AT1G10880

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004921
Physical Location & Seq
Reverse (-)
3625623 .. 3627082
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10880.1

Sequence Viewer

Length: 1161 bp
ATGAAGAAGCAAAAGATTACAACCTTTGTTAAAGAACTCAACTTACGGATGAATTCGAAGAAAGAACCGATAAGTCTCCGATACATTCACATCCTTGGCACCGTTGTCTTCTTCTCCTCTGTCTCCTCTCTCGTCATCCTCCTTGCTTTTTACCTTAACCAACGCCTCCAAACATCACTCTTCCTCGTCGAAGATTATCACACTCTCTCCTCAAATCCTCTCACTTCTCCTTCCCTCTCTCCTCCTCCTTCTCCTTCTCCTCGCAGCTCTGGTAGTAATATTGCAGACGAAGAGCTGATGTGGCGAGCAGCGATGGCCCCACGCAGCCCCATGAAGAATGAGACCCATCCAAAGGTTGCGTTCATGTTTCTAACGAGGTGGAATTTGCCGTTGTCCCCTCTTTGGGAAATGTTCTTCAAAGGTCATGAAGGGTTTTATTCCATCTACGTTCATACCTCGCCGGAGTTCACTCAAGAGCCGCCGGAATCTTCAGTATTTTACAAGAAACGGATACCAAGCAAGGCCGTTGAATGGGGAAAATGTTCGATGATGGATGCAGAGAAGCGTCTTATATCTCATGCCCTACTAGAACCTTCCAACGCACGCTTCGTCCTCCTCTCCGAGACTTGTATCCCTCTCTTCAACTTCACCACAATCTACACTTACCTCACGCGCTCCACTCGCTCTTTCCTCGGCTCATTCGACGACCCAAGGCCCATGGGCCGAGGCCGTTACACCCCTAAAATGCTCCCACACGTGTCGCTCTCTGACTGGCGGAAAGGAAACCAATGGTTCGAAATCTCACGTAGAGTCGCCGCCGAGATCGTCTCTGATCGCCGGTACTACGCCGTCTTTAAGGATCACTGCCGACCGCCGTGTTATATCGACGAGCATTATCTTCCGACGTTAGTTAACAAGATTTGTCCGGAGATGAATTCGAACCGGACAGTGACGTGGGTTGATTGGTCAAGAGGTGGGTCCCATCCAGCGAGGTTTGTGAGGAAAGATATTCGGGTCGGGTTCTTGGATCGGATCCGGTTCGGTTCGAATTGTAGCTACGAAGGTGAGGTGACGAATGTGTGTTTTCTTTTCGGGAGGAAGTTTCATGTGAGCACCCTCGAGCCTCTCATGAAGATTGCTCCATATTTGTTTGGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

386

Amino Acids

44.7

Weight (kDa)

