Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017905.1

Orthogroup ID

OG0004921

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 852

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017905.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 770 bp

atgttcattatcgatcacactacgaaagtcttaagttcagaggtctacttcatcccccagctgaagacattttccccactcacagctaattgcactagccacgcacaatgtcaatgcaacttttctgcgtctccgcagttactccctattagttctcctccaaatataagagattacatagctcccaaagagctatggcactccatgagtgataaggagctaatatggcgagcctctatggtgccacaggtcaccgaatacccttataatcgaacgctaaaggtcgcattcatgttccttgcaaagggaaaactgccattggcgcctctttgggaaaggtttttcatgggacatgaaggtttcttctcagtttatctccatgcagcaccggactttaagaacgagccccccctatccacagtgttttacaatcggaggataccaagtaaggcagttgaatggggaaaggccacaatggttgaagcagagaggcgcctattagccaatgccttacttgacttctcaaatgagagatttgtactgctctctgaatcatgcgtacctctcttcaacttcaccacaatctatgactacctcatcaactccaactacagtttcattagctcattcgatgacccgagaggcaccggccgggggcgctacaacaggcgaatgtggccaaccgtgacattgtccgattggcgcaagggttcacaatggttcgaagttcacagaaaccttgccctgaagatagtatcagatgtaaccta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

256

Amino Acids

29.64

Weight (kDa)

