Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000146.1

Orthogroup ID

OG0007862

Physical Location & Seq

Genomic Coordinates Forward (+)

118155 .. 122198

Gene Structure 4044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000146.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

atggggaaaggtgagaaaagcctgcaccagcagcagcacagccaccagagtcatcaaccccacgattcttcttcttctgggttcgtctgtcctcaatgttccagatgcttcaacggaatcgcccaccagttcagctttcgatgcgtcttcgttttgattctcggattatcggttcttctctccgggatcttctggatccttcctcggcattccgtcgataatgggttcgatgccaaagaggccattaagctcagtgccacagttcaggcatacttcagactggaaaagccagttcgagagcttgttccacacatcggtcaattagaatacgatatctatggggaaataggtgtcccaggtacaaaggtggctattttgtccatgcaccaatacggtgcatctaactggactgatgtggtgttcggtgttctttccgatgccgtgaatgttccgatacttccagtgtccttaagtgtgctgaaatcatctttggttgagctgttccttaagcaatctaatcttacattgacggcatcaacgttcggacaaccatatatgtttgagattctaaagtatcctgggggaatcactgtgattcctgggaaagctgcttcaatctggcagataccgcagattctgtttaactttactctcaataattcaataactgaaatagtggaaaattttggtgagctaaaggagcagctgaggtttgggttgcatctatggccttacgaggatgtctttctgcaagtaacaaacacattgggttcaactacagattccccagttgaagttcaagcttcgcttatgtctgcttttgggggactgctgccacagaggttgaaacagttagctcagacaattacaggctctcctgcaagaaatctcggccttgataactccgtctttggtaaggtcaaaagtatcagattatcctcctatttgaagggtacactttttgccacccctccaactccttctccagctccatcaccagaactaagtgatactgcaggaccatcaatctctccaaatcctgctccaacagtttactcttcagcaccttcaccctccaagactacacatcctcctcttccatgtttttaccatggttctactcatccaagctcctcgccgactcctcattttaaccctagtatcccccctacctatgcacctagaacttcgccttactcaccttctatgagtccctcatctcaagtggccccacatgcatcacccgcgcctggagtgtcctatgcatctagtccaggctacaagaaaagtgcaaaaggcttgaggtctccatcacccgccccaaccccatcatctttagcggtagggcctttctacaaagagatacgattactgggattttgtggactcttcatctttcatctcctttgttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

50.89

Weight (kDa)

