Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004921

Physical Location & Seq

Genomic Coordinates Forward (+)

17328643 .. 17330681

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCTTTCAGCAATGGGAAAGGAACACCGAAAATCTCAACCAATTCTAAAGCTTTTGCTCTCCTATATGCAGTTTAGCCATGCCTTTGAGCTTGTGTTTTTTGTCGTTGGTTTGTGCCTTGGAGTCATGGTCAGTTTATACTGCAAGACCTTCCCATTCAAGTTACAAACCACTGTAAATGTTTTCTCTTCGTCACCACTGTCGCTGTCGCTGCCAACTCCAGCATCGCAATTGCTCCCACAACCACCCTCACTGTTGCCAACTCCAACATCACAATTGCTCCCACAACCCTGCTCACCACCGCCTCTCCCATTAGCACCAACATCACAATTGCTCCCACAACCCTGCTCACCACCGCCTCTCCCATTAGCAGACTTGGGTACTGAGGTTACATCTAAAATTGAGGCATTTATGTTGCACAAGATGGATGATGATGATGAGTTGCTTTGGAGGGCATCATTGGTTCCAAGGATTAGAAAGTTTCCTTTTAACCATGTGCCTAGAGTTGCCTTCATGTTCTTGACAAAGGGAAATATACCTTTGGCCCCATTGTGGGAAATGTTCTTCAAAGGTCATGAAGGACTTTATACCATATATGTTCACACTCATCCTTCCTATGTAGATTCATGGCCTCAGAACTCTGTTTTCTATGGAAGGAGAATTCCAAGCAAGGAAGTTGAATGGGGAAAACCAACAATGATTGATGGTGAGAGACGCCTACTAGCAAGTGCTCTCTTGGACTTCTCTAATGAGAGATTTGTGTTACTGTCCGAGTCTTGTATCCCATTGTTCAACTTCACCACAATTTACAGCTACCTCGTGAATTCCAGTGAGAGCAATATTGGTTCATATGACGACCCGAGGAAGGTTGGTCGGGGCAGATACAATCCCAAAATGTGGCCTGCAATTAACATATCGGATTGGCGCAAAGGCTCCCAGTGGTTTGAGGCCAGTCGAAAGCTTGCAATTGAGATCATATCAGACACCAAATACTACCCCATATTCAAAGAGCATTGCAATCCTCCTTGTTACATGGATGAACATTACATCCCTACCCTAGTCAACATTCTTGGCGTCGAAGACAACTCGAATCGAAGCATAACTTGGGTTGATTGGTCCAGGGGTGGCCCTCACCCTAGAAGATTTGGGAGGAATGATGTTTCATATGAGTTTCTGAATCAAATAAGGTTTGGCACCAATTGCACTTGTAATGGTATTAATGCCACCACTTGTATGTGCTTTTTATTTGCTAGGAAGTTCATGGGAGACACTCTGCGACCTCTCTTGCAAATTGCACCCATTTTGCTAGGTTCCGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

441

Amino Acids

50.0

Weight (kDa)

