pycom10g26970

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
28100173 .. 28101351
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g26970.1

Sequence Viewer

Length: 1179 bp
ATGTCTCTTCTATCTCGCCTTCGCCACGCCGCCCTCACCAGCCATGCCCGCCACCTCTCCACGGCGGCCCCACTCTCCTCAAAGGACAAAACTAGGACCGCCATCGCCCTCCTCAAATCCGAGAAAGACCCCTCCAAAATCCTTGAAATCTGCAAATCCGCCTCCCTAACTCCCGAATCCCACCTCGATCGCATTGCTTTCTCCGTCGCCATCAACCGCCTCCGTGACGACAACCACTACGACTTCATCCGCCAGTTCCTCGACGACCTCTTCGCCTCCCGCCCCGATCTCAAAACGCAGCGATTCGCCTCCCACGCCATCATCCTCTACGGCCAGGCCGGCATGCCCGACCACGCCGTCCGCACCTTCGAGCGCTGCCATGAATTGGGGATTCCTCGGAACGTCAAGACGCTCAACGCGTTGCTGCTGGCCTGTATATTCTCCAGGAATTACAAGGAAGTGAACCGGGTTTTTCTCGAGTTCCCGAAGATTTACGGGATCGATCCCTATTTGGAGACTTACAATTACGTGATCAAGGCGTTTTCGGAGGCGGGCACCACCAGCTCCGCCTACTCGGTGCTGGCGGAGATGGAGAGGAAGAATGTGAAGCCGGATGCCAACACTTTCGGCCATTTGCTCACCGGGTTTTACACCGCATTGAAGTTTGAAGACGTTGGGAAGGTGACGAATTTGATGGAGAAGCACGGGTTTCAGCCAGGGCTTTCTACTTACAACATTAGGATCAAGAGTTTGTGTAAATTGAGGAGGTCTTCCGAGGCGAAAGCGTTGCTGGACGGGATGCTTTCGAGGGGGATGAAGCCGAATGCAGTCACGTTTTGCCATTTGATTCATGGGTTTTGCAAGGAAGGGAAATTGGACGAGGCGAAGAACTTGTTTAAGAACATGGTGAACCGCGGATTTAAGCCGGATGCTAACTGCTACTTCACTCTTGTGTATTTCCTGTCCAAAGGTGGGGAGTTTGAGAGTGCGTTGCAGTTTGCTAAGGAGAGCATTGAGAAGAATTGGGTTCCGAATTTCGGAACAATGAAGCTGCTTGTGGACGGGCTGGTGAAGGCTTCCAAGGTGGCGGAGGCAAGGGAGGTCATCGGACAGATGAAGGAGAAGTTTTCGGCGAATCAAGATCAGTGGAATGAAGTTGAAGCTGGATTGCCGCAGTGA

Protein Analysis

393

Amino Acids

44.22

Weight (kDa)

