Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011187.1

Orthogroup ID

OG0004921

Physical Location & Seq

Genomic Coordinates Reverse (-)

1752 .. 3257

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgatcagcttattctgcaaaaacttcatattcaaattgcaaaccacctcagattctgtctcttcgttcacactaccgacgtcaacatcactgtcgctgcttccgccgccaccctcaccagcgccgatccctttactggattccggtgatgtcgttacatccgatgttgaggctcagacacttctggtgcacaatatggatgatgatcttgagttgttttggcgggcatcgtttgttccgaggattacagagtttccctataaccgtgtgcctaaagttgctttcatgttcttgacaaagggtcctatacctctagccccattgtgggaaatgttcttcaaagaccatcaaggactttacaacatatattttcaccctcatccatcctatgtagaatcgtggcccaaaaattctgttttctatcgaacaagaattccaagcaagcaagttgaatggggaaaaccaaccatgattgacgccgagagacgtctactagcgagtgccctccttgacttctctaatgaacgattcgtgttgttgtccgagacttgcatcccactattcaacttcactacagtatacaactacctcatgaattccaataagagctttttagcttcctatgatgatccaaggaaagttggccgtggcagatacaatccccaaatggatcctacagtaacaatatcagattggcgaaaagggtcacaatggttcgaggtcaaccgcaaacttgcaatagagatcatatcagataccaagtactaccccatattcaaaaagtattgcagtcctccttgctacatggatgagcattacatccctaccctagtgaacattatcggccccggtcacaactcaaacaggaccgttacttgggttgattggtccaagagtggtccgcaccctggaagatttgggaggaatggtgtttcagatgaattgctgaatcgaataaggtttggtactaatggtacctgtgatggtgatgttaatacaaccagttctatgtgctttttgtttgctaggaagttcatgccggacactctgcaacctctcttgcaaattgcacccgtgttgctaggttccatttctcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

366

Amino Acids

41.85

Weight (kDa)

