Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017904.1

Orthogroup ID

OG0004921

Physical Location & Seq

Genomic Coordinates Forward (+)

6157 .. 7149

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017904.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgagtgataaggagctaatatggcgagcctctatggtgccacaggtcaccgaatacccttataatcgaacgccaaaggtcgcattcatgttccttgcgaagggaaaactgccattggcgcctctttgggaaaggtttttcatgggacatgaaggtttcttctcagttaatctccatgcagcaccggactttaagaacgagccccccgaatcctcagtgttttacaatcggaggataccaagtaaggcagttgaatggggaaaggccacaatggttgaagcagagaggcgcctattagccaatgccttacttgacttctcaaatgagagatttgtactgctctctgaatcatgcgtacctctcttcaacttcaccacaatctatgactacctcatcaactccaactacagtttcattagctcattcgatgacccgagaggcaccggccgggggcgctacaacaggagaatgtggccaaccgtgacgttgtccgattggcgcaagggttcacaatggttcgaagttcacagaaaccttgccctgaagatagtatcagatgtaacctactaccctatatttaaggacctctgccagcctccttgttacaacgacgaacactatttggcaactctggtgagcaaagttggccccggcatgaactcaaataggagcattacctgggttgattggtccgtaggtgggccgcaccctgcaacatatgggaggcaacatgtgacagaagcgtttctgaatcagttgagacatgggtttgattgtacctacaatggtggcattagtaacatttgccacctctttgctaggaaattccatcctagtacacttgagcctctgctaaaaatagctccgactctgtttggatttaacaccgataatattaccactacaaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

303

Amino Acids

34.89

Weight (kDa)