9.23

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 123 - 181 4.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 173 - 216 3.1e-09 PPR repeat family
PPR_3 PF13812 192 - 249 4.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 208 - 253 7.8e-06 PPR repeat family
PPR_2 PF13041 239 - 288 1.2e-11 PPR repeat family
PPR_3 PF13812 263 - 312 2.3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 270 - 303 3.4e-13 PPR repeat
PPR_2 PF13041 277 - 318 6e-11 PPR repeat family
PPR PF01535 277 - 307 4.7e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 385
AccII CGCG 2 cut(s) 419, 915
AclWI GGATC 3 cut(s) 497, 506, 749
AcoI YGGCCR 2 cut(s) 331, 628
AcsI RAATTY 2 cut(s) 688, 1033
AfeI AGCGCT 1 cut(s) 374
AfiI CCNNNNNNNGG 4 cut(s) 61, 385, 972, 1037
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 4 cut(s) 146, 661, 668, 1160
AjnI CCWGG 3 cut(s) 333, 443, 715
AleI CACNNNNGTG 1 cut(s) 950
AluBI AGCT 3 cut(s) 564, 1051, 1163
AluI AGCT 3 cut(s) 564, 1051, 1163
Alw26I GTCTC 2 cut(s) 9, 509
AlwI GGATC 3 cut(s) 497, 506, 749
Ama87I CYCGRG 1 cut(s) 476
Aor51HI AGCGCT 1 cut(s) 374
AoxI GGCC 5 cut(s) 66, 331, 336, 429, 628
ApeKI GCWGC 4 cut(s) 298, 375, 424, 1051
ApoI RAATTY 2 cut(s) 688, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 1 cut(s) 375
AspS9I GGNCC 2 cut(s) 67, 96
AsuC2I CCSGG 2 cut(s) 467, 643
AsuHPI GGTGA 5 cut(s) 28, 631, 694, 919, 1081
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 1 cut(s) 96
BaeGI GKGCMC 1 cut(s) 557
BanI GGYRCC 1 cut(s) 554
BbsI GAAGAC 2 cut(s) 675, 762
BbvI GCAGC 4 cut(s) 310, 362, 411, 1038
BccI CCATC 5 cut(s) 110, 218, 326, 583, 688
BceAI ACGGC 3 cut(s) 78, 341, 346
BcgI CGANNNNNNTGC 4 cut(s) 176, 210, 769, 803
BciT130I CCWGG 3 cut(s) 335, 445, 717
BclI TGATCA 1 cut(s) 531
BcnI CCSGG 2 cut(s) 467, 643
BcoDI GTCTC 2 cut(s) 9, 509
BfaI CTAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 376
BglI GCCNNNNNGGC 1 cut(s) 339
BisI GCNGC 7 cut(s) 30, 66, 299, 376, 425, 1052, 1172
BlsI GCNGC 7 cut(s) 31, 67, 300, 377, 426, 1053, 1173
Bme1390I CCNGG 5 cut(s) 335, 445, 467, 643, 717
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 67, 96
BmiI GGNNCC 3 cut(s) 69, 556, 1029
BmrFI CCNGG 5 cut(s) 335, 445, 467, 643, 717
BmsI GCATC 3 cut(s) 604, 789, 919
BpiI GAAGAC 2 cut(s) 675, 762
BpmI CTGGAG 1 cut(s) 427
Bpu10I CCTNAGC 1 cut(s) 1002
BpuMI CCSGG 2 cut(s) 467, 643
Bsa29I ATCGAT 1 cut(s) 501
BsaAI YACGTR 1 cut(s) 529
BsaJI CCNNGG 6 cut(s) 60, 395, 716, 774, 913, 1080
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 385, 972, 1037
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 3 cut(s) 335, 445, 717
BseCI ATCGAT 1 cut(s) 501
BseDI CCNNGG 6 cut(s) 60, 395, 716, 774, 913, 1080
BseGI GGATG 6 cut(s) 246, 321, 619, 804, 819, 934
BseLI CCNNNNNNNGG 4 cut(s) 61, 385, 972, 1037
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 3 cut(s) 67, 101, 778
BseSI GKGCMC 1 cut(s) 557
BseXI GCAGC 4 cut(s) 310, 362, 411, 1038
Bsh1236I CGCG 2 cut(s) 419, 915
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 5 cut(s) 68, 333, 338, 431, 630
BshNI GGYRCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 501
BsiEI CGRYCG 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 5 cut(s) 339, 466, 611, 642, 926
BslI CCNNNNNNNGG 4 cut(s) 61, 385, 972, 1037
BsmAI GTCTC 2 cut(s) 9, 509
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 5 cut(s) 68, 333, 338, 431, 630
BsoBI CYCGRG 1 cut(s) 476
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