8.67

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10880
fragaria_vesca	FvH4_4g26974 FvH4_5g11820
malus_domestica	MD14G1228300.v1.1 MD16G1039600.v1.1
prunus_persica	Prupe.1G314500_v2.0.a1 Prupe.5G223400_v2.0.a1
pyrus_communis	pycom14g18970
rosa_chinensis	RchiOBHm_Chr4g0434761 RchiOBHm_Chr7g0185781
rosa_laevigata	RLG00000004884 RLG00000006651
rosa_multiflora	Rmu_sc0002121.1_g000004 Rmu_sc0011187.1_g000001 Rmu_sc0017904.1_g000003 Rmu_sc0017905.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268630 Rroxscaffold_5G00375970
rosa_rugosa	Rorug04G0278200 Rorug06G0471200.1
rosa_samantha	Rh4AG334600 Rh4BG343200 Rh4CG357600 Rh4DG336900 Rh7AG071100 Rh7BG076700 Rh7CG076700 Rh7DG076600
rosa_wichuraiana	Rw4G029180 Rw7G006390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1193
AccB7I	CCANNNNNTGG	1 cut(s)	897
AciI	CCGC	2 cut(s)	302, 356
AcsI	RAATTY	2 cut(s)	660, 823
AcyI	GRCGYC	2 cut(s)	715, 1074
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	4 cut(s)	552, 553, 865, 897
AgsI	TTSAA	5 cut(s)	160, 568, 680, 793, 1006
AjnI	CCWGG	1 cut(s)	1118
AjuI	GAANNNNNNNTTGG	2 cut(s)	1087, 1119
AloI	GAACNNNNNNTCC	2 cut(s)	1032, 1064
AluBI	AGCT	4 cut(s)	52, 91, 813, 961
AluI	AGCT	4 cut(s)	52, 91, 813, 961
Alw21I	GWGCWC	1 cut(s)	733
Alw26I	GTCTC	2 cut(s)	706, 1260
Ama87I	CYCGRG	1 cut(s)	859
AoxI	GGCC	5 cut(s)	543, 629, 899, 948, 1126
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	2 cut(s)	660, 823
AseI	ATTAAT	1 cut(s)	1218
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	544, 1116, 1127
AsuHPI	GGTGA	6 cut(s)	186, 288, 342, 719, 790, 1124
AvaI	CYCGRG	1 cut(s)	859
AvaII	GGWCC	1 cut(s)	1116
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanI	GGYRCC	1 cut(s)	1193
BauI	CACGAG	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	1086
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	2 cut(s)	418, 698
BciT130I	CCWGG	1 cut(s)	1120
BciVI	GTATCC	1 cut(s)	791
BcoDI	GTCTC	2 cut(s)	706, 1260
BfaI	CTAG	6 cut(s)	501, 722, 1058, 1137, 1251, 1307
BfuI	GTATCC	1 cut(s)	791
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	1120
Bme18I	GGWCC	1 cut(s)	1116
BmeT110I	CYCGRG	1 cut(s)	859
BmgT120I	GGNCC	3 cut(s)	544, 1116, 1127
BmiI	GGNNCC	5 cut(s)	465, 546, 934, 1195, 1312
BmrFI	CCNGG	1 cut(s)	1120
BmrI	ACTGGG	1 cut(s)	931
BmsI	GCATC	2 cut(s)	233, 464
BmuI	ACTGGG	1 cut(s)	931
BpiI	GAAGAC	1 cut(s)	1086
BpmI	CTGGAG	1 cut(s)	204
BsaHI	GRCGYC	2 cut(s)	715, 1074
BsaJI	CCNNGG	4 cut(s)	118, 467, 860, 1119
Bsc4I	CCNNNNNNNGG	4 cut(s)	552, 553, 865, 897
Bse1I	ACTGG	3 cut(s)	828, 937, 951
Bse3DI	GCAATG	2 cut(s)	18, 1012
BseBI	CCWGG	1 cut(s)	1120
BseDI	CCNNGG	4 cut(s)	118, 467, 860, 1119
BseGI	GGATG	4 cut(s)	433, 607, 1042, 1047
BseLI	CCNNNNNNNGG	4 cut(s)	552, 553, 865, 897
BseMI	GCAATG	2 cut(s)	18, 1012
BseMII	CTCAG	2 cut(s)	375, 647
BseNI	ACTGG	3 cut(s)	828, 937, 951
BseXI	GCAGC	1 cut(s)	198
BshFI	GGCC	5 cut(s)	545, 631, 901, 950, 1128
BshNI	GGYRCC	1 cut(s)	1193
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	859
