Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Reverse (-)

9966703 .. 9967316

Gene Structure 614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0111800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCTGGACCAGCTGGCGGACCAAATGTCCAAGGCGGCAGACGAGGTCAGCTCGTCGAAGCAATCCTCAATCCTCAATCCTCAATCGCTTCCCTTTGAGCTCCTCCGAGCTCAGCGCTTCCCCCACTTTGCAACTATAAGCAGCGCCAAGGCCATCAGCCTCGAGGAGATCAAAAATGAGTCCGTCGATCTGGTATACAACACTCTCTCTTTCTTTCTCTTTCTCTCTGACTCTGCTGCATGCGTTTGGTTTGCTCAGAAGAAAACGAAACCAAACGCCGTGAGAATTTTGGAGTTGACGCGTGGGCGACACAGGAGCTCGATTCGGAGTCGAGGAGTTGGGGGAGAGATCGGAAATCTTCGACCGGAGCTTGGAGAATGCAATGGTCAGGTCGATGGAGATGATCTGGGTCTCGCCGCCGACGTAGCGGAGCTTCCCAGACGGTGGCCGGGGGTGGAATGCGATGTTGGAGCTGCAGACGAGCTTGAGCTTCTTAGGTTGGGTGTGGTCGGTAGTGGGCTGGGTGTGGTTGGTAATGAGCTTCCGATTTGGATTTGGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

188

Amino Acids

20.52

Weight (kDa)