9.55

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 119 - 346 1.3e-77 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccII CGCG 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 925
AciI CCGC 4 cut(s) 479, 775, 816, 872
AclWI GGATC 4 cut(s) 867, 1027, 1035, 1040
AcsI RAATTY 4 cut(s) 52, 382, 934, 1155
AcuI CTGAAG 1 cut(s) 474
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 1 cut(s) 842
AfiI CCNNNNNNNGG 4 cut(s) 352, 402, 403, 531
AflIII ACRYGT 2 cut(s) 754, 756
AgsI TTSAA 3 cut(s) 418, 530, 643
AjiI CACGTC 1 cut(s) 954
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 3 cut(s) 267, 295, 1056
AluI AGCT 3 cut(s) 267, 295, 1056
Alw21I GWGCWC 1 cut(s) 1115
Alw26I GTCTC 5 cut(s) 80, 127, 335, 617, 832
AlwI GGATC 4 cut(s) 867, 1027, 1035, 1040
Ama87I CYCGRG 1 cut(s) 1118
Aor13HI TCCGGA 1 cut(s) 925
AoxI GGCC 5 cut(s) 315, 522, 713, 721, 727
ApeKI GCWGC 3 cut(s) 264, 308, 324
ApoI RAATTY 4 cut(s) 52, 382, 934, 1155
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 4 cut(s) 316, 714, 721, 978
AsuHPI GGTGA 3 cut(s) 640, 1076, 1081
AsuII TTCGAA 4 cut(s) 56, 795, 938, 1046
AvaI CYCGRG 1 cut(s) 1118
AvaII GGWCC 1 cut(s) 978
BamHI GGATCC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 1115
BbvI GCAGC 3 cut(s) 276, 320, 336
BccI CCATC 5 cut(s) 307, 354, 449, 544, 990
BceAI ACGGC 5 cut(s) 373, 509, 714, 833, 859
BciVI GTATCC 2 cut(s) 504, 641
BcoDI GTCTC 5 cut(s) 80, 127, 335, 617, 832
BfaI CTAG 1 cut(s) 587
BfuI GTATCC 2 cut(s) 504, 641
BisI GCNGC 5 cut(s) 265, 309, 325, 479, 816
BlsI GCNGC 5 cut(s) 266, 310, 326, 480, 817
Bme18I GGWCC 1 cut(s) 978
BmeT110I CYCGRG 1 cut(s) 1118
BmgBI CACGTC 1 cut(s) 954
BmgT120I GGNCC 4 cut(s) 316, 714, 721, 978
BmiI GGNNCC 5 cut(s) 100, 318, 979, 980, 1034
BmsI GCATC 1 cut(s) 544
BpiI GAAGAC 1 cut(s) 100
BplI GAGNNNNNCTC 2 cut(s) 812, 844
Bpu14I TTCGAA 4 cut(s) 56, 795, 938, 1046
BpuEI CTTGAG 1 cut(s) 456
BsaAI YACGTR 2 cut(s) 757, 806
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 5 cut(s) 94, 691, 710, 717, 724
BsaWI WCCGGW 3 cut(s) 925, 942, 1035
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 4 cut(s) 352, 402, 403, 531
Bse118I RCCGGY 1 cut(s) 837
Bse1I ACTGG 1 cut(s) 776
BseAI TCCGGA 1 cut(s) 925
BseDI CCNNGG 5 cut(s) 94, 691, 710, 717, 724
BseGI GGATG 6 cut(s) 54, 90, 135, 346, 559, 982
BseLI CCNNNNNNNGG 4 cut(s) 352, 402, 403, 531
BseNI ACTGG 1 cut(s) 776
BseRI GAGGAG 7 cut(s) 106, 115, 199, 231, 234, 249, 605
BseXI GCAGC 3 cut(s) 276, 320, 336
Bsh1236I CGCG 1 cut(s) 673
Bsh1285I CGRYCG 1 cut(s) 872
BshFI GGCC 5 cut(s) 317, 524, 715, 723, 729
