Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004921

Physical Location & Seq

Genomic Coordinates Forward (+)

30413686 .. 30415168

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G314500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGAAGCAGGGTAAGCTCACTGTTGTTGTTAAAGAGCTTTCCGGTGGCCATTTTCATGTCAAAACCCTCATCATCTTCTCTTTGTCAATGTTATTTTTCATTTTTGTTCTCGGGATGTTCATAAATGATCGAACCAGGAAATTCTTAACCTCAGATGACTTATTCCCTCAGCTGAAGGCATTTCCCTCAGTGTCTCCTTGGCCTCCCTCTACACATTGTCAGTGCAACTTTTCTTTGTCTTCTTATTTACTGCCTCTTAGTTTTTCAAATCCAAGAGGACTACTATTGAAAGATTACACAGCTCCCAAGGAGCTATGGCATTCTATGAGTGAAGAGGAGCTTTTTTGGCAAGAGTCAATGGTGCCACGCATCGTCAAATACCCCTATAATCGAACACCAAAGGTGGCATTTATGTACCTAACAAAGGGACGATTGCCATTCGCACCACTTTGGGAAAGTTTTTTCAAGGGACATGATGGCTTCTACTCTGTTTATCTCCATGCAGCACCAGACTTCAAGAATGAGCCACCAGAATCATCAGTGTTTTACAAGCGTAAGATACCAAGTCAGGCAGTTGAATGGGGAAAGCCAACAATGGTTGATGCAGAGAGGCGCCTATTAGCCAATGCCTTACTCGATTTTTCAAATGAGAGATTTGTATTGCTCTCTGAATCATGCATTCCTCTGTTCAACTTTACCAAAGTCTACAGCCACCTCGTCAACTCCAACCACAGTTTTGTTAGCTCATTTGATGATCCAAGAAACGTTGGTCGTGGACGTTACAAGAAGCAAATGTGGCCAACCGTGACATTATCAGATTGGCGTAAGGGCTCTCAGTGGTTTGAAGCTCACAGAAAGCTTACCATAGAGATAGTTTCCGATCCCACATACTACCCTGTATTTAAGGACTTTTGCCTGCCTCCCTGCTACACAGACGAGCACTACTTGGCAACTCTTGTGACCAAAGTTGGTCCTGGGATCAACTCAAACAGGACCATTACCTGGGTAGATTGGTCAACTGGTGGTCCTCACCCAACAACGTTTGTGAGGAAAGATGTGACGGAAAACTTTCTGATTCGGTTAAGAAATGGATTTAATTGTACTTACAATGGTGGCATGAGCTCCATTTGCCACCTATTTGCTAGAAAGTTTCATCCAAGTACACTGGAGCCTTTACTAAAAATAGCTCCAGCTCTGTTTGGATTTAACACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Branch

Protein Analysis

405

Amino Acids

46.63

Weight (kDa)

