Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

36068252 .. 36069707

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCCGACCACGTCGTCCGCACCTTCGAGCTTTGCCATGAACTCGGTATCCCCCAGGACATGAAGCTCCTCAATGCCCTGTTATTATCTTGCGTTTTCGCCGAGGATTACAAAGAGGTCACTCGGATTTACCGCGACTTTCCGAAGATTTATGGGATCGAGCCAAATCTGGACACTTACAATTGCGCACTCAAATCCCTTTCGAAATCCGGTTCCACCAGCACTGCCTACTCTGTTTTGGCGGAGATGGAGAGGAGGAGGATCGAGCCGGATGGGAACACATTCGGGCACTTGCTTTCGGGGTTTTACAGCGAGGAGAGGTTTGAGGATGTGGGAAATGTGATCAATTTGATGGAGAATTTGGGTTCCAATCGGGGCTTAATACCTACAACGTTAGGATTCGGAGTCTTTGAGGGGAATTTGGAGCAAGGGAAGAAGATGTTTGAGAAGATGGTGGAGAAGGGGTTTAAGCCGGATTGCAACTGCTATTATACTCTAGTGTACTACTTGTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

172

Amino Acids

19.62

Weight (kDa)

5.13

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 102	7.7e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	187
AccII	CGCG	1 cut(s)	135
AciI	CCGC	3 cut(s)	19, 133, 242
AclI	AACGTT	1 cut(s)	392
AclWI	GGATC	2 cut(s)	164, 269
AcsI	RAATTY	2 cut(s)	358, 418
AfaI	GTAC	1 cut(s)	503
AjiI	CACGTC	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	54
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	2 cut(s)	31, 67
AluI	AGCT	2 cut(s)	31, 67
Alw21I	GWGCWC	1 cut(s)	515
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	2 cut(s)	164, 269
ApaLI	GTGCAC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	358, 418
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	203
BaeGI	GKGCMC	2 cut(s)	291, 515
Bbv12I	GWGCWC	1 cut(s)	515
BccI	CCATC	4 cut(s)	241, 266, 346, 445
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	214, 367
BmrFI	CCNGG	1 cut(s)	56
Bpu14I	TTCGAA	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	54, 102
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	54, 102
BseGI	GGATG	2 cut(s)	277, 334
BseRI	GAGGAG	4 cut(s)	59, 268, 271, 329
BseSI	GKGCMC	2 cut(s)	291, 515
Bsh1236I	CGCG	1 cut(s)	135
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	3 cut(s)	210, 269, 473
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	291, 515
Bsp143I	GATC	3 cut(s)	156, 261, 342
BspACI	CCGC	3 cut(s)	19, 133, 242
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	214, 367
BspPI	GGATC	2 cut(s)	164, 269
BspT104I	TTCGAA	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	54, 102
BssMI	GATC	3 cut(s)	156, 261, 342
Bst2UI	CCWGG	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	277, 334
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	159, 264, 345
BstMBI	GATC	3 cut(s)	156, 261, 342
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	2 cut(s)	291, 515
BstUI	CGCG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	277, 334
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	3 cut(s)	38, 61, 516
CviJI	RGCY	6 cut(s)	31, 67, 163, 268, 378, 472
CviKI_1	RGCY	6 cut(s)	31, 67, 163, 268, 378, 472
CviQI	GTAC	1 cut(s)	502
DpnI	GATC	3 cut(s)	158, 263, 344
DpnII	GATC	3 cut(s)	156, 261, 342
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EciI	GGCGGA	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	41, 64, 519
FaiI	YATR	5 cut(s)	39, 62, 153, 492, 517
FatI	CATG	3 cut(s)	37, 60, 515
FbaI	TGATCA	1 cut(s)	342
FokI	GGATG	2 cut(s)	284, 341
FspBI	CTAG	1 cut(s)	497
FspI	TGCGCA	1 cut(s)	187
GlaI	GCGC	1 cut(s)	187
HapII	CCGG	3 cut(s)	210, 269, 473
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	41, 64, 519
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	399, 405
HpaII	CCGG	3 cut(s)	210, 269, 473
Hpy166II	GTNNAC	2 cut(s)	502, 513
Hpy188I	TCNGA	3 cut(s)	126, 144, 404
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	502, 513
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	34, 454
HpyCH4IV	ACGT	2 cut(s)	12, 392
HpyCH4V	TGCA	2 cut(s)	480, 513
HpySE526I	ACGT	2 cut(s)	12, 392
Hsp92II	CATG	3 cut(s)	41, 64, 519
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	156, 261, 342
LmnI	GCTCC	2 cut(s)	72, 424
LpnPI	CCDG	8 cut(s)	41, 68, 92, 155, 223, 232, 282, 486
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	2 cut(s)	12, 392
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	158, 263, 344
MboI	GATC	3 cut(s)	156, 261, 342
MboII	GAAGA	4 cut(s)	157, 445, 448, 460
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	291, 515
MluCI	AATT	4 cut(s)	181, 346, 358, 418
MlyI	GAGTC	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	2 cut(s)	380, 468
MspI	CCGG	3 cut(s)	210, 269, 473
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	135
NdeII	GATC	3 cut(s)	156, 261, 342
NlaIII	CATG	3 cut(s)	41, 64, 519
NlaIV	GGNNCC	2 cut(s)	214, 367
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	11
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	214, 367
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	380, 468
Sau3AI	GATC	3 cut(s)	156, 261, 342
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	291, 515
SetI	ASST	8 cut(s)	15, 26, 33, 69, 120, 323, 388, 395
SfuI	TTCGAA	1 cut(s)	203
Sse9I	AATT	4 cut(s)	181, 346, 358, 418
SsiI	CCGC	3 cut(s)	19, 133, 242
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	54
TaiI	ACGT	2 cut(s)	15, 395
TaqI	TCGA	4 cut(s)	27, 159, 203, 264
TasI	AATT	4 cut(s)	181, 346, 358, 418
TatI	WGTACW	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	399
Tru1I	TTAA	2 cut(s)	380, 468
Tru9I	TTAA	2 cut(s)	380, 468
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	54, 77
TspRI	CASTG	1 cut(s)	229
Tth111I	GACNNNGTC	1 cut(s)	11
VneI	GTGCAC	1 cut(s)	511
XapI	RAATTY	2 cut(s)	358, 418
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.