Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Reverse (-)

3912754 .. 3914465

Gene Structure 1712 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCGTTCCTCTTCCGCATTCGAACATCGGAATTTATACTCCAGAAAGCGACTCAATTCCGATTGAAGTCTTCTTCTTCATCTATCTTCACACTAAAATCTCTCACTAGCAAGCAGAAGAAGAGCCGAGATACTCTCTCCCTTCTCAAATCCGAGAATAATCCTGATCGAATCCTCGAAATCTGCCGATCCACTTCACTCTCACCTGATTATCACGTCGACCGTATCATCTTCTCCGTTGCGGTGGTGACACTAGCGAGAGAGAAACACTTCGTCGCTGTATCGCAGCTTCTCGACGGTTTCATCCAAAACCAACCCGATCCAAAATCCGAGAGTTTCGCAGTCCGTGCCATTATCCTATACGGCAGAGCGAATATGCTTGATCGATCTATACAAACATTTCGCAACCTCGAGCAATACGAGATCCCAAGGACGGTGAAGTCTCTAAATGCTCTTCTTTTCGCTTGTTTAATGGCTAAGGATTACAAAGAAGCGAATCGTGTCTACCTCGAAATGCCGAAGATGTATGGCATTGAACCTGATCTCGAAACTTACAATAGAATGATTAGAGTCTTGTGTGAATCAGGTTCAACGAGTTCATCATACTCCATTGTTGCAGAGATGGAGAGGAAATGGATAAAGCCAACAGCTGCTAGCTTTGGTTTAATGATTGATGGTTTTTACAAGGAGGAGAAGTTTGATGAAGTGAGGAAAGTGATGAGAATGATGGATGAATTTGGTGTTCATGTTGGTGTAGCTACATACAACATTATGATTCAATGTTTGTGTAAAAGGAAGAAATCTGCAGAAGCAAAGGCGTTGATTGATGGGGTTATGTCTTGTAGGATGAGACCAAACTCTGTGACGTATTCGCTTTTGATTCATGGGTTTTGCAGTGAGGAGAATTTGGATGAAGCTATGAATTTGTTTGAGGTTATGGTGTGTAATGGATACAAGCCTGATAGTGAATGTTACTTCACTTTGATACATTGTTTGTGTAAAGGAGGGGACTTTGAGACAGCTTTGATCCTTTGTAGAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTGTCATGAAGTGGCTTGTTAATGGACTAGCAAGTCGTTCAAAGGTCGATGAAGCAAAGGAGCTCATTGCGGTAGTTAAAGAGAAGTTTACCAGAAATGTGGACTTGTGGAATGAAGTCGAAGCTGCATTGCCTTTGCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

405

Amino Acids

46.39

Weight (kDa)