BshNI GGYRCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 872
BsiHKAI GWGCWC 1 cut(s) 1115
BsiHKCI CYCGRG 1 cut(s) 1118
BsiSI CCGG 6 cut(s) 461, 482, 838, 926, 943, 1036
BslFI GGGAC 2 cut(s) 379, 964
BslI CCNNNNNNNGG 4 cut(s) 352, 402, 403, 531
BsmAI GTCTC 5 cut(s) 80, 127, 335, 617, 832
BsmBI CGTCTC 1 cut(s) 832
BsmFI GGGAC 2 cut(s) 379, 964
BsnI GGCC 5 cut(s) 317, 524, 715, 723, 729
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 1 cut(s) 1118
Bsp119I TTCGAA 4 cut(s) 56, 795, 938, 1046
Bsp1286I GDGCHC 1 cut(s) 1115
Bsp13I TCCGGA 1 cut(s) 925
Bsp143I GATC 5 cut(s) 822, 832, 859, 1027, 1032
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 4 cut(s) 479, 775, 816, 872
BspANI GGCC 5 cut(s) 317, 524, 715, 723, 729
BspEI TCCGGA 1 cut(s) 925
BspFNI CGCG 1 cut(s) 673
BspHI TCATGA 2 cut(s) 424, 1128
BspLI GGNNCC 5 cut(s) 100, 318, 979, 980, 1034
BspPI GGATC 4 cut(s) 867, 1027, 1035, 1040
BspQI GCTCTTC 1 cut(s) 285
BspT104I TTCGAA 4 cut(s) 56, 795, 938, 1046
BspT107I GGYRCC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 837
BsrI ACTGG 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 837
BssECI CCNNGG 5 cut(s) 94, 691, 710, 717, 724
BssMI GATC 5 cut(s) 822, 832, 859, 1027, 1032
BssT1I CCWWGG 3 cut(s) 94, 710, 717
Bst4CI ACNGT 2 cut(s) 103, 949
Bst6I CTCTTC 3 cut(s) 185, 285, 644
BstBAI YACGTR 2 cut(s) 757, 806
BstBI TTCGAA 4 cut(s) 56, 795, 938, 1046
BstC8I GCNNGC 2 cut(s) 306, 604
BstDSI CCRYGG 1 cut(s) 717
BstF5I GGATG 6 cut(s) 54, 90, 135, 346, 559, 982
BstFNI CGCG 1 cut(s) 673
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 5 cut(s) 825, 835, 862, 1030, 1035
BstMAI GTCTC 5 cut(s) 80, 127, 335, 617, 832
BstMBI GATC 5 cut(s) 822, 832, 859, 1027, 1032
BstMCI CGRYCG 1 cut(s) 872
BstMWI GCNNNNNNNGC 3 cut(s) 301, 314, 681
BstUI CGCG 1 cut(s) 673
BstV1I GCAGC 3 cut(s) 276, 320, 336
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 1032
BstYI RGATCY 1 cut(s) 1032
BsuI GTATCC 2 cut(s) 504, 641
BsuRI GGCC 5 cut(s) 317, 524, 715, 723, 729
BtgI CCRYGG 1 cut(s) 717
BtgZI GCGATG 1 cut(s) 326
BtrI CACGTC 1 cut(s) 954
BtsCI GGATG 6 cut(s) 54, 90, 135, 346, 559, 982
BtsI GCAGTG 1 cut(s) 862
BtsIMutI CAGTG 2 cut(s) 862, 954
Cac8I GCNNGC 2 cut(s) 306, 604
CciI TCATGA 2 cut(s) 424, 1128
CfoI GCGC 1 cut(s) 675
Cfr10I RCCGGY 1 cut(s) 837
Cfr13I GGNCC 4 cut(s) 316, 714, 721, 978
CseI GACGC 1 cut(s) 554
Csp6I GTAC 1 cut(s) 841
CviAII CATG 7 cut(s) 331, 364, 425, 578, 718, 1106, 1129
CviQI GTAC 1 cut(s) 841
DpnI GATC 5 cut(s) 824, 834, 861, 1029, 1034