9.27

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10880
fragaria_vesca	FvH4_4g26974 FvH4_5g11820
malus_domestica	MD14G1228300.v1.1 MD16G1039600.v1.1
prunus_persica	Prupe.1G314500_v2.0.a1 Prupe.5G223400_v2.0.a1
pyrus_communis	pycom14g18970
rosa_chinensis	RchiOBHm_Chr4g0434761 RchiOBHm_Chr7g0185781
rosa_laevigata	RLG00000004884 RLG00000006651
rosa_multiflora	Rmu_sc0002121.1_g000004 Rmu_sc0011187.1_g000001 Rmu_sc0017904.1_g000003 Rmu_sc0017905.1_g000001
rosa_roxburghii	Rroxscaffold_3G00268630 Rroxscaffold_5G00375970
rosa_rugosa	Rorug04G0278200 Rorug06G0471200.1
rosa_samantha	Rh4AG334600 Rh4BG343200 Rh4CG357600 Rh4DG336900 Rh7AG071100 Rh7BG076700 Rh7CG076700 Rh7DG076600
rosa_wichuraiana	Rw4G029180 Rw7G006390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	361, 612
AccB7I	CCANNNNNTGG	1 cut(s)	1002
AccI	GTMKAC	1 cut(s)	705
AclI	AACGTT	2 cut(s)	765, 1040
AclWI	GGATC	3 cut(s)	749, 875, 986
AcoI	YGGCCR	2 cut(s)	46, 797
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	613
AfaI	GTAC	3 cut(s)	416, 1102, 1162
AfiI	CCNNNNNNNGG	2 cut(s)	424, 1002
AgsI	TTSAA	8 cut(s)	267, 289, 466, 517, 578, 645, 691, 845
AjnI	CCWGG	3 cut(s)	134, 973, 1001
Alw21I	GWGCWC	2 cut(s)	942, 1124
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	3 cut(s)	749, 875, 986
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	3 cut(s)	46, 200, 797
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	1068
AspLEI	GCGC	1 cut(s)	615
AspS9I	GGNCC	3 cut(s)	971, 993, 1025
AsuHPI	GGTGA	1 cut(s)	1022
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	3 cut(s)	971, 993, 1025
BalI	TGGCCA	2 cut(s)	48, 799
BanI	GGYRCC	2 cut(s)	361, 612
BanII	GRGCYC	2 cut(s)	833, 1124
BbsI	GAAGAC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	942, 1124
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	3 cut(s)	136, 975, 1003
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	1 cut(s)	1143
BfmI	CTRYAG	1 cut(s)	706
BfoI	RGCGCY	1 cut(s)	616
BisI	GCNGC	1 cut(s)	504
BlsI	GCNGC	1 cut(s)	505
Bme1390I	CCNGG	3 cut(s)	136, 975, 1003
Bme18I	GGWCC	3 cut(s)	971, 993, 1025
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	971, 993, 1025
BmiI	GGNNCC	3 cut(s)	363, 614, 1170
BmrFI	CCNGG	3 cut(s)	136, 975, 1003
BmsI	GCATC	2 cut(s)	378, 592
BpiI	GAAGAC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	1173, 1187
Bpu10I	CCTNAGC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	613
BsaJI	CCNNGG	4 cut(s)	197, 306, 974, 1002
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 1002
Bse1I	ACTGG	2 cut(s)	1024, 1170
BseBI	CCWGG	3 cut(s)	136, 975, 1003
BseDI	CCNNGG	4 cut(s)	197, 306, 974, 1002
BseGI	GGATG	2 cut(s)	120, 1153
BseLI	CCNNNNNNNGG	2 cut(s)	424, 1002
BseMII	CTCAG	4 cut(s)	165, 182, 201, 848
BseNI	ACTGG	2 cut(s)	1024, 1170
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	515
BshFI	GGCC	3 cut(s)	48, 202, 799
BshNI	GGYRCC	2 cut(s)	361, 612
BsiHKAI	GWGCWC	2 cut(s)	942, 1124
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	441, 483
BslI	CCNNNNNNNGG	2 cut(s)	424, 1002
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	2 cut(s)	441, 483
BsmI	GAATGC	2 cut(s)	319, 678
BsnI	GGCC	3 cut(s)	48, 202, 799
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	3 cut(s)	833, 942, 1124
Bsp143I	GATC	4 cut(s)	127, 754, 880, 978
BspANI	GGCC	3 cut(s)	48, 202, 799
BspCNI	CTCAG	4 cut(s)	164, 181, 200, 847
BspLI	GGNNCC	3 cut(s)	363, 614, 1170