8.48

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	146 - 193	5.3e-08	PPR repeat family
PPR_2	PF13041	180 - 229	1.8e-07	PPR repeat family
PPR_2	PF13041	215 - 264	9.4e-09	PPR repeat family
PPR_2	PF13041	251 - 298	2e-11	PPR repeat family
PPR_1	PF12854	284 - 314	2.8e-11	PPR repeat
PPR_2	PF13041	285 - 334	6.4e-14	PPR repeat family
PPR	PF01535	288 - 317	9.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	439, 1104
AccI	GTMKAC	2 cut(s)	219, 504
AciI	CCGC	3 cut(s)	16, 242, 1142
AclWI	GGATC	4 cut(s)	183, 314, 418, 1021
AcsI	RAATTY	4 cut(s)	32, 734, 904, 922
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	67, 536, 591, 779, 1113
AjiI	CACGTC	1 cut(s)	217
AluBI	AGCT	8 cut(s)	289, 650, 657, 758, 917, 1022, 1135, 1196
AluI	AGCT	8 cut(s)	289, 650, 657, 758, 917, 1022, 1135, 1196
Alw21I	GWGCWC	1 cut(s)	1137
Alw26I	GTCTC	3 cut(s)	447, 844, 1010
AlwI	GGATC	4 cut(s)	183, 314, 418, 1021
Ama87I	CYCGRG	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	286, 650, 1196
ApoI	RAATTY	4 cut(s)	32, 734, 904, 922
Asp700I	GAANNNNTTC	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	195, 259, 448
AsuII	TTCGAA	1 cut(s)	22
AsuNHI	GCTAGC	1 cut(s)	653
AvaI	CYCGRG	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	1137
BarI	GAAGNNNNNNTAC	2 cut(s)	273, 305
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	1137
BbvI	GCAGC	3 cut(s)	298, 637, 1183
BccI	CCATC	4 cut(s)	616, 668, 721, 821
BceAI	ACGGC	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	944
BcoDI	GTCTC	3 cut(s)	447, 844, 1010
BfaI	CTAG	4 cut(s)	108, 254, 654, 1100
BfmI	CTRYAG	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	944
BisI	GCNGC	3 cut(s)	287, 651, 1197
BlsI	GCNGC	3 cut(s)	288, 652, 1198
BmeT110I	CYCGRG	1 cut(s)	410
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	1062
BmtI	GCTAGC	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	22
Bsa29I	ATCGAT	1 cut(s)	385
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	680, 710
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse3DI	GCAATG	2 cut(s)	1137, 1199
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	4 cut(s)	303, 736, 852, 916
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	2 cut(s)	1137, 1199
BseRI	GAGGAG	2 cut(s)	704, 914
BseXI	GCAGC	3 cut(s)	298, 637, 1183
Bsh1285I	CGRYCG	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	1137
BsiHKCI	CYCGRG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	3 cut(s)	447, 844, 1010
BsmFI	GGGAC	1 cut(s)	1022
BsmI	GAATGC	1 cut(s)	18
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	1137
Bsp143I	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
BspACI	CCGC	3 cut(s)	16, 242, 1142
BspDI	ATCGAT	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	1077
BspLI	GGNNCC	1 cut(s)	1062
BspMAI	CTGCAG	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	657
BspPI	GGATC	4 cut(s)	183, 314, 418, 1021
BspQI	GCTCTTC	2 cut(s)	116, 459
BspT104I	TTCGAA	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	844
BsrDI	GCAATG	2 cut(s)	1137, 1199
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	224, 299, 436
Bst6I	CTCTTC	3 cut(s)	17, 116, 459
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	113, 655
BstDEI	CTNAG	2 cut(s)	477, 1212
BstF5I	GGATG	4 cut(s)	303, 736, 852, 916
BstKTI	GATC	8 cut(s)	169, 191, 322, 385, 389, 426, 544, 1029
BstMAI	GTCTC	3 cut(s)	447, 844, 1010
BstMBI	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	3 cut(s)	298, 637, 1183
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	423
BstXI	CCANNNNNNTGG	1 cut(s)	1171
BstYI	RGATCY	1 cut(s)	423
Bsu15I	ATCGAT	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	944
BsuTUI	ATCGAT	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	303, 736, 852, 916
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	1 cut(s)	901
Cac8I	GCNNGC	2 cut(s)	113, 655
CciI	TCATGA	1 cut(s)	1077
ClaI	ATCGAT	1 cut(s)	385
CviAII	CATG	3 cut(s)	746, 884, 1078
DdeI	CTNAG	2 cut(s)	477, 1212
DpnI	GATC	8 cut(s)	168, 190, 321, 384, 388, 425, 543, 1028
DpnII	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