9.0

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10880
fragaria_vesca	FvH4_4g26974 FvH4_5g11820
malus_domestica	MD14G1228300.v1.1 MD16G1039600.v1.1
prunus_persica	Prupe.1G314500_v2.0.a1 Prupe.5G223400_v2.0.a1
pyrus_communis	pycom14g18970
rosa_chinensis	RchiOBHm_Chr4g0434761 RchiOBHm_Chr7g0185781
rosa_laevigata	RLG00000004884 RLG00000006651
rosa_multiflora	Rmu_sc0002121.1_g000004 Rmu_sc0011187.1_g000001 Rmu_sc0017904.1_g000003 Rmu_sc0017905.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268630 Rroxscaffold_5G00375970
rosa_rugosa	Rorug04G0278200 Rorug06G0471200.1
rosa_samantha	Rh4AG334600 Rh4BG343200 Rh4CG357600 Rh4DG336900 Rh7AG071100 Rh7BG076700 Rh7CG076700 Rh7DG076600
rosa_wichuraiana	Rw4G029180 Rw7G006390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	4 cut(s)	241, 322, 492, 644
AccI	GTMKAC	1 cut(s)	45
AciI	CCGC	1 cut(s)	134
AcoI	YGGCCR	2 cut(s)	649, 677
AcuI	CTGAAG	2 cut(s)	83, 767
AcyI	GRCGYC	2 cut(s)	323, 493
AfaI	GTAC	2 cut(s)	540, 561
AfiI	CCNNNNNNNGG	2 cut(s)	304, 654
AflII	CTTAAG	1 cut(s)	31
AgsI	TTSAA	3 cut(s)	458, 482, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	6 cut(s)	61, 86, 182, 193, 220, 624
AluI	AGCT	6 cut(s)	61, 86, 182, 193, 220, 624
Alw26I	GTCTC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	637
AoxI	GGCC	3 cut(s)	468, 649, 677
ApeKI	GCWGC	1 cut(s)	383
AspLEI	GCGC	4 cut(s)	325, 495, 660, 705
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	244, 568
AsuII	TTCGAA	1 cut(s)	723
AvaI	CYCGRG	1 cut(s)	637
BalI	TGGCCA	1 cut(s)	679
BanI	GGYRCC	4 cut(s)	241, 322, 492, 644
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	3 cut(s)	326, 496, 661
BfrI	CTTAAG	1 cut(s)	31
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	1 cut(s)	384
BlsI	GCNGC	1 cut(s)	385
Bme1390I	CCNGG	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	637
BmiI	GGNNCC	4 cut(s)	243, 324, 494, 646
BmrFI	CCNGG	1 cut(s)	653
BpiI	GAAGAC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	723
BpuMI	CCSGG	1 cut(s)	653
Bsa29I	ATCGAT	1 cut(s)	12
BsaHI	GRCGYC	2 cut(s)	323, 493
BsaJI	CCNNGG	1 cut(s)	652
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 654
Bse118I	RCCGGY	1 cut(s)	647
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	304, 654
BseMII	CTCAG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	147
BseX3I	CGGCCG	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	395
BseYI	CCCAGC	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	652
BshFI	GGCC	3 cut(s)	470, 651, 679
BshNI	GGYRCC	4 cut(s)	241, 322, 492, 644
BshVI	ATCGAT	1 cut(s)	12
BsiEI	CGRYCG	1 cut(s)	652
BsiHKCI	CYCGRG	1 cut(s)	637
BsiSI	CCGG	3 cut(s)	389, 648, 652
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	304, 654
BsmAI	GTCTC	1 cut(s)	135
BsmBI	CGTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	363
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	470, 651, 679
BsoBI	CYCGRG	1 cut(s)	637
Bsp119I	TTCGAA	1 cut(s)	723
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	3 cut(s)	470, 651, 679
BspCNI	CTCAG	1 cut(s)	380
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	4 cut(s)	243, 324, 494, 646
BspT104I	TTCGAA	1 cut(s)	723
BspT107I	GGYRCC	4 cut(s)	241, 322, 492, 644
BspTI	CTTAAG	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	647
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	1 cut(s)	13
BssNI	GRCGYC	2 cut(s)	323, 493
Bst4CI	ACNGT	3 cut(s)	421, 614, 685
Bst6I	CTCTTC	1 cut(s)	572
BstACI	GRCGYC	2 cut(s)	323, 493
BstAFI	CTTAAG	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	723
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	51
BstH2I	RGCGCY	3 cut(s)	326, 496, 661
BstHHI	GCGC	4 cut(s)	325, 495, 660, 705
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	13
BstMCI	CGRYCG	1 cut(s)	652
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 322, 657, 676
BstPI	GGTNACC	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	71
BstZI	CGGCCG	1 cut(s)	649
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	470, 651, 679
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	4 cut(s)	325, 495, 660, 705
Cfr10I	RCCGGY	1 cut(s)	647
ClaI	ATCGAT	1 cut(s)	12
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	539, 560
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	6 cut(s)	205, 292, 346, 353, 380, 555
CviQI	GTAC	2 cut(s)	539, 560
DdeI	CTNAG	1 cut(s)	367
DinI	GGCGCC	2 cut(s)	324, 494
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	2 cut(s)	649, 677
EagI	CGGCCG	1 cut(s)	649
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EclXI	CGGCCG	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	408
Eco52I	CGGCCG	1 cut(s)	649
Eco57I	CTGAAG	2 cut(s)	83, 767
Eco88I	CYCGRG	1 cut(s)	637
Eco91I	GGTNACC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	408
EgeI	GGCGCC	2 cut(s)	324, 494
EheI	GGCGCC	2 cut(s)	324, 494
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	6 cut(s)	208, 295, 349, 356, 383, 558
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	6 cut(s)	204, 291, 345, 352, 379, 554
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	384
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	384
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	4 cut(s)	324, 494, 659, 704
GluI	GCNGC	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	61
HaeII	RGCGCY	3 cut(s)	326, 496, 661
HaeIII	GGCC	3 cut(s)	470, 651, 679
HapII	CCGG	3 cut(s)	389, 648, 652
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	4 cut(s)	325, 495, 660, 705
Hin1I	GRCGYC	2 cut(s)	323, 493
Hin1II	CATG	6 cut(s)	208, 295, 349, 356, 383, 558
Hin6I	GCGC	4 cut(s)	323, 493, 658, 703
HinP1I	GCGC	4 cut(s)	323, 493, 658, 703
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	3 cut(s)	389, 648, 652
HphI	GGTGA	2 cut(s)	244, 568
Hpy166II	GTNNAC	3 cut(s)	46, 713, 730
Hpy188I	TCNGA	5 cut(s)	40, 435, 550, 697, 760
Hpy8I	GTNNAC	3 cut(s)	46, 713, 730
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	421, 614, 685
HpyCH4V	TGCA	4 cut(s)	93, 117, 302, 383
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 322, 657, 676
HpyF3I	CTNAG	1 cut(s)	367
Hsp92I	GRCGYC	2 cut(s)	323, 493
Hsp92II	CATG	6 cut(s)	208, 295, 349, 356, 383, 558
HspAI	GCGC	4 cut(s)	323, 493, 658, 703
KasI	GGCGCC	2 cut(s)	322, 492
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	2 cut(s)	187, 217
LpnPI	CCDG	7 cut(s)	71, 233, 402, 652, 661, 665, 758
Lsp1109I	GCAGC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	4 cut(s)	138, 250, 685, 763
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	4 cut(s)	76, 355, 559, 760
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	679
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	679
Mly113I	GGCGCC	2 cut(s)	323, 493
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	9 cut(s)	34, 168, 244, 336, 429, 483, 573, 605, 635
Mox20I	TGGCCA	1 cut(s)	679
MscI	TGGCCA	1 cut(s)	679
MseI	TTAA	2 cut(s)	32, 396
Msp20I	TGGCCA	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	61
MspCI	CTTAAG	1 cut(s)	31
MspI	CCGG	3 cut(s)	389, 648, 652
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	287
MwoI	GCNNNNNNNGC	4 cut(s)	226, 322, 657, 676
NarI	GGCGCC	2 cut(s)	323, 493
NciI	CCSGG	1 cut(s)	653
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	6 cut(s)	208, 295, 349, 356, 383, 558
NlaIV	GGNNCC	4 cut(s)	243, 324, 494, 646
NmuCI	GTSAC	2 cut(s)	250, 685
NspV	TTCGAA	1 cut(s)	723
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	385
PluTI	GGCGCC	2 cut(s)	326, 496
PsiI	TTATAA	1 cut(s)	267
PspEI	GGTNACC	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	243, 324, 494, 646
PsyI	GACNNNGTC	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	2 cut(s)	540, 561
RsaNI	GTAC	2 cut(s)	539, 560
SaqAI	TTAA	2 cut(s)	32, 396
SatI	GCNGC	1 cut(s)	384
Sau3AI	GATC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	610
SfoI	GGCGCC	2 cut(s)	324, 494
SfuI	TTCGAA	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	134
SspDI	GGCGCC	2 cut(s)	322, 492
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	421, 614, 685
TaqI	TCGA	4 cut(s)	12, 271, 630, 723
TasI	AATT	1 cut(s)	88
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	32, 396
Tru9I	TTAA	2 cut(s)	32, 396
TscAI	CASTG	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	250, 685
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	250, 685
TspDTI	ATGAA	5 cut(s)	40, 280, 334, 369, 607
TspRI	CASTG	1 cut(s)	426
Tth111I	GACNNNGTC	1 cut(s)	691
Vha464I	CTTAAG	1 cut(s)	31
XagI	CCTNNNNNAGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.