8.87

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10880
fragaria_vesca	FvH4_4g26974 FvH4_5g11820
malus_domestica	MD14G1228300.v1.1 MD16G1039600.v1.1
prunus_persica	Prupe.1G314500_v2.0.a1 Prupe.5G223400_v2.0.a1
pyrus_communis	pycom14g18970
rosa_chinensis	RchiOBHm_Chr4g0434761 RchiOBHm_Chr7g0185781
rosa_laevigata	RLG00000004884 RLG00000006651
rosa_multiflora	Rmu_sc0002121.1_g000004 Rmu_sc0011187.1_g000001 Rmu_sc0017904.1_g000003 Rmu_sc0017905.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268630 Rroxscaffold_5G00375970
rosa_rugosa	Rorug04G0278200 Rorug06G0471200.1
rosa_samantha	Rh4AG334600 Rh4BG343200 Rh4CG357600 Rh4DG336900 Rh7AG071100 Rh7BG076700 Rh7CG076700 Rh7DG076600
rosa_wichuraiana	Rw4G029180 Rw7G006390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AccB1I	GGYRCC	4 cut(s)	37, 118, 288, 440
AciI	CCGC	1 cut(s)	704
AcoI	YGGCCR	2 cut(s)	445, 473
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	1 cut(s)	563
AcyI	GRCGYC	2 cut(s)	119, 289
AfaI	GTAC	4 cut(s)	336, 357, 778, 838
AfiI	CCNNNNNNNGG	3 cut(s)	100, 450, 699
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	3 cut(s)	254, 278, 367
AjnI	CCWGG	1 cut(s)	677
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	3 cut(s)	16, 420, 863
AluI	AGCT	3 cut(s)	16, 420, 863
Alw26I	GTCTC	1 cut(s)	754
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	5 cut(s)	264, 445, 473, 646, 701
ApeKI	GCWGC	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	824
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	4 cut(s)	121, 291, 456, 501
AspS9I	GGNCC	4 cut(s)	583, 647, 690, 701
AsuC2I	CCSGG	2 cut(s)	449, 651
AsuHPI	GGTGA	3 cut(s)	40, 364, 646
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	583, 690
BalI	TGGCCA	1 cut(s)	475
BanI	GGYRCC	4 cut(s)	37, 118, 288, 440
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	191
BccI	CCATC	1 cut(s)	837
BciT130I	CCWGG	1 cut(s)	679
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	449, 651
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	2 cut(s)	819, 834
BfmI	CTRYAG	1 cut(s)	406
BfoI	RGCGCY	3 cut(s)	122, 292, 457
BfuI	GTATCC	1 cut(s)	228
BisI	GCNGC	2 cut(s)	180, 704
BlsI	GCNGC	2 cut(s)	181, 705
Bme1390I	CCNGG	3 cut(s)	449, 651, 679
Bme18I	GGWCC	2 cut(s)	583, 690
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	4 cut(s)	583, 647, 690, 701
BmiI	GGNNCC	5 cut(s)	39, 120, 290, 442, 649
BmrFI	CCNGG	3 cut(s)	449, 651, 679
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	2 cut(s)	449, 651
BsaHI	GRCGYC	2 cut(s)	119, 289
BsaJI	CCNNGG	3 cut(s)	448, 649, 678
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 450, 699
Bse118I	RCCGGY	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	3 cut(s)	448, 649, 678
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	3 cut(s)	100, 450, 699
BseMII	CTCAG	2 cut(s)	177, 228
BseX3I	CGGCCG	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	191
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	5 cut(s)	266, 447, 475, 648, 703
BshNI	GGYRCC	4 cut(s)	37, 118, 288, 440
BsiEI	CGRYCG	1 cut(s)	448
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	185, 444, 448, 651
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	3 cut(s)	100, 450, 699
BsmAI	GTCTC	1 cut(s)	754
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	5 cut(s)	266, 447, 475, 648, 703
BsoBI	CYCGRG	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	5 cut(s)	266, 447, 475, 648, 703
BspCNI	CTCAG	2 cut(s)	176, 227
BspLI	GGNNCC	5 cut(s)	39, 120, 290, 442, 649
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	4 cut(s)	37, 118, 288, 440
BsrFI	RCCGGY	1 cut(s)	443
BssAI	RCCGGY	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	448, 649, 678
BssNI	GRCGYC	2 cut(s)	119, 289
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	2 cut(s)	410, 481
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	2 cut(s)	119, 289
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	27, 593
BstDEI	CTNAG	2 cut(s)	163, 214
BstEII	GGTNACC	1 cut(s)	46
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	3 cut(s)	122, 292, 457
BstHHI	GCGC	4 cut(s)	121, 291, 456, 501
BstMAI	GTCTC	1 cut(s)	754
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 118, 453, 645
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	3 cut(s)	447, 649, 677
BstSFI	CTRYAG	1 cut(s)	406
BstV1I	GCAGC	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	266, 447, 475, 648, 703
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	27, 593
CfoI	GCGC	4 cut(s)	121, 291, 456, 501
Cfr10I	RCCGGY	1 cut(s)	443
Cfr13I	GGNCC	4 cut(s)	583, 647, 690, 701
Csp6I	GTAC	4 cut(s)	335, 356, 777, 837
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviAII	CATG	8 cut(s)	88, 142, 149, 176, 351, 655, 731, 764
CviQI	GTAC	4 cut(s)	335, 356, 777, 837
DdeI	CTNAG	2 cut(s)	163, 214
DinI	GGCGCC	2 cut(s)	120, 290
EaeI	YGGCCR	2 cut(s)	445, 473