8.83

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10790
fragaria_vesca	FvH4_5g29560 FvH4_5g29560
malus_domestica	MD08G1228500.v1.1 MD08G1228600.v1.1 MD15G1422400.v1.1 MD15G1422500.v1.1
prunus_persica	Prupe.1G567800_v2.0.a1
pyrus_communis	pycom08g19900 pycom08g19910 pycom15g37430 pycom15g37440
rosa_chinensis	RchiOBHm_Chr7g0222521
rosa_laevigata	RLG00000002048
rosa_multiflora	Rmu_ssc0000146.1_g000026 Rmu_ssc0000385.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236690
rosa_rugosa	Rorug07G0210200
rosa_samantha	Rh7AG351900 Rh7BG342500 Rh7CG369300 Rh7DG348600
rosa_wichuraiana	Rw7G029710 Rw7G030030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1247
AciI	CCGC	4 cut(s)	629, 1245, 1317, 1340
AclI	AACGTT	1 cut(s)	539
AclWI	GGATC	3 cut(s)	190, 194, 203
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	2 cut(s)	259, 1044
AfaI	GTAC	2 cut(s)	361, 955
AfiI	CCNNNNNNNGG	2 cut(s)	314, 1250
AflII	CTTAAG	2 cut(s)	469, 506
AgsI	TTSAA	8 cut(s)	112, 615, 663, 774, 794, 800, 847, 949
AjnI	CCWGG	5 cut(s)	355, 577, 598, 1249, 1273
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
Alw26I	GTCTC	1 cut(s)	1311
AlwI	GGATC	3 cut(s)	190, 194, 203
AlwNI	CAGNNNCTG	1 cut(s)	637
AoxI	GGCC	5 cut(s)	240, 728, 892, 1227, 1346
ApeKI	GCWGC	5 cut(s)	31, 34, 608, 703, 832
ApoI	RAATTY	1 cut(s)	682
AspLEI	GCGC	1 cut(s)	1249
AspS9I	GGNCC	3 cut(s)	1019, 1228, 1346
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	7 cut(s)	23, 701, 987, 1062, 1191, 1233, 1305
AvaII	GGWCC	1 cut(s)	1019
BaeI	ACNNNNGTAYC	4 cut(s)	351, 384, 1144, 1177
BamHI	GGATCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	139
BbvCI	CCTCAGC	1 cut(s)	707
BbvI	GCAGC	5 cut(s)	43, 46, 595, 715, 819
BccI	CCATC	4 cut(s)	1000, 1030, 1318, 1336
BceAI	ACGGC	2 cut(s)	425, 546
BciT130I	CCWGG	5 cut(s)	357, 579, 600, 1251, 1275
BciVI	GTATCC	2 cut(s)	585, 1172
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	1311
BfaI	CTAG	3 cut(s)	1158, 1182, 1269
BfmI	CTRYAG	2 cut(s)	777, 1014
BfrI	CTTAAG	2 cut(s)	469, 506
BfuI	GTATCC	2 cut(s)	585, 1172
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	5 cut(s)	32, 35, 609, 704, 833
BlsI	GCNGC	5 cut(s)	33, 36, 610, 705, 834
Bme1390I	CCNGG	6 cut(s)	184, 357, 579, 600, 1251, 1275
Bme18I	GGWCC	1 cut(s)	1019
BmgT120I	GGNCC	3 cut(s)	1019, 1228, 1346
BmiI	GGNNCC	2 cut(s)	197, 1230
BmrFI	CCNGG	6 cut(s)	184, 357, 579, 600, 1251, 1275
BmrI	ACTGGG	2 cut(s)	782, 1382
BmsI	GCATC	9 cut(s)	95, 131, 220, 407, 427, 542, 730, 1247, 1274
BmuI	ACTGGG	2 cut(s)	782, 1382
BpiI	GAAGAC	1 cut(s)	139
BpmI	CTGGAG	2 cut(s)	969, 1272
Bpu10I	CCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	2 cut(s)	1206, 1321
BpuMI	CCSGG	1 cut(s)	184