BspPI	GGATC	3 cut(s)	749, 875, 986
BspT107I	GGYRCC	2 cut(s)	361, 612
BsrI	ACTGG	2 cut(s)	1024, 1170
BssECI	CCNNGG	4 cut(s)	197, 306, 974, 1002
BssMI	GATC	4 cut(s)	127, 754, 880, 978
BssNI	GRCGYC	1 cut(s)	613
BssT1I	CCWWGG	2 cut(s)	197, 306
Bst2UI	CCWGG	3 cut(s)	136, 975, 1003
Bst4CI	ACNGT	3 cut(s)	22, 734, 805
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	613
BstC8I	GCNNGC	1 cut(s)	917
BstDEI	CTNAG	5 cut(s)	151, 168, 187, 257, 834
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	120, 1153
BstH2I	RGCGCY	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	615
BstKTI	GATC	4 cut(s)	130, 757, 883, 981
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	4 cut(s)	127, 754, 880, 978
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 346, 796, 1128
BstNI	CCWGG	3 cut(s)	136, 975, 1003
BstSCI	CCNGG	3 cut(s)	134, 973, 1001
BstSFI	CTRYAG	1 cut(s)	706
BstV1I	GCAGC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	48, 202, 799
BtsCI	GGATG	2 cut(s)	120, 1153
BtsIMutI	CAGTG	6 cut(s)	18, 195, 227, 546, 842, 1163
Cac8I	GCNNGC	1 cut(s)	917
CfoI	GCGC	1 cut(s)	615
Cfr13I	GGNCC	3 cut(s)	971, 993, 1025
Csp6I	GTAC	3 cut(s)	415, 1101, 1161
CviAII	CATG	5 cut(s)	56, 473, 500, 675, 1117
CviQI	GTAC	3 cut(s)	415, 1101, 1161
DdeI	CTNAG	5 cut(s)	151, 168, 187, 257, 834
DinI	GGCGCC	1 cut(s)	614
DpnI	GATC	4 cut(s)	129, 756, 882, 980
DpnII	GATC	4 cut(s)	127, 754, 880, 978
EaeI	YGGCCR	2 cut(s)	46, 797
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	1122
Eco130I	CCWWGG	2 cut(s)	197, 306
Eco24I	GRGCYC	2 cut(s)	833, 1124
Eco47I	GGWCC	3 cut(s)	971, 993, 1025
Eco53kI	GAGCTC	1 cut(s)	1122
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	1122
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoRII	CCWGG	3 cut(s)	134, 973, 1001
EcoT14I	CCWWGG	2 cut(s)	197, 306
EcoT22I	ATGCAT	1 cut(s)	680
EcoT38I	GRGCYC	2 cut(s)	833, 1124
EgeI	GGCGCC	1 cut(s)	614
EheI	GGCGCC	1 cut(s)	614
ErhI	CCWWGG	2 cut(s)	197, 306
FaeI	CATG	5 cut(s)	59, 476, 503, 678, 1120
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FaqI	GGGAC	2 cut(s)	441, 483
FatI	CATG	5 cut(s)	55, 472, 499, 674, 1116
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	1 cut(s)	504
FokI	GGATG	2 cut(s)	127, 1140
FriOI	GRGCYC	2 cut(s)	833, 1124
Fsp4HI	GCNGC	1 cut(s)	504
FspBI	CTAG	1 cut(s)	1143
GlaI	GCGC	1 cut(s)	614
GluI	GCNGC	1 cut(s)	504
GsuI	CTGGAG	2 cut(s)	1173, 1187
HaeII	RGCGCY	1 cut(s)	616
HaeIII	GGCC	3 cut(s)	48, 202, 799
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	615
Hin1I	GRCGYC	1 cut(s)	613
Hin1II	CATG	5 cut(s)	59, 476, 503, 678, 1120
Hin6I	GCGC	1 cut(s)	613
HinP1I	GCGC	1 cut(s)	613
HincII	GTYRAC	2 cut(s)	721, 1017
HindII	GTYRAC	2 cut(s)	721, 1017
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	4 cut(s)	353, 533, 671, 1075
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	1022
Hpy166II	GTNNAC	5 cut(s)	706, 721, 776, 1017, 1163
Hpy188I	TCNGA	5 cut(s)	154, 670, 817, 880, 1074
Hpy188III	TCNNGA	2 cut(s)	112, 517
Hpy8I	GTNNAC	5 cut(s)	706, 721, 776, 1017, 1163
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	3 cut(s)	22, 734, 805
HpyCH4IV	ACGT	3 cut(s)	765, 778, 1040
HpyCH4V	TGCA	4 cut(s)	225, 503, 605, 678
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 346, 796, 1128
HpyF3I	CTNAG	5 cut(s)	151, 168, 187, 257, 834
HpySE526I	ACGT	3 cut(s)	765, 778, 1040
Hsp92I	GRCGYC	1 cut(s)	613