4.88

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	444
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	301
AciI	CCGC	4 cut(s)	17, 35, 417, 428
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	285
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	3 cut(s)	16, 371, 444
AflIII	ACRYGT	1 cut(s)	299
AhdI	GACNNNNNGTC	1 cut(s)	25
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
Alw21I	GWGCWC	3 cut(s)	102, 112, 320
Alw26I	GTCTC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	161
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	2 cut(s)	150, 446
ApeKI	GCWGC	3 cut(s)	141, 236, 473
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	2 cut(s)	117, 146
AspS9I	GGNCC	2 cut(s)	7, 19
AsuC2I	CCSGG	1 cut(s)	450
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	7, 19
BanII	GRGCYC	3 cut(s)	102, 112, 320
BarI	GAAGNNNNNNTAC	2 cut(s)	417, 449
Bbv12I	GWGCWC	3 cut(s)	102, 112, 320
BbvI	GCAGC	3 cut(s)	153, 223, 460
BccI	CCATC	2 cut(s)	161, 389
BceAI	ACGGC	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	2 cut(s)	118, 147
BisI	GCNGC	5 cut(s)	36, 142, 237, 417, 474
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	5 cut(s)	37, 143, 238, 418, 475
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	2 cut(s)	7, 19
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	7, 19
BmrFI	CCNGG	1 cut(s)	450
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
Bpu1102I	GCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	30, 147, 449
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 371, 444
Bse3DI	GCAATG	1 cut(s)	388
BseDI	CCNNGG	3 cut(s)	30, 147, 449
BseLI	CCNNNNNNNGG	3 cut(s)	16, 371, 444
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	125, 269
BseRI	GAGGAG	3 cut(s)	92, 179, 348
BseXI	GCAGC	3 cut(s)	153, 223, 460
BseYI	CCCAGC	1 cut(s)	520
Bsh1236I	CGCG	1 cut(s)	301
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	152, 448
BsiEI	CGRYCG	1 cut(s)	365
BsiHKAI	GWGCWC	3 cut(s)	102, 112, 320
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	365, 449
BslI	CCNNNNNNNGG	3 cut(s)	16, 371, 444
BsmAI	GTCTC	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	383, 464
BsnI	GGCC	2 cut(s)	152, 448
Bso31I	GGTCTC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	3 cut(s)	102, 112, 320
Bsp143I	GATC	4 cut(s)	168, 187, 348, 403
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	4 cut(s)	17, 35, 417, 428
BspANI	GGCC	2 cut(s)	152, 448
BspCNI	CTCAG	2 cut(s)	124, 268
BspFNI	CGCG	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	478
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	388
BssECI	CCNNGG	3 cut(s)	30, 147, 449
BssMI	GATC	4 cut(s)	168, 187, 348, 403
BssNAI	GTATAC	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	30, 147
Bst1107I	GTATAC	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	15, 241
BstDEI	CTNAG	3 cut(s)	111, 255, 494
BstFNI	CGCG	1 cut(s)	301
BstH2I	RGCGCY	2 cut(s)	118, 147
BstHHI	GCGC	2 cut(s)	117, 146
BstKTI	GATC	4 cut(s)	171, 190, 351, 406
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	4 cut(s)	168, 187, 348, 403
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 425
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	153, 223, 460
BstZ17I	GTATAC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	152, 448
BtgZI	GCGATG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	15, 241
CfoI	GCGC	2 cut(s)	117, 146
Cfr13I	GGNCC	2 cut(s)	7, 19
CseI	GACGC	1 cut(s)	307
CviAII	CATG	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	111, 255, 494
DpnI	GATC	4 cut(s)	170, 189, 350, 405
DpnII	GATC	4 cut(s)	168, 187, 348, 403
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	446
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	3 cut(s)	100, 110, 318
Eco130I	CCWWGG	2 cut(s)	30, 147
Eco24I	GRGCYC	3 cut(s)	102, 112, 320
Eco31I	GGTCTC	1 cut(s)	416
Eco47I	GGWCC	2 cut(s)	7, 19
Eco47III	AGCGCT	1 cut(s)	116
Eco53kI	GAGCTC	3 cut(s)	100, 110, 318
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	3 cut(s)	100, 110, 318
EcoT14I	CCWWGG	2 cut(s)	30, 147
EcoT38I	GRGCYC	3 cut(s)	102, 112, 320
ErhI	CCWWGG	2 cut(s)	30, 147
FaeI	CATG	1 cut(s)	243
FaiI	YATR	3 cut(s)	137, 196, 241
FatI	CATG	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	36, 142, 237, 417, 474
FriOI	GRGCYC	3 cut(s)	102, 112, 320
Fsp4HI	GCNGC	5 cut(s)	36, 142, 237, 417, 474
GlaI	GCGC	2 cut(s)	116, 145
GluI	GCNGC	5 cut(s)	36, 142, 237, 417, 474
GsaI	CCCAGC	1 cut(s)	524
HaeII	RGCGCY	2 cut(s)	118, 147
HaeIII	GGCC	2 cut(s)	152, 448
HapII	CCGG	2 cut(s)	365, 449
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	2 cut(s)	117, 146
Hin1II	CATG	1 cut(s)	243
Hin6I	GCGC	2 cut(s)	115, 144
HinP1I	GCGC	2 cut(s)	115, 144
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	4 cut(s)	179, 230, 322, 328
HpaII	CCGG	2 cut(s)	365, 449
Hpy166II	GTNNAC	2 cut(s)	196, 297
Hpy188I	TCNGA	6 cut(s)	107, 229, 258, 327, 353, 546
Hpy8I	GTNNAC	2 cut(s)	196, 297
Hpy99I	CGWCG	3 cut(s)	58, 188, 425
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	4 cut(s)	131, 239, 381, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 425
HpyF3I	CTNAG	3 cut(s)	111, 255, 494
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	243
HspAI	GCGC	2 cut(s)	115, 144
Kzo9I	GATC	4 cut(s)	168, 187, 348, 403
LmnI	GCTCC	5 cut(s)	105, 315, 367, 430, 470
LpnPI	CCDG	9 cut(s)	23, 176, 298, 374, 378, 392, 451, 462, 506
Lsp1109I	GCAGC	3 cut(s)	153, 223, 460
MaeII	ACGT	1 cut(s)	423
MalI	GATC	4 cut(s)	170, 189, 350, 405
MboI	GATC	4 cut(s)	168, 187, 348, 403
MboII	GAAGA	2 cut(s)	271, 350
MhlI	GDGCHC	3 cut(s)	102, 112, 320
MluCI	AATT	1 cut(s)	285
MluI	ACGCGT	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	188, 224, 337
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	8 cut(s)	37, 76, 83, 90, 113, 157, 170, 326
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	365, 449
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	2 cut(s)	383, 464
MvnI	CGCG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	10, 425
NciI	CCSGG	1 cut(s)	450
NdeII	GATC	4 cut(s)	168, 187, 348, 403
NlaIII	CATG	1 cut(s)	243
NspI	RCATGY	1 cut(s)	243
PaeI	GCATGC	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	161
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	2 cut(s)	383, 464
PfeI	GAWTC	1 cut(s)	322
PflFI	GACNNNGTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	444
PkrI	GCNGC	5 cut(s)	37, 143, 238, 418, 475
PleI	GAGTC	3 cut(s)	187, 224, 336
PpsI	GAGTC	3 cut(s)	187, 224, 336
Psp124BI	GAGCTC	3 cut(s)	102, 112, 320
PspFI	CCCAGC	1 cut(s)	520
PspPI	GGNCC	2 cut(s)	7, 19
PspXI	VCTCGAGB	1 cut(s)	161
PstI	CTGCAG	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	13
SacI	GAGCTC	3 cut(s)	102, 112, 320
SatI	GCNGC	5 cut(s)	36, 142, 237, 417, 474
Sau3AI	GATC	4 cut(s)	168, 187, 348, 403
Sau96I	GGNCC	2 cut(s)	7, 19
SchI	GAGTC	3 cut(s)	188, 224, 337
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	3 cut(s)	102, 112, 320
SfcI	CTRYAG	1 cut(s)	474
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	2 cut(s)	7, 19
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	161, 485
SmoI	CTYRAG	2 cut(s)	161, 485
SphI	GCATGC	1 cut(s)	243
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	4 cut(s)	17, 35, 417, 428
SstI	GAGCTC	3 cut(s)	102, 112, 320
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	30, 147
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	7 cut(s)	56, 162, 186, 320, 331, 361, 393
TasI	AATT	1 cut(s)	285
TauI	GCSGC	2 cut(s)	38, 419
TfiI	GAWTC	1 cut(s)	322
TseI	GCWGC	3 cut(s)	141, 236, 473
TspGWI	ACGGA	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	7, 19
XapI	RAATTY	1 cut(s)	285
XceI	RCATGY	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.