BslI	CCNNNNNNNGG	4 cut(s)	552, 553, 865, 897
BsmAI	GTCTC	2 cut(s)	706, 1260
BsmBI	CGTCTC	1 cut(s)	706
BsnI	GGCC	5 cut(s)	545, 631, 901, 950, 1128
BsoBI	CYCGRG	1 cut(s)	859
Bsp1286I	GDGCHC	1 cut(s)	733
Bsp143I	GATC	1 cut(s)	972
BspACI	CCGC	2 cut(s)	302, 356
BspANI	GGCC	5 cut(s)	545, 631, 901, 950, 1128
BspCNI	CTCAG	2 cut(s)	376, 646
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	5 cut(s)	465, 546, 934, 1195, 1312
BspT107I	GGYRCC	1 cut(s)	1193
BsrDI	GCAATG	2 cut(s)	18, 1012
BsrI	ACTGG	3 cut(s)	828, 937, 951
BssECI	CCNNGG	4 cut(s)	118, 467, 860, 1119
BssMI	GATC	1 cut(s)	972
BssNI	GRCGYC	2 cut(s)	715, 1074
BssSI	CACGAG	1 cut(s)	818
BssT1I	CCWWGG	2 cut(s)	118, 467
Bst2BI	CACGAG	1 cut(s)	818
Bst2UI	CCWGG	1 cut(s)	1120
Bst4CI	ACNGT	4 cut(s)	175, 201, 255, 768
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	2 cut(s)	715, 1074
BstAPI	GCANNNNNTGC	1 cut(s)	1200
BstC8I	GCNNGC	2 cut(s)	903, 963
BstDEI	CTNAG	2 cut(s)	384, 633
BstF5I	GGATG	4 cut(s)	433, 607, 1042, 1047
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	1 cut(s)	975
BstMAI	GTCTC	2 cut(s)	706, 1260
BstMBI	GATC	1 cut(s)	972
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 1200
BstNI	CCWGG	1 cut(s)	1120
BstSCI	CCNGG	1 cut(s)	1118
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	1086
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	5 cut(s)	545, 631, 901, 950, 1128
BtgZI	GCGATG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	433, 607, 1042, 1047
BtsIMutI	CAGTG	5 cut(s)	171, 197, 251, 835, 944
Cac8I	GCNNGC	2 cut(s)	903, 963
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	1 cut(s)	927
Cfr13I	GGNCC	3 cut(s)	544, 1116, 1127
CseI	GACGC	2 cut(s)	723, 1063
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	8 cut(s)	80, 127, 494, 514, 575, 627, 1033, 1261
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	2 cut(s)	384, 633
DpnI	GATC	1 cut(s)	974
DpnII	GATC	1 cut(s)	972
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	118, 467
Eco47I	GGWCC	1 cut(s)	1116
Eco88I	CYCGRG	1 cut(s)	859
EcoRI	GAATTC	2 cut(s)	660, 823
EcoRII	CCWGG	1 cut(s)	1118
EcoT14I	CCWWGG	2 cut(s)	118, 467
ErhI	CCWWGG	2 cut(s)	118, 467
Esp3I	CGTCTC	1 cut(s)	706
FaeI	CATG	8 cut(s)	83, 130, 497, 517, 578, 630, 1036, 1264
FalI	AAGNNNNNCTT	2 cut(s)	1087, 1119
FatI	CATG	8 cut(s)	79, 126, 493, 513, 574, 626, 1032, 1260
FauNDI	CATATG	2 cut(s)	850, 1165
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	4 cut(s)	440, 594, 1034, 1049
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	6 cut(s)	501, 722, 1058, 1137, 1251, 1307
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	5 cut(s)	545, 631, 901, 950, 1128
HgaI	GACGC	2 cut(s)	723, 1063
HhaI	GCGC	1 cut(s)	927
Hin1I	GRCGYC	2 cut(s)	715, 1074
Hin1II	CATG	8 cut(s)	83, 130, 497, 517, 578, 630, 1036, 1264
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HindIII	AAGCTT	2 cut(s)	50, 959
HinfI	GANTC	5 cut(s)	123, 623, 773, 1090, 1177
HphI	GGTGA	6 cut(s)	186, 288, 342, 719, 790, 1124
Hpy166II	GTNNAC	2 cut(s)	601, 1063