BsaI	GGTCTC	1 cut(s)	1311
BsaJI	CCNNGG	5 cut(s)	203, 355, 578, 599, 1111
BsaXI	ACNNNNNCTCC	6 cut(s)	859, 889, 967, 997, 1075, 1105
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 1250
Bse1I	ACTGG	7 cut(s)	127, 285, 290, 410, 461, 788, 1377
BseBI	CCWGG	5 cut(s)	357, 579, 600, 1251, 1275
BseDI	CCNNGG	5 cut(s)	203, 355, 578, 599, 1111
BseGI	GGATG	3 cut(s)	745, 1087, 1123
BseLI	CCNNNNNNNGG	2 cut(s)	314, 1250
BseMII	CTCAG	3 cut(s)	265, 698, 872
BseNI	ACTGG	7 cut(s)	127, 285, 290, 410, 461, 788, 1377
BseRI	GAGGAG	3 cut(s)	1083, 1123, 1134
BseXI	GCAGC	5 cut(s)	43, 46, 595, 715, 819
BsgI	GTGCAG	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	1247
BshFI	GGCC	5 cut(s)	242, 730, 894, 1229, 1348
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	3 cut(s)	338, 840, 1197
BslI	CCNNNNNNNGG	2 cut(s)	314, 1250
BsmAI	GTCTC	1 cut(s)	1311
BsmFI	GGGAC	3 cut(s)	338, 840, 1197
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	5 cut(s)	242, 730, 894, 1229, 1348
Bso31I	GGTCTC	1 cut(s)	1311
Bsp143I	GATC	2 cut(s)	186, 195
Bsp19I	CCATGG	1 cut(s)	1111
BspACI	CCGC	4 cut(s)	629, 1245, 1317, 1340
BspANI	GGCC	5 cut(s)	242, 730, 894, 1229, 1348
BspCNI	CTCAG	3 cut(s)	264, 699, 871
BspFNI	CGCG	1 cut(s)	1247
BspLI	GGNNCC	2 cut(s)	197, 1230
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	3 cut(s)	190, 194, 203
BspTI	CTTAAG	2 cut(s)	469, 506
BspTNI	GGTCTC	1 cut(s)	1311
BsrI	ACTGG	7 cut(s)	127, 285, 290, 410, 461, 788, 1377
BssECI	CCNNGG	5 cut(s)	203, 355, 578, 599, 1111
BssMI	GATC	2 cut(s)	186, 195
BssT1I	CCWWGG	1 cut(s)	1111
Bst2UI	CCWGG	5 cut(s)	357, 579, 600, 1251, 1275
Bst4CI	ACNGT	5 cut(s)	262, 395, 592, 852, 1051
Bst6I	CTCTTC	3 cut(s)	1063, 1101, 1394
BstAFI	CTTAAG	2 cut(s)	469, 506
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	251, 707, 858, 1004
BstDSI	CCRYGG	1 cut(s)	1111
BstF5I	GGATG	3 cut(s)	745, 1087, 1123
BstFNI	CGCG	1 cut(s)	1247
BstHHI	GCGC	1 cut(s)	1249
BstKTI	GATC	2 cut(s)	189, 198
BstMAI	GTCTC	1 cut(s)	1311
BstMBI	GATC	2 cut(s)	186, 195
BstMWI	GCNNNNNNNGC	8 cut(s)	31, 141, 239, 628, 700, 727, 1235, 1244
BstNI	CCWGG	5 cut(s)	357, 579, 600, 1251, 1275
BstNSI	RCATGY	1 cut(s)	1238
BstSCI	CCNGG	6 cut(s)	182, 355, 577, 598, 1249, 1273
BstSFI	CTRYAG	2 cut(s)	777, 1014
BstUI	CGCG	1 cut(s)	1247
BstV1I	GCAGC	5 cut(s)	43, 46, 595, 715, 819
BstV2I	GAAGAC	1 cut(s)	139
BstX2I	RGATCY	2 cut(s)	186, 195
BstYI	RGATCY	2 cut(s)	186, 195
BsuI	GTATCC	2 cut(s)	585, 1172
BsuRI	GGCC	5 cut(s)	242, 730, 894, 1229, 1348
BtgI	CCRYGG	1 cut(s)	1111
BtsCI	GGATG	3 cut(s)	745, 1087, 1123
BtsIMutI	CAGTG	3 cut(s)	259, 468, 588
Cac8I	GCNNGC	1 cut(s)	23
CaiI	CAGNNNCTG	1 cut(s)	637
CfoI	GCGC	1 cut(s)	1249