8.13

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10880
fragaria_vesca	FvH4_4g26974 FvH4_5g11820
malus_domestica	MD14G1228300.v1.1 MD16G1039600.v1.1
prunus_persica	Prupe.1G314500_v2.0.a1 Prupe.5G223400_v2.0.a1
pyrus_communis	pycom14g18970
rosa_chinensis	RchiOBHm_Chr4g0434761 RchiOBHm_Chr7g0185781
rosa_laevigata	RLG00000004884 RLG00000006651
rosa_multiflora	Rmu_sc0002121.1_g000004 Rmu_sc0011187.1_g000001 Rmu_sc0017904.1_g000003 Rmu_sc0017905.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268630 Rroxscaffold_5G00375970
rosa_rugosa	Rorug04G0278200 Rorug06G0471200.1
rosa_samantha	Rh4AG334600 Rh4BG343200 Rh4CG357600 Rh4DG336900 Rh7AG071100 Rh7BG076700 Rh7CG076700 Rh7DG076600
rosa_wichuraiana	Rw4G029180 Rw7G006390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	83, 490
Acc65I	GGTACC	1 cut(s)	974
AccB1I	GGYRCC	1 cut(s)	974
AccI	GTMKAC	2 cut(s)	490, 579
AciI	CCGC	5 cut(s)	104, 107, 223, 727, 902
AclWI	GGATC	4 cut(s)	121, 623, 665, 678
AcoI	YGGCCR	1 cut(s)	643
AcsI	RAATTY	3 cut(s)	409, 432, 595
AcyI	GRCGYC	3 cut(s)	80, 477, 487
AfaI	GTAC	3 cut(s)	764, 967, 976
AfiI	CCNNNNNNNGG	5 cut(s)	136, 324, 325, 876, 908
AgsI	TTSAA	5 cut(s)	34, 340, 452, 565, 778
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	907
AloI	GAACNNNNNNTCC	2 cut(s)	418, 450
AluBI	AGCT	3 cut(s)	9, 609, 617
AluI	AGCT	3 cut(s)	9, 609, 617
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	64, 478, 539
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	4 cut(s)	121, 623, 665, 678
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	3 cut(s)	401, 643, 844
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	97
ApoI	RAATTY	3 cut(s)	409, 432, 595
Asp718I	GGTACC	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	6 cut(s)	302, 402, 845, 867, 888, 899
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	4 cut(s)	108, 158, 365, 998
AvaII	GGWCC	4 cut(s)	302, 867, 888, 899
BaeGI	GKGCMC	2 cut(s)	192, 505
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	974
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	3 cut(s)	354, 391, 977
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	909
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	3 cut(s)	64, 478, 539
BfaI	CTAG	5 cut(s)	314, 494, 830, 1026, 1082
BfmI	CTRYAG	2 cut(s)	573, 675
BfoI	RGCGCY	1 cut(s)	125
BisI	GCNGC	2 cut(s)	98, 107
BlsI	GCNGC	2 cut(s)	99, 108
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	849, 909
Bme18I	GGWCC	4 cut(s)	302, 867, 888, 899
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	6 cut(s)	302, 402, 845, 867, 888, 899
BmiI	GGNNCC	5 cut(s)	303, 672, 847, 976, 1087
BmrFI	CCNGG	2 cut(s)	849, 909
BmsI	GCATC	2 cut(s)	236, 561
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	849
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	3 cut(s)	80, 477, 487
BsaJI	CCNNGG	5 cut(s)	239, 632, 646, 847, 907
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	913, 943
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 324, 325, 876, 908
Bse1I	ACTGG	2 cut(s)	141, 1002
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	909
BseDI	CCNNGG	5 cut(s)	239, 632, 646, 847, 907
BseGI	GGATG	7 cut(s)	158, 205, 379, 383, 552, 814, 819
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	5 cut(s)	136, 324, 325, 876, 908
BseMII	CTCAG	2 cut(s)	63, 188
BseNI	ACTGG	2 cut(s)	141, 1002
BseSI	GKGCMC	2 cut(s)	192, 505
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	3 cut(s)	403, 645, 846
BshNI	GGYRCC	1 cut(s)	974
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	3 cut(s)	144, 849, 1040
BslI	CCNNNNNNNGG	5 cut(s)	136, 324, 325, 876, 908
BsmAI	GTCTC	3 cut(s)	64, 478, 539
BsmBI	CGTCTC	1 cut(s)	478
BsnI	GGCC	3 cut(s)	403, 645, 846
Bsp1286I	GDGCHC	2 cut(s)	192, 505
Bsp143I	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
BspACI	CCGC	5 cut(s)	104, 107, 223, 727, 902
BspANI	GGCC	3 cut(s)	403, 645, 846
BspCNI	CTCAG	2 cut(s)	62, 187
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	5 cut(s)	303, 672, 847, 976, 1087
BspPI	GGATC	4 cut(s)	121, 623, 665, 678
BspT107I	GGYRCC	1 cut(s)	974
BsrI	ACTGG	2 cut(s)	141, 1002
BssECI	CCNNGG	5 cut(s)	239, 632, 646, 847, 907
BssMI	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
BssNAI	GTATAC	1 cut(s)	580
BssNI	GRCGYC	3 cut(s)	80, 477, 487
BssT1I	CCWWGG	1 cut(s)	632
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	5 cut(s)	93, 266, 577, 679, 871
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	3 cut(s)	80, 477, 487
BstC8I	GCNNGC	2 cut(s)	225, 443
BstDEI	CTNAG	2 cut(s)	49, 174
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	7 cut(s)	158, 205, 379, 383, 552, 814, 819
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	6 cut(s)	6, 129, 208, 631, 673, 747
BstMAI	GTCTC	3 cut(s)	64, 478, 539
BstMBI	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 103, 106
BstNI	CCWGG	1 cut(s)	909
BstSCI	CCNGG	2 cut(s)	847, 907
BstSFI	CTRYAG	2 cut(s)	573, 675
BstSLI	GKGCMC	2 cut(s)	192, 505
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	670
BstZ17I	GTATAC	1 cut(s)	580
BsuRI	GGCC	3 cut(s)	403, 645, 846
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	7 cut(s)	158, 205, 379, 383, 552, 814, 819