Hpy188I	TCNGA	5 cut(s)	636, 772, 919, 982, 1176
Hpy188III	TCNNGA	3 cut(s)	520, 575, 820
Hpy8I	GTNNAC	2 cut(s)	601, 1063
Hpy99I	CGWCG	1 cut(s)	1079
HpyAV	CCTTC	6 cut(s)	160, 520, 572, 621, 648, 859
HpyCH4III	ACNGT	4 cut(s)	175, 201, 255, 768
HpyCH4V	TGCA	9 cut(s)	70, 144, 418, 905, 965, 1017, 1203, 1288, 1295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 1200
HpyF3I	CTNAG	2 cut(s)	384, 633
Hsp92I	GRCGYC	2 cut(s)	715, 1074
Hsp92II	CATG	8 cut(s)	83, 130, 497, 517, 578, 630, 1036, 1264
HspAI	GCGC	1 cut(s)	925
Kzo9I	GATC	1 cut(s)	972
LmnI	GCTCC	4 cut(s)	240, 285, 339, 938
LpnPI	CCDG	9 cut(s)	234, 304, 358, 841, 915, 950, 964, 1105, 1132
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	2 cut(s)	233, 464
MaeI	CTAG	6 cut(s)	501, 722, 1058, 1137, 1251, 1307
MaeIII	GTNAC	5 cut(s)	162, 192, 388, 762, 1028
MalI	GATC	1 cut(s)	974
MboI	GATC	1 cut(s)	972
MboII	GAAGA	4 cut(s)	180, 556, 1091, 1152
MfeI	CAATTG	5 cut(s)	230, 275, 329, 966, 1198
MhlI	GDGCHC	1 cut(s)	733
MlyI	GAGTC	2 cut(s)	132, 782
MmeI	TCCRAC	1 cut(s)	290
MseI	TTAA	3 cut(s)	489, 909, 1218
MslI	CAYNNNNRTG	1 cut(s)	1232
MspR9I	CCNGG	1 cut(s)	1120
MunI	CAATTG	5 cut(s)	230, 275, 329, 966, 1198
MvaI	CCWGG	1 cut(s)	1120
MwoI	GCNNNNNNNGC	2 cut(s)	211, 1200
NdeI	CATATG	2 cut(s)	850, 1165
NdeII	GATC	1 cut(s)	972
NlaIII	CATG	8 cut(s)	83, 130, 497, 517, 578, 630, 1036, 1264
NlaIV	GGNNCC	5 cut(s)	465, 546, 934, 1195, 1312
NmuCI	GTSAC	1 cut(s)	192
PagI	TCATGA	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	623, 1090, 1177
PflMI	CCANNNNNTGG	1 cut(s)	897
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	2 cut(s)	131, 781
PpsI	GAGTC	2 cut(s)	131, 781
PshBI	ATTAAT	1 cut(s)	1218
Psp6I	CCWGG	1 cut(s)	1118
PspGI	CCWGG	1 cut(s)	1118
PspN4I	GGNNCC	5 cut(s)	465, 546, 934, 1195, 1312
PspPI	GGNCC	3 cut(s)	544, 1116, 1127
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	1232
SaqAI	TTAA	3 cut(s)	489, 909, 1218
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	972
Sau96I	GGNCC	3 cut(s)	544, 1116, 1127
SchI	GAGTC	2 cut(s)	132, 782
ScrFI	CCNGG	1 cut(s)	1120
SduI	GDGCHC	1 cut(s)	733
SfaNI	GCATC	2 cut(s)	233, 464
SinI	GGWCC	1 cut(s)	1116
SmiMI	CAYNNNNRTG	1 cut(s)	1232
SsiI	CCGC	2 cut(s)	302, 356
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	6 cut(s)	501, 722, 1058, 1137, 1251, 1307
StyD4I	CCNGG	1 cut(s)	1118
StyI	CCWWGG	2 cut(s)	118, 467
TaaI	ACNGT	4 cut(s)	175, 201, 255, 768
TaqI	TCGA	4 cut(s)	955, 1077, 1088, 1093
TfiI	GAWTC	3 cut(s)	623, 1090, 1177
Tru1I	TTAA	3 cut(s)	489, 909, 1218
Tru9I	TTAA	3 cut(s)	489, 909, 1218
TscAI	CASTG	5 cut(s)	178, 204, 258, 835, 944
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	8 cut(s)	502, 591, 615, 837, 1053, 1152, 1249, 1308
TspGWI	ACGGA	1 cut(s)	1303
TspRI	CASTG	5 cut(s)	178, 204, 258, 835, 944
Van91I	CCANNNNNTGG	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	1116
VspI	ATTAAT	1 cut(s)	1218
XapI	RAATTY	2 cut(s)	660, 823
XspI	CTAG	6 cut(s)	501, 722, 1058, 1137, 1251, 1307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.