Cfr13I	GGNCC	3 cut(s)	1019, 1228, 1346
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	360, 954
CspCI	CAANNNNNGTGG	2 cut(s)	825, 860
CviAII	CATG	4 cut(s)	382, 1101, 1112, 1235
CviQI	GTAC	2 cut(s)	360, 954
DdeI	CTNAG	4 cut(s)	251, 707, 858, 1004
DpnI	GATC	2 cut(s)	188, 197
DpnII	GATC	2 cut(s)	186, 195
Eam1104I	CTCTTC	3 cut(s)	1063, 1101, 1394
EarI	CTCTTC	3 cut(s)	1063, 1101, 1394
Eco130I	CCWWGG	1 cut(s)	1111
Eco31I	GGTCTC	1 cut(s)	1311
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	1019
Eco57I	CTGAAG	2 cut(s)	259, 1044
EcoO109I	RGGNCCY	1 cut(s)	1346
EcoRII	CCWGG	5 cut(s)	355, 577, 598, 1249, 1273
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	1111
EcoT22I	ATGCAT	2 cut(s)	1240, 1267
ErhI	CCWWGG	1 cut(s)	1111
FaeI	CATG	4 cut(s)	385, 1104, 1115, 1238
FalI	AAGNNNNNCTT	2 cut(s)	792, 824
FaqI	GGGAC	3 cut(s)	338, 840, 1197
FatI	CATG	4 cut(s)	381, 1100, 1111, 1234
FauI	CCCGC	2 cut(s)	1252, 1324
Fnu4HI	GCNGC	5 cut(s)	32, 35, 609, 704, 833
FokI	GGATG	3 cut(s)	752, 1074, 1110
Fsp4HI	GCNGC	5 cut(s)	32, 35, 609, 704, 833
FspBI	CTAG	3 cut(s)	1158, 1182, 1269
GlaI	GCGC	1 cut(s)	1248
GluI	GCNGC	5 cut(s)	32, 35, 609, 704, 833
GsuI	CTGGAG	2 cut(s)	969, 1272
HaeIII	GGCC	5 cut(s)	242, 730, 894, 1229, 1348
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	1249
Hin1II	CATG	4 cut(s)	385, 1104, 1115, 1238
Hin6I	GCGC	1 cut(s)	1247
HinP1I	GCGC	1 cut(s)	1247
HindIII	AAGCTT	1 cut(s)	801
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	7 cut(s)	23, 701, 987, 1062, 1191, 1233, 1305
Hpy166II	GTNNAC	3 cut(s)	956, 1054, 1385
Hpy188I	TCNGA	7 cut(s)	164, 278, 436, 453, 545, 861, 932
Hpy188III	TCNNGA	3 cut(s)	102, 193, 296
Hpy8I	GTNNAC	3 cut(s)	956, 1054, 1385
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	209, 943, 990, 1077, 1212
HpyCH4III	ACNGT	5 cut(s)	262, 395, 592, 852, 1051
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	8 cut(s)	31, 141, 239, 628, 700, 727, 1235, 1244
HpyF3I	CTNAG	4 cut(s)	251, 707, 858, 1004
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	385, 1104, 1115, 1238
HspAI	GCGC	1 cut(s)	1247
Kzo9I	GATC	2 cut(s)	186, 195
LmnI	GCTCC	4 cut(s)	700, 994, 1048, 1136
Lsp1109I	GCAGC	5 cut(s)	43, 46, 595, 715, 819
LweI	GCATC	9 cut(s)	95, 131, 220, 407, 427, 542, 730, 1247, 1274
MaeI	CTAG	3 cut(s)	1158, 1182, 1269
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	188, 197
MboI	GATC	2 cut(s)	186, 195
MboII	GAAGA	9 cut(s)	60, 63, 66, 139, 167, 181, 1050, 1088, 1381
MflI	RGATCY	2 cut(s)	186, 195
MluCI	AATT	4 cut(s)	320, 658, 682, 864
MlyI	GAGTC	4 cut(s)	58, 1135, 1219, 1380
MmeI	TCCRAC	2 cut(s)	998, 1070
Mph1103I	ATGCAT	2 cut(s)	1240, 1267
MseI	TTAA	5 cut(s)	246, 470, 507, 642, 1152