Hsp92II	CATG	5 cut(s)	59, 476, 503, 678, 1120
HspAI	GCGC	1 cut(s)	613
KasI	GGCGCC	1 cut(s)	612
Kzo9I	GATC	4 cut(s)	127, 754, 880, 978
LmnI	GCTCC	6 cut(s)	307, 310, 337, 1127, 1168, 1192
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	2 cut(s)	378, 592
MaeI	CTAG	1 cut(s)	1143
MaeII	ACGT	3 cut(s)	765, 778, 1040
MaeIII	GTNAC	4 cut(s)	779, 805, 958, 1057
MalI	GATC	4 cut(s)	129, 756, 882, 980
MboI	GATC	4 cut(s)	127, 754, 880, 978
MboII	GAAGA	3 cut(s)	67, 231, 344
MhlI	GDGCHC	3 cut(s)	833, 942, 1124
MlsI	TGGCCA	2 cut(s)	48, 799
MluCI	AATT	2 cut(s)	140, 1096
MluNI	TGGCCA	2 cut(s)	48, 799
Mly113I	GGCGCC	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	750
Mox20I	TGGCCA	2 cut(s)	48, 799
Mph1103I	ATGCAT	1 cut(s)	680
MroXI	GAANNNNTTC	1 cut(s)	1068
MscI	TGGCCA	2 cut(s)	48, 799
MseI	TTAA	6 cut(s)	30, 146, 903, 1082, 1095, 1206
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	2 cut(s)	48, 799
MspA1I	CMGCKG	1 cut(s)	172
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	3 cut(s)	136, 975, 1003
Mva1269I	GAATGC	2 cut(s)	319, 678
MvaI	CCWGG	3 cut(s)	136, 975, 1003
MwoI	GCNNNNNNNGC	4 cut(s)	13, 346, 796, 1128
NarI	GGCGCC	1 cut(s)	613
NdeII	GATC	4 cut(s)	127, 754, 880, 978
NlaIII	CATG	5 cut(s)	59, 476, 503, 678, 1120
NlaIV	GGNNCC	3 cut(s)	363, 614, 1170
NmuCI	GTSAC	3 cut(s)	805, 958, 1057
NsiI	ATGCAT	1 cut(s)	680
PctI	GAATGC	2 cut(s)	319, 678
PdmI	GAANNNNTTC	1 cut(s)	1068
PfeI	GAWTC	3 cut(s)	533, 671, 1075
PflMI	CCANNNNNTGG	1 cut(s)	1002
PkrI	GCNGC	1 cut(s)	505
PleI	GAGTC	1 cut(s)	361
PluTI	GGCGCC	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	361
Psp124BI	GAGCTC	1 cut(s)	1124
Psp1406I	AACGTT	2 cut(s)	765, 1040
Psp6I	CCWGG	3 cut(s)	134, 973, 1001
PspGI	CCWGG	3 cut(s)	134, 973, 1001
PspN4I	GGNNCC	3 cut(s)	363, 614, 1170
PspPI	GGNCC	3 cut(s)	971, 993, 1025
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	3 cut(s)	416, 1102, 1162
RsaNI	GTAC	3 cut(s)	415, 1101, 1161
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	1124
SaqAI	TTAA	6 cut(s)	30, 146, 903, 1082, 1095, 1206
SatI	GCNGC	1 cut(s)	504
Sau3AI	GATC	4 cut(s)	127, 754, 880, 978
Sau96I	GGNCC	3 cut(s)	971, 993, 1025
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	136, 975, 1003
SduI	GDGCHC	3 cut(s)	833, 942, 1124
SfaNI	GCATC	2 cut(s)	378, 592
SfcI	CTRYAG	1 cut(s)	706
SfoI	GGCGCC	1 cut(s)	614
SinI	GGWCC	3 cut(s)	971, 993, 1025
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	140, 1096
SspDI	GGCGCC	1 cut(s)	612
SspMI	CTAG	1 cut(s)	1143
SstI	GAGCTC	1 cut(s)	1124
StyD4I	CCNGG	3 cut(s)	134, 973, 1001
StyI	CCWWGG	2 cut(s)	197, 306
TaaI	ACNGT	3 cut(s)	22, 734, 805
TaiI	ACGT	3 cut(s)	768, 781, 1043
TaqI	TCGA	3 cut(s)	130, 391, 636
TasI	AATT	2 cut(s)	140, 1096
TatI	WGTACW	2 cut(s)	1100, 1160
TfiI	GAWTC	3 cut(s)	533, 671, 1075
Tru1I	TTAA	6 cut(s)	30, 146, 903, 1082, 1095, 1206
Tru9I	TTAA	6 cut(s)	30, 146, 903, 1082, 1095, 1206
TscAI	CASTG	6 cut(s)	25, 195, 227, 546, 842, 1170
TseFI	GTSAC	3 cut(s)	805, 958, 1057
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	3 cut(s)	805, 958, 1057
TspDTI	ATGAA	5 cut(s)	17, 44, 88, 109, 1142
TspGWI	ACGGA	1 cut(s)	1076
TspRI	CASTG	6 cut(s)	25, 195, 227, 546, 842, 1170
Van91I	CCANNNNNTGG	1 cut(s)	1002
VpaK11BI	GGWCC	3 cut(s)	971, 993, 1025
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	705
XmnI	GAANNNNTTC	1 cut(s)	1068
XspI	CTAG	1 cut(s)	1143
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.