BspANI GGCC 5 cut(s) 68, 333, 338, 431, 630
BspDI ATCGAT 1 cut(s) 501
BspFNI CGCG 2 cut(s) 419, 915
BspLI GGNNCC 3 cut(s) 69, 556, 1029
BspPI GGATC 3 cut(s) 497, 506, 749
BspT107I GGYRCC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 60, 395, 716, 774, 913, 1080
BssMI GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
BssT1I CCWWGG 1 cut(s) 1080
Bst2UI CCWGG 3 cut(s) 335, 445, 717
Bst6I CTCTTC 2 cut(s) 12, 275
BstBAI YACGTR 1 cut(s) 529
BstC8I GCNNGC 6 cut(s) 49, 340, 344, 429, 553, 582
BstDEI CTNAG 1 cut(s) 1002
BstDSI CCRYGG 2 cut(s) 60, 913
BstF5I GGATG 6 cut(s) 246, 321, 619, 804, 819, 934
BstFNI CGCG 2 cut(s) 419, 915
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 7 cut(s) 190, 289, 501, 505, 534, 744, 1144
BstMAI GTCTC 2 cut(s) 9, 509
BstMBI GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 48, 314, 339, 561
BstNI CCWGG 3 cut(s) 335, 445, 717
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 5 cut(s) 333, 443, 465, 641, 715
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 2 cut(s) 419, 915
BstV1I GCAGC 4 cut(s) 310, 362, 411, 1038
BstV2I GAAGAC 2 cut(s) 675, 762
Bsu15I ATCGAT 1 cut(s) 501
BsuRI GGCC 5 cut(s) 68, 333, 338, 431, 630
BsuTUI ATCGAT 1 cut(s) 501
BtgI CCRYGG 2 cut(s) 60, 913
BtgZI GCGATG 1 cut(s) 88
BtsCI GGATG 6 cut(s) 246, 321, 619, 804, 819, 934
BtsIMutI CAGTG 1 cut(s) 1151
Cac8I GCNNGC 6 cut(s) 49, 340, 344, 429, 553, 582
CfoI GCGC 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 67, 96
Cfr42I CCGCGG 1 cut(s) 916
ClaI ATCGAT 1 cut(s) 501
CseI GACGC 1 cut(s) 418
CspCI CAANNNNNGTGG 2 cut(s) 1127, 1162
CviAII CATG 5 cut(s) 44, 343, 380, 851, 904
DdeI CTNAG 1 cut(s) 1002
DpnI GATC 7 cut(s) 189, 288, 500, 504, 533, 743, 1143
DpnII GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 2 cut(s) 331, 628
Eam1104I CTCTTC 2 cut(s) 12, 275
EarI CTCTTC 2 cut(s) 12, 275
EciI GGCGGA 5 cut(s) 148, 239, 556, 599, 1103
Eco130I CCWWGG 1 cut(s) 1080
Eco47I GGWCC 1 cut(s) 96
Eco47III AGCGCT 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 476
EcoRII CCWGG 3 cut(s) 333, 443, 715
EcoT14I CCWWGG 1 cut(s) 1080
ErhI CCWWGG 1 cut(s) 1080
FaeI CATG 5 cut(s) 47, 346, 383, 854, 907
FaiI YATR 6 cut(s) 45, 344, 381, 437, 852, 905
FatI CATG 5 cut(s) 43, 342, 379, 850, 903
FauI CCCGC 3 cut(s) 56, 287, 544
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 7 cut(s) 30, 66, 299, 376, 425, 1052, 1172
FokI GGATG 6 cut(s) 233, 308, 626, 811, 826, 941
Fsp4HI GCNGC 7 cut(s) 30, 66, 299, 376, 425, 1052, 1172
FspBI CTAG 1 cut(s) 93
GlaI GCGC 1 cut(s) 374
GluI GCNGC 7 cut(s) 30, 66, 299, 376, 425, 1052, 1172
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 5 cut(s) 68, 333, 338, 431, 630
HapII CCGG 5 cut(s) 339, 466, 611, 642, 926
HgaI GACGC 1 cut(s) 418
HhaI GCGC 1 cut(s) 375
Hin1II CATG 5 cut(s) 47, 346, 383, 854, 907
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HinfI GANTC 5 cut(s) 176, 303, 391, 847, 1135
HpaII CCGG 5 cut(s) 339, 466, 611, 642, 926
HphI GGTGA 5 cut(s) 28, 631, 694, 919, 1081
Hpy166II GTNNAC 3 cut(s) 463, 910, 1060
Hpy188I TCNGA 7 cut(s) 121, 399, 547, 775, 1032, 1040, 1109
Hpy188III TCNNGA 6 cut(s) 173, 406, 476, 484, 745, 1139
Hpy8I GTNNAC 3 cut(s) 463, 910, 1060
Hpy99I CGWCG 2 cut(s) 209, 266
HpyAV CCTTC 6 cut(s) 29, 376, 673, 860, 1066, 1111
HpyCH4IV ACGT 4 cut(s) 402, 528, 672, 833
HpyCH4V TGCA 4 cut(s) 153, 827, 861, 994
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 314, 339, 561