DrdI	GACNNNNNNGTC	2 cut(s)	439, 1104
DseDI	GACNNNNNNGTC	2 cut(s)	439, 1104
Eam1104I	CTCTTC	3 cut(s)	17, 116, 459
EarI	CTCTTC	3 cut(s)	17, 116, 459
Ecl136II	GAGCTC	1 cut(s)	1135
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	1137
Eco31I	GGTCTC	1 cut(s)	844
Eco53kI	GAGCTC	1 cut(s)	1135
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	1137
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	3 cut(s)	749, 887, 1081
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	3 cut(s)	745, 883, 1077
FblI	GTMKAC	2 cut(s)	219, 504
Fnu4HI	GCNGC	3 cut(s)	287, 651, 1197
FokI	GGATG	4 cut(s)	290, 743, 859, 923
FriOI	GRGCYC	1 cut(s)	1137
Fsp4HI	GCNGC	3 cut(s)	287, 651, 1197
FspBI	CTAG	4 cut(s)	108, 254, 654, 1100
GluI	GCNGC	3 cut(s)	287, 651, 1197
GsuI	CTGGAG	1 cut(s)	26
Hin1II	CATG	3 cut(s)	749, 887, 1081
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	7 cut(s)	52, 171, 496, 570, 581, 775, 880
HphI	GGTGA	3 cut(s)	195, 259, 448
Hpy166II	GTNNAC	4 cut(s)	220, 505, 1161, 1174
Hpy188I	TCNGA	5 cut(s)	31, 62, 154, 331, 1065
Hpy188III	TCNNGA	5 cut(s)	43, 164, 293, 545, 1078
Hpy8I	GTNNAC	4 cut(s)	220, 505, 1161, 1174
Hpy99I	CGWCG	3 cut(s)	221, 278, 299
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	3 cut(s)	224, 299, 436
HpyCH4IV	ACGT	2 cut(s)	216, 866
HpyCH4V	TGCA	4 cut(s)	617, 806, 894, 1199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	477, 1212
HpySE526I	ACGT	2 cut(s)	216, 866
Hsp92II	CATG	3 cut(s)	749, 887, 1081
Kzo9I	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
LguI	GCTCTTC	2 cut(s)	116, 459
LmnI	GCTCC	1 cut(s)	1132
LpnPI	CCDG	7 cut(s)	56, 177, 219, 552, 570, 972, 1177
Lsp1109I	GCAGC	3 cut(s)	298, 637, 1183
MaeI	CTAG	4 cut(s)	108, 254, 654, 1100
MaeII	ACGT	2 cut(s)	216, 866
MaeIII	GTNAC	3 cut(s)	247, 862, 971
MalI	GATC	8 cut(s)	168, 190, 321, 384, 388, 425, 543, 1028
MboI	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
MflI	RGATCY	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	1137
MluCI	AATT	6 cut(s)	32, 56, 734, 904, 922, 1054
MlyI	GAGTC	2 cut(s)	46, 579
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	4 cut(s)	470, 665, 1092, 1149
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	3 cut(s)	749, 887, 1081
NlaIV	GGNNCC	1 cut(s)	1062
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	247, 862
NspV	TTCGAA	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	410
PagI	TCATGA	1 cut(s)	1077
PciSI	GCTCTTC	2 cut(s)	116, 459
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	5 cut(s)	171, 496, 581, 775, 880
PkrI	GCNGC	3 cut(s)	288, 652, 1198
PleI	GAGTC	2 cut(s)	46, 578
PpsI	GAGTC	2 cut(s)	46, 578
Psp124BI	GAGCTC	1 cut(s)	1137
PspN4I	GGNNCC	1 cut(s)	1062
PspXI	VCTCGAGB	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	750
SacI	GAGCTC	1 cut(s)	1137
SalI	GTCGAC	1 cut(s)	218
SapI	GCTCTTC	2 cut(s)	116, 459
SaqAI	TTAA	4 cut(s)	470, 665, 1092, 1149
SatI	GCNGC	3 cut(s)	287, 651, 1197
Sau3AI	GATC	8 cut(s)	166, 188, 319, 382, 386, 423, 541, 1026
SchI	GAGTC	2 cut(s)	46, 579
SduI	GDGCHC	1 cut(s)	1137
SfcI	CTRYAG	1 cut(s)	804
Sfr274I	CTCGAG	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	410
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	6 cut(s)	32, 56, 734, 904, 922, 1054
SsiI	CCGC	3 cut(s)	16, 242, 1142
SspMI	CTAG	4 cut(s)	108, 254, 654, 1100
SstI	GAGCTC	1 cut(s)	1137
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	224, 299, 436
TaiI	ACGT	2 cut(s)	219, 869
TasI	AATT	6 cut(s)	32, 56, 734, 904, 922, 1054
TfiI	GAWTC	5 cut(s)	171, 496, 581, 775, 880
Tru1I	TTAA	4 cut(s)	470, 665, 1092, 1149
Tru9I	TTAA	4 cut(s)	470, 665, 1092, 1149
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	2 cut(s)	247, 862
TseI	GCWGC	3 cut(s)	286, 650, 1196
Tsp45I	GTSAC	2 cut(s)	247, 862
TspGWI	ACGGA	2 cut(s)	226, 335
TspRI	CASTG	1 cut(s)	901
XapI	RAATTY	4 cut(s)	32, 734, 904, 922
XhoI	CTCGAG	1 cut(s)	410
XmiI	GTMKAC	2 cut(s)	219, 504
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	4 cut(s)	108, 254, 654, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.