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	225, 443
CaiI	CAGNNNCTG	1 cut(s)	56
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	6 cut(s)	302, 402, 845, 867, 888, 899
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	763, 966, 975
CviAII	CATG	5 cut(s)	286, 469, 592, 805, 1036
CviJI	RGCY	8 cut(s)	9, 173, 317, 403, 609, 617, 645, 846
CviKI_1	RGCY	8 cut(s)	9, 173, 317, 403, 609, 617, 645, 846
CviQI	GTAC	3 cut(s)	763, 966, 975
DdeI	CTNAG	2 cut(s)	49, 174
DpnI	GATC	6 cut(s)	5, 128, 207, 630, 672, 746
DpnII	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	67
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	4 cut(s)	302, 867, 888, 899
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	2 cut(s)	432, 595
EcoRII	CCWGG	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
Esp3I	CGTCTC	1 cut(s)	478
FaeI	CATG	5 cut(s)	289, 472, 595, 808, 1039
FatI	CATG	5 cut(s)	285, 468, 591, 804, 1035
FauI	CCCGC	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	490, 579
Fnu4HI	GCNGC	2 cut(s)	98, 107
FokI	GGATG	7 cut(s)	145, 212, 366, 370, 539, 806, 821
Fsp4HI	GCNGC	2 cut(s)	98, 107
FspBI	CTAG	5 cut(s)	314, 494, 830, 1026, 1082
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	2 cut(s)	98, 107
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	403, 645, 846
HapII	CCGG	3 cut(s)	144, 849, 1040
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	3 cut(s)	80, 477, 487
Hin1II	CATG	5 cut(s)	289, 472, 595, 808, 1039
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	84, 724
HindII	GTYRAC	2 cut(s)	84, 724
HinfI	GANTC	5 cut(s)	53, 140, 395, 528, 949
HpaII	CCGG	3 cut(s)	144, 849, 1040
HphI	GGTGA	4 cut(s)	108, 158, 365, 998
Hpy166II	GTNNAC	7 cut(s)	69, 84, 190, 491, 580, 724, 835
Hpy188I	TCNGA	8 cut(s)	52, 163, 177, 240, 544, 691, 754, 937
Hpy188III	TCNNGA	3 cut(s)	209, 292, 592
Hpy8I	GTNNAC	7 cut(s)	69, 84, 190, 491, 580, 724, 835
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	5 cut(s)	93, 266, 577, 679, 871
HpyCH4IV	ACGT	2 cut(s)	80, 487
HpyCH4V	TGCA	9 cut(s)	18, 40, 190, 552, 737, 789, 1051, 1063, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 103, 106
HpyF3I	CTNAG	2 cut(s)	49, 174
HpySE526I	ACGT	2 cut(s)	80, 487
Hsp92I	GRCGYC	3 cut(s)	80, 477, 487
Hsp92II	CATG	5 cut(s)	289, 472, 595, 808, 1039
HspAI	GCGC	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	978
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	2 cut(s)	236, 561
MaeI	CTAG	5 cut(s)	314, 494, 830, 1026, 1082
MaeII	ACGT	2 cut(s)	80, 487
MaeIII	GTNAC	5 cut(s)	154, 679, 705, 851, 871
MalI	GATC	6 cut(s)	5, 128, 207, 630, 672, 746
MboI	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
MboII	GAAGA	3 cut(s)	54, 328, 924
MflI	RGATCY	1 cut(s)	670
MhlI	GDGCHC	2 cut(s)	192, 505
MluCI	AATT	6 cut(s)	35, 409, 432, 595, 941, 1065
MseI	TTAA	1 cut(s)	993
MspI	CCGG	3 cut(s)	144, 849, 1040
MspR9I	CCNGG	2 cut(s)	849, 909
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	3 cut(s)	15, 103, 106
NciI	CCSGG	1 cut(s)	849
NdeII	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
NlaIII	CATG	5 cut(s)	289, 472, 595, 808, 1039
NlaIV	GGNNCC	5 cut(s)	303, 672, 847, 976, 1087
NmeAIII	GCCGAG	1 cut(s)	505
NmuCI	GTSAC	2 cut(s)	705, 851
PagI	TCATGA	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	159, 236
PfeI	GAWTC	5 cut(s)	53, 140, 395, 528, 949
PkrI	GCNGC	2 cut(s)	99, 108
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	907
PspGI	CCWGG	1 cut(s)	907
PspN4I	GGNNCC	5 cut(s)	303, 672, 847, 976, 1087
PspPI	GGNCC	6 cut(s)	302, 402, 845, 867, 888, 899
PspPPI	RGGWCCY	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	3 cut(s)	764, 967, 976
RsaNI	GTAC	3 cut(s)	763, 966, 975
SaqAI	TTAA	1 cut(s)	993
SatI	GCNGC	2 cut(s)	98, 107
Sau3AI	GATC	6 cut(s)	3, 126, 205, 628, 670, 744
Sau96I	GGNCC	6 cut(s)	302, 402, 845, 867, 888, 899
ScaI	AGTACT	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	849, 909
SduI	GDGCHC	2 cut(s)	192, 505
SfaNI	GCATC	2 cut(s)	236, 561
SfcI	CTRYAG	2 cut(s)	573, 675
SinI	GGWCC	4 cut(s)	302, 867, 888, 899
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	6 cut(s)	35, 409, 432, 595, 941, 1065
SsiI	CCGC	5 cut(s)	104, 107, 223, 727, 902
SspMI	CTAG	5 cut(s)	314, 494, 830, 1026, 1082
StyD4I	CCNGG	2 cut(s)	847, 907
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	5 cut(s)	93, 266, 577, 679, 871
TaiI	ACGT	2 cut(s)	83, 490
TaqI	TCGA	3 cut(s)	424, 717, 952
TasI	AATT	6 cut(s)	35, 409, 432, 595, 941, 1065
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	5 cut(s)	53, 140, 395, 528, 949
Tru1I	TTAA	1 cut(s)	993
Tru9I	TTAA	1 cut(s)	993
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	2 cut(s)	705, 851
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	2 cut(s)	705, 851
TspDTI	ATGAA	6 cut(s)	16, 274, 537, 608, 954, 1024
TspRI	CASTG	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	4 cut(s)	302, 867, 888, 899
XapI	RAATTY	3 cut(s)	409, 432, 595
XmiI	GTMKAC	2 cut(s)	490, 579
XspI	CTAG	5 cut(s)	314, 494, 830, 1026, 1082
ZraI	GACGTC	2 cut(s)	81, 488
ZrmI	AGTACT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.