MspA1I	CMGCKG	1 cut(s)	706
MspCI	CTTAAG	2 cut(s)	469, 506
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	6 cut(s)	184, 357, 579, 600, 1251, 1275
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	5 cut(s)	357, 579, 600, 1251, 1275
MvnI	CGCG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	8 cut(s)	31, 141, 239, 628, 700, 727, 1235, 1244
NciI	CCSGG	1 cut(s)	184
NcoI	CCATGG	1 cut(s)	1111
NdeII	GATC	2 cut(s)	186, 195
NlaIII	CATG	4 cut(s)	385, 1104, 1115, 1238
NlaIV	GGNNCC	2 cut(s)	197, 1230
NmeAIII	GCCGAG	2 cut(s)	184, 870
NsiI	ATGCAT	2 cut(s)	1240, 1267
NspI	RCATGY	1 cut(s)	1238
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	8 cut(s)	65, 117, 157, 565, 585, 595, 634, 782
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	33, 36, 610, 705, 834
PleI	GAGTC	4 cut(s)	57, 1135, 1218, 1380
PpsI	GAGTC	4 cut(s)	57, 1135, 1218, 1380
Psp1406I	AACGTT	1 cut(s)	539
Psp6I	CCWGG	5 cut(s)	355, 577, 598, 1249, 1273
PspGI	CCWGG	5 cut(s)	355, 577, 598, 1249, 1273
PspN4I	GGNNCC	2 cut(s)	197, 1230
PspPI	GGNCC	3 cut(s)	1019, 1228, 1346
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	186, 195
PvuII	CAGCTG	1 cut(s)	706
RsaI	GTAC	2 cut(s)	361, 955
RsaNI	GTAC	2 cut(s)	360, 954
SaqAI	TTAA	5 cut(s)	246, 470, 507, 642, 1152
SatI	GCNGC	5 cut(s)	32, 35, 609, 704, 833
Sau3AI	GATC	2 cut(s)	186, 195
Sau96I	GGNCC	3 cut(s)	1019, 1228, 1346
SchI	GAGTC	4 cut(s)	58, 1135, 1219, 1380
ScrFI	CCNGG	6 cut(s)	184, 357, 579, 600, 1251, 1275
SfaNI	GCATC	9 cut(s)	95, 131, 220, 407, 427, 542, 730, 1247, 1274
SfcI	CTRYAG	2 cut(s)	777, 1014
SinI	GGWCC	1 cut(s)	1019
SmlI	CTYRAG	4 cut(s)	469, 506, 1221, 1300
SmoI	CTYRAG	4 cut(s)	469, 506, 1221, 1300
Sse9I	AATT	4 cut(s)	320, 658, 682, 864
SsiI	CCGC	4 cut(s)	629, 1245, 1317, 1340
SspMI	CTAG	3 cut(s)	1158, 1182, 1269
StyD4I	CCNGG	6 cut(s)	182, 355, 577, 598, 1249, 1273
StyI	CCWWGG	1 cut(s)	1111
TaaI	ACNGT	5 cut(s)	262, 395, 592, 852, 1051
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	4 cut(s)	139, 216, 228, 295
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	4 cut(s)	320, 658, 682, 864
TfiI	GAWTC	8 cut(s)	65, 117, 157, 565, 585, 595, 634, 782
Tru1I	TTAA	5 cut(s)	246, 470, 507, 642, 1152
Tru9I	TTAA	5 cut(s)	246, 470, 507, 642, 1152
TscAI	CASTG	3 cut(s)	259, 468, 595
TseI	GCWGC	5 cut(s)	31, 34, 608, 703, 832
TspDTI	ATGAA	2 cut(s)	1381, 1388
TspGWI	ACGGA	3 cut(s)	129, 202, 895
TspRI	CASTG	3 cut(s)	259, 468, 595
Vha464I	CTTAAG	2 cut(s)	469, 506
VpaK11BI	GGWCC	1 cut(s)	1019
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	1238
XspI	CTAG	3 cut(s)	1158, 1182, 1269
Zsp2I	ATGCAT	2 cut(s)	1240, 1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.