EagI	CGGCCG	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EclXI	CGGCCG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	583, 690
Eco52I	CGGCCG	1 cut(s)	445
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	1 cut(s)	433
Eco91I	GGTNACC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	2 cut(s)	120, 290
EheI	GGCGCC	2 cut(s)	120, 290
FaeI	CATG	8 cut(s)	91, 145, 152, 179, 354, 658, 734, 767
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	8 cut(s)	87, 141, 148, 175, 350, 654, 730, 763
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	2 cut(s)	180, 704
FokI	GGATG	1 cut(s)	816
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	2 cut(s)	180, 704
FspBI	CTAG	2 cut(s)	819, 834
GlaI	GCGC	4 cut(s)	120, 290, 455, 500
GluI	GCNGC	2 cut(s)	180, 704
HaeII	RGCGCY	3 cut(s)	122, 292, 457
HaeIII	GGCC	5 cut(s)	266, 447, 475, 648, 703
HapII	CCGG	4 cut(s)	185, 444, 448, 651
HhaI	GCGC	4 cut(s)	121, 291, 456, 501
Hin1I	GRCGYC	2 cut(s)	119, 289
Hin1II	CATG	8 cut(s)	91, 145, 152, 179, 354, 658, 734, 767
Hin6I	GCGC	4 cut(s)	119, 289, 454, 499
HinP1I	GCGC	4 cut(s)	119, 289, 454, 499
HinfI	GANTC	4 cut(s)	209, 347, 751, 868
HpaII	CCGG	4 cut(s)	185, 444, 448, 651
HphI	GGTGA	3 cut(s)	40, 364, 646
Hpy166II	GTNNAC	3 cut(s)	509, 526, 839
Hpy188I	TCNGA	6 cut(s)	231, 346, 493, 556, 750, 867
Hpy8I	GTNNAC	3 cut(s)	509, 526, 839
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	2 cut(s)	94, 146
HpyCH4III	ACNGT	2 cut(s)	410, 481
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	2 cut(s)	179, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 118, 453, 645
HpyF3I	CTNAG	2 cut(s)	163, 214
HpySE526I	ACGT	1 cut(s)	485
Hsp92I	GRCGYC	2 cut(s)	119, 289
Hsp92II	CATG	8 cut(s)	91, 145, 152, 179, 354, 658, 734, 767
HspAI	GCGC	4 cut(s)	119, 289, 454, 499
KasI	GGCGCC	2 cut(s)	118, 288
LmnI	GCTCC	3 cut(s)	13, 669, 868
Lsp1109I	GCAGC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	819, 834
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	6 cut(s)	46, 481, 559, 602, 733, 797
MboII	GAAGA	3 cut(s)	151, 355, 556
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	475
MluCI	AATT	1 cut(s)	824
MluNI	TGGCCA	1 cut(s)	475
Mly113I	GGCGCC	2 cut(s)	119, 289
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	2 cut(s)	426, 890
Mox20I	TGGCCA	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	475
MseI	TTAA	4 cut(s)	168, 192, 579, 882
Msp20I	TGGCCA	1 cut(s)	475
MspI	CCGG	4 cut(s)	185, 444, 448, 651
MspR9I	CCNGG	3 cut(s)	449, 651, 679
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	679
MwoI	GCNNNNNNNGC	4 cut(s)	22, 118, 453, 645
NarI	GGCGCC	2 cut(s)	119, 289
NciI	CCSGG	2 cut(s)	449, 651
NdeI	CATATG	1 cut(s)	718
NlaIII	CATG	8 cut(s)	91, 145, 152, 179, 354, 658, 734, 767
NlaIV	GGNNCC	5 cut(s)	39, 120, 290, 442, 649
NmuCI	GTSAC	3 cut(s)	46, 481, 733
NspI	RCATGY	1 cut(s)	734
NspV	TTCGAA	1 cut(s)	519
PciI	ACATGT	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	3 cut(s)	209, 347, 751
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	181, 705
PleI	GAGTC	1 cut(s)	862
PluTI	GGCGCC	2 cut(s)	122, 292
PpsI	GAGTC	1 cut(s)	862
PpuMI	RGGWCCY	1 cut(s)	583
PscI	ACATGT	1 cut(s)	730
PsiI	TTATAA	1 cut(s)	63
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	677
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	5 cut(s)	39, 120, 290, 442, 649
PspPI	GGNCC	4 cut(s)	583, 647, 690, 701
PspPPI	RGGWCCY	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	487
RsaI	GTAC	4 cut(s)	336, 357, 778, 838
RsaNI	GTAC	4 cut(s)	335, 356, 777, 837
SaqAI	TTAA	4 cut(s)	168, 192, 579, 882
SatI	GCNGC	2 cut(s)	180, 704
Sau96I	GGNCC	4 cut(s)	583, 647, 690, 701
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	3 cut(s)	449, 651, 679
SduI	GDGCHC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	406
SfoI	GGCGCC	2 cut(s)	120, 290
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	2 cut(s)	583, 690
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	1 cut(s)	824
SsiI	CCGC	1 cut(s)	704
SspDI	GGCGCC	2 cut(s)	118, 288
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	2 cut(s)	819, 834
StyD4I	CCNGG	3 cut(s)	447, 649, 677
TaaI	ACNGT	2 cut(s)	410, 481
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	67, 426, 519
TasI	AATT	1 cut(s)	824
TatI	WGTACW	2 cut(s)	334, 836
TauI	GCSGC	1 cut(s)	706
TfiI	GAWTC	3 cut(s)	209, 347, 751
Tru1I	TTAA	4 cut(s)	168, 192, 579, 882
Tru9I	TTAA	4 cut(s)	168, 192, 579, 882
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	3 cut(s)	46, 481, 733
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	3 cut(s)	46, 481, 733
TspDTI	ATGAA	5 cut(s)	76, 130, 165, 403, 671
TspGWI	ACGGA	1 cut(s)	682
TspRI	CASTG	1 cut(s)	222
Tth111I	GACNNNGTC	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	583, 690
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	824
XceI	RCATGY	1 cut(s)	734
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	2 cut(s)	819, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.