178, 196
Lsp1109I	GCAGC	2 cut(s)	43, 46
LweI	GCATC	3 cut(s)	95, 131, 220
MalI	GATC	2 cut(s)	188, 197
MboI	GATC	2 cut(s)	186, 195
MboII	GAAGA	6 cut(s)	60, 63, 66, 139, 167, 181
MflI	RGATCY	2 cut(s)	186, 195
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	102, 213, 232
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	31, 141, 239
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	186, 195
NlaIV	GGNNCC	1 cut(s)	197
NmeAIII	GCCGAG	1 cut(s)	184
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	3 cut(s)	65, 117, 157
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	2 cut(s)	33, 36
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	186, 195
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	2 cut(s)	32, 35
Sau3AI	GATC	2 cut(s)	186, 195
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	3 cut(s)	13, 137, 252
SfaNI	GCATC	3 cut(s)	95, 131, 220
StyD4I	CCNGG	1 cut(s)	182
TaqI	TCGA	3 cut(s)	139, 216, 228
TfiI	GAWTC	3 cut(s)	65, 117, 157
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	2 cut(s)	31, 34
TspGWI	ACGGA	2 cut(s)	129, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.