HpyF3I CTNAG 1 cut(s) 1002
HpySE526I ACGT 4 cut(s) 402, 528, 672, 833
Hsp92II CATG 5 cut(s) 47, 346, 383, 854, 907
HspAI GCGC 1 cut(s) 373
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 531
KspI CCGCGG 1 cut(s) 916
Kzo9I GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
LmnI GCTCC 1 cut(s) 569
Lsp1109I GCAGC 4 cut(s) 310, 362, 411, 1038
LweI GCATC 3 cut(s) 604, 789, 919
MaeI CTAG 1 cut(s) 93
MaeII ACGT 4 cut(s) 402, 528, 672, 833
MaeIII GTNAC 3 cut(s) 224, 682, 829
MalI GATC 7 cut(s) 189, 288, 500, 504, 533, 743, 1143
MboI GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
MboII GAAGA 7 cut(s) 262, 499, 610, 680, 762, 898, 1030
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 8 cut(s) 383, 448, 523, 688, 758, 872, 1021, 1033
MluI ACGCGT 1 cut(s) 417
MroNI GCCGGC 1 cut(s) 338
MseI TTAA 2 cut(s) 897, 921
MslI CAYNNNNRTG 1 cut(s) 950
MspA1I CMGCKG 1 cut(s) 915
MspI CCGG 5 cut(s) 339, 466, 611, 642, 926
MspR9I CCNGG 5 cut(s) 335, 445, 467, 643, 717
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 3 cut(s) 335, 445, 717
MvnI CGCG 2 cut(s) 419, 915
MwoI GCNNNNNNNGC 4 cut(s) 48, 314, 339, 561
NaeI GCCGGC 1 cut(s) 340
NciI CCSGG 2 cut(s) 467, 643
NdeII GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 5 cut(s) 47, 346, 383, 854, 907
NlaIV GGNNCC 3 cut(s) 69, 556, 1029
NmuCI GTSAC 3 cut(s) 224, 682, 829
NspI RCATGY 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 950
PaeI GCATGC 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 476
PcsI WCGNNNNNNNCGW 1 cut(s) 416
PctI GAATGC 1 cut(s) 829
PdiI GCCGGC 1 cut(s) 340
PfeI GAWTC 5 cut(s) 176, 303, 391, 847, 1135
PflMI CCANNNNNTGG 1 cut(s) 385
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 7 cut(s) 31, 67, 300, 377, 426, 1053, 1173
Ple19I CGATCG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 333, 443, 715
PspGI CCWGG 3 cut(s) 333, 443, 715
PspN4I GGNNCC 3 cut(s) 69, 556, 1029
PspPI GGNCC 2 cut(s) 67, 96
PvuI CGATCG 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 950
SacII CCGCGG 1 cut(s) 916
SaqAI TTAA 2 cut(s) 897, 921
SatI GCNGC 7 cut(s) 30, 66, 299, 376, 425, 1052, 1172
Sau3AI GATC 7 cut(s) 187, 286, 498, 502, 531, 741, 1141
Sau96I GGNCC 2 cut(s) 67, 96
ScrFI CCNGG 5 cut(s) 335, 445, 467, 643, 717
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 3 cut(s) 604, 789, 919
Sfr274I CTCGAG 1 cut(s) 476
Sfr303I CCGCGG 1 cut(s) 916
SgrBI CCGCGG 1 cut(s) 916
SinI GGWCC 1 cut(s) 96
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 346
Sse9I AATT 8 cut(s) 383, 448, 523, 688, 758, 872, 1021, 1033
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 5 cut(s) 333, 443, 465, 641, 715
StyI CCWWGG 1 cut(s) 1080
TaiI ACGT 4 cut(s) 405, 531, 675, 836
TaqI TCGA 6 cut(s) 186, 261, 369, 477, 501, 806
TasI AATT 8 cut(s) 383, 448, 523, 688, 758, 872, 1021, 1033
TauI GCSGC 3 cut(s) 32, 68, 1174
TfiI GAWTC 5 cut(s) 176, 303, 391, 847, 1135
Tru1I TTAA 2 cut(s) 897, 921
Tru9I TTAA 2 cut(s) 897, 921
TscAI CASTG 1 cut(s) 1151
TseFI GTSAC 3 cut(s) 224, 682, 829
TseI GCWGC 4 cut(s) 298, 375, 424, 1051
Tsp45I GTSAC 3 cut(s) 224, 682, 829
TspDTI ATGAA 7 cut(s) 235, 396, 830, 839, 1061, 1130, 1167
TspGWI ACGGA 2 cut(s) 193, 212
TspRI CASTG 1 cut(s) 1151
Van91I CCANNNNNTGG 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 96
XapI RAATTY 2 cut(s) 688, 1033
XceI RCATGY 1 cut(s) 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 848
XhoI CTCGAG 1 cut(s) 476
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.