Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

1115906 .. 1117084

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G023500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCTCTATTATCTCGCCTCCGCCATGCTACGCTCGCCCACCACACTCGCCACCTCTCCACCGCCGCCTCAGTCTCCACCAAGGACAAGACCAGAGCTGCCCTCTCTCTCCTCAAGGCCGAGAAAGACCCCACCAAAATCCTCGAAATCTGCAAAACCGCGTGCCTAACCCCCGAGTCTCACCTTGACCGCATCACCTTCTCCGCCGATATGCTCCACGACGCCGTTCGCACTTTCGAACAGTGCGACGAAATGGGTATCCCTCGGAACGTGAAAACGCTCAACGCTCTGTTGCTTGCTTGCATTTTTGCCAAGAATTACAAGGAGGTAAATAGGGTTTTTCTAGAGTTCCCAAAAGTTTATGGGATTGAGCCCAATTTGGATACTTACAATTATGTGATCAAGGCGTTTTCGGAGTCTGGTTCGACGAGCTCGGCCTATTCGGTGTTGGCCGAGATGGAGAGGAAGAATGTGAAGCCGAATGCGAATACTTTTGGGCATTTGCTTACAGGGTTTTATACTGAGATGAAGTTTGAAGATGTTGGGAAGGTGACGAATTTGATGGAGAAGCATGGGTTTCAACCTGGGCTTAGTACATATAACATTAGGATCAAGAGTTTGTGCAAGTTGAGGAAGTCTGCGGAGGCCAAGGCATTGTTAGATGGAATGTTGTCTAGGGGTATGAAGGCAAATGCAGTCACTTACTGCCATTTGATTCATGGGTTTTGCAGGGAAAGCAATTTGGGTGAAGCAAAGAAGCTGTTTAAGAATATGGTGAACAGGGGCTTCACGCCTGATTCTGACTGCTATTATACTCTTGTTCACTTTCTATGCAAAGGTGGGGAGTTTGAGAGTGCTTTGCAGTATGCTAAGGAGAGTATTGAGAAGAATTGGGTTCCAAATTTCGCAACGATTAAGTCCCTTGTGGAAGGGCTTGTGAGCATTTCCAAGGTATCAGAGGCTCGGGAGCTTGTTGGGCAAATGAAGGAGAGATTCACAGTAAATCAAGATAAGTGGAATGAAATTGAAGCTGGCCTGCCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

349

Amino Acids

39.16

Weight (kDa)

8.89

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	161
AciI	CCGC	7 cut(s)	22, 63, 66, 159, 190, 204, 641
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	556, 901
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	595
AgsI	TTSAA	3 cut(s)	536, 581, 1028
AjnI	CCWGG	1 cut(s)	583
AluBI	AGCT	5 cut(s)	98, 432, 760, 970, 1031
AluI	AGCT	5 cut(s)	98, 432, 760, 970, 1031
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	3 cut(s)	9, 79, 183
AlwI	GGATC	1 cut(s)	617
Ama87I	CYCGRG	2 cut(s)	173, 963
AoxI	GGCC	5 cut(s)	117, 435, 450, 645, 1033
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	556, 901
AsuHPI	GGTGA	5 cut(s)	173, 187, 562, 758, 787
AsuII	TTCGAA	1 cut(s)	237
AvaI	CYCGRG	2 cut(s)	173, 963
BanII	GRGCYC	