DpnII GATC 5 cut(s) 822, 832, 859, 1027, 1032
Eam1104I CTCTTC 3 cut(s) 185, 285, 644
EarI CTCTTC 3 cut(s) 185, 285, 644
EciI GGCGGA 1 cut(s) 790
Eco130I CCWWGG 3 cut(s) 94, 710, 717
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 978
Eco57I CTGAAG 1 cut(s) 474
Eco72I CACGTG 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 1118
EcoO109I RGGNCCY 1 cut(s) 978
EcoRI GAATTC 2 cut(s) 52, 934
EcoT14I CCWWGG 3 cut(s) 94, 710, 717
ErhI CCWWGG 3 cut(s) 94, 710, 717
Esp3I CGTCTC 1 cut(s) 832
FaeI CATG 7 cut(s) 334, 367, 428, 581, 721, 1109, 1132
FaqI GGGAC 2 cut(s) 379, 964
FatI CATG 7 cut(s) 330, 363, 424, 577, 717, 1105, 1128
Fnu4HI GCNGC 5 cut(s) 265, 309, 325, 479, 816
FokI GGATG 6 cut(s) 61, 77, 122, 333, 566, 969
Fsp4HI GCNGC 5 cut(s) 265, 309, 325, 479, 816
FspBI CTAG 1 cut(s) 587
GlaI GCGC 1 cut(s) 674
GluI GCNGC 5 cut(s) 265, 309, 325, 479, 816
HaeIII GGCC 5 cut(s) 317, 524, 715, 723, 729
HapII CCGG 6 cut(s) 461, 482, 838, 926, 943, 1036
HgaI GACGC 1 cut(s) 554
HhaI GCGC 1 cut(s) 675
Hin1II CATG 7 cut(s) 334, 367, 428, 581, 721, 1109, 1132
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 913
HindII GTYRAC 1 cut(s) 913
HinfI GANTC 2 cut(s) 485, 810
HpaI GTTAAC 1 cut(s) 913
HpaII CCGG 6 cut(s) 461, 482, 838, 926, 943, 1036
HphI GGTGA 3 cut(s) 640, 1076, 1081
Hpy166II GTNNAC 2 cut(s) 468, 913
Hpy188I TCNGA 6 cut(s) 80, 622, 769, 832, 903, 1032
Hpy188III TCNNGA 6 cut(s) 425, 473, 926, 969, 1093, 1129
Hpy8I GTNNAC 2 cut(s) 468, 913
Hpy99I CGWCG 4 cut(s) 191, 707, 890, 907
HpyAV CCTTC 6 cut(s) 240, 258, 264, 422, 603, 1055
HpyCH4III ACNGT 2 cut(s) 103, 949
HpyCH4IV ACGT 5 cut(s) 447, 756, 805, 905, 953
HpyCH4V TGCA 2 cut(s) 284, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 314, 681
HpySE526I ACGT 5 cut(s) 447, 756, 805, 905, 953
Hsp92II CATG 7 cut(s) 334, 367, 428, 581, 721, 1109, 1132
HspAI GCGC 1 cut(s) 673
KflI GGGWCCC 1 cut(s) 978
Kpn2I TCCGGA 1 cut(s) 925
KspAI GTTAAC 1 cut(s) 913
Kzo9I GATC 5 cut(s) 822, 832, 859, 1027, 1032
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 680, 753, 1144
LpnPI CCDG 9 cut(s) 255, 474, 495, 757, 851, 939, 956, 999, 1049
Lsp1109I GCAGC 3 cut(s) 276, 320, 336
LweI GCATC 1 cut(s) 544
MaeI CTAG 1 cut(s) 587
MaeII ACGT 5 cut(s) 447, 756, 805, 905, 953
MaeIII GTNAC 3 cut(s) 731, 949, 1069
MalI GATC 5 cut(s) 824, 834, 861, 1029, 1034
MboI GATC 5 cut(s) 822, 832, 859, 1027, 1032
MflI RGATCY 1 cut(s) 1032
MhlI GDGCHC 1 cut(s) 1115
MluCI AATT 5 cut(s) 52, 382, 934, 1048, 1155
MlyI GAGTC 1 cut(s) 819
MmeI TCCRAC 2 cut(s) 621, 926
MroI TCCGGA 1 cut(s) 925
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 5 cut(s) 30, 156, 855, 912, 1159
MspI CCGG 6 cut(s) 461, 482, 838, 926, 943, 1036
MvnI CGCG 1 cut(s) 673
MwoI GCNNNNNNNGC 3 cut(s) 301, 314, 681
NcoI CCATGG 1 cut(s) 717
NdeII GATC 5 cut(s) 822, 832, 859, 1027, 1032
NlaIII CATG 7 cut(s) 334, 367, 428, 581, 721, 1109, 1132
NlaIV GGNNCC 5 cut(s) 100, 318, 979, 980, 1034
NmeAIII GCCGAG 3 cut(s) 672, 749, 844
NmuCI GTSAC 2 cut(s) 949, 1069
NspV TTCGAA 4 cut(s) 56, 795, 938, 1046
PaeR7I CTCGAG 1 cut(s) 1118
PagI TCATGA 2 cut(s) 424, 1128
PciSI GCTCTTC 1 cut(s) 285
PcsI WCGNNNNNNNCGW 2 cut(s) 606, 699
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 1 cut(s) 485
PkrI GCNGC 5 cut(s) 266, 310, 326, 480, 817
PleI GAGTC 1 cut(s) 818
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 1 cut(s) 818
Ppu21I YACGTR 2 cut(s) 757, 806
PpuMI RGGWCCY 1 cut(s) 978
Psp5II RGGWCCY 1 cut(s) 978
PspCI CACGTG 1 cut(s) 757
PspN4I GGNNCC 5 cut(s) 100, 318, 979, 980, 1034
PspPI GGNCC 4 cut(s) 316, 714, 721, 978
PspPPI RGGWCCY 1 cut(s) 978
PspXI VCTCGAGB 1 cut(s) 1118
PsrI GAACNNNNNNTAC 2 cut(s) 27, 59
PsuI RGATCY 1 cut(s) 1032
RsaI GTAC 1 cut(s) 842
RsaNI GTAC 1 cut(s) 841
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 5 cut(s) 30, 156, 855, 912, 1159
SatI GCNGC 5 cut(s) 265, 309, 325, 479, 816
Sau3AI GATC 5 cut(s) 822, 832, 859, 1027, 1032
Sau96I GGNCC 4 cut(s) 316, 714, 721, 978
SchI GAGTC 1 cut(s) 819
SduI GDGCHC 1 cut(s) 1115
SfaNI GCATC 1 cut(s) 544
Sfr274I CTCGAG 1 cut(s) 1118
SfuI TTCGAA 4 cut(s) 56, 795, 938, 1046
SinI GGWCC 1 cut(s) 978
SlaI CTCGAG 1 cut(s) 1118
SmlI CTYRAG 2 cut(s) 471, 1118
SmoI CTYRAG 2 cut(s) 471, 1118
Sse9I AATT 5 cut(s) 52, 382, 934, 1048, 1155
SsiI CCGC 4 cut(s) 479, 775, 816, 872
SspI AATATT 1 cut(s) 280
SspMI CTAG 1 cut(s) 587
StyI CCWWGG 3 cut(s) 94, 710, 717
TaaI ACNGT 2 cut(s) 103, 949
TaiI ACGT 5 cut(s) 450, 759, 808, 908, 956
TaqI TCGA 9 cut(s) 56, 189, 545, 702, 795, 885, 938, 1046, 1119
TasI AATT 5 cut(s) 52, 382, 934, 1048, 1155
TauI GCSGC 2 cut(s) 481, 818
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 5 cut(s) 30, 156, 855, 912, 1159
Tru9I TTAA 5 cut(s) 30, 156, 855, 912, 1159
TscAI CASTG 2 cut(s) 869, 954
TseFI GTSAC 2 cut(s) 949, 1069
TseI GCWGC 3 cut(s) 264, 308, 324
Tsp45I GTSAC 2 cut(s) 949, 1069
TspDTI ATGAA 9 cut(s) 17, 65, 347, 352, 440, 441, 947, 1094, 1145
TspGWI ACGGA 2 cut(s) 61, 523
TspRI CASTG 2 cut(s) 869, 954
VpaK11BI GGWCC 1 cut(s) 978
XapI RAATTY 4 cut(s) 52, 382, 934, 1155
XhoI CTCGAG 1 cut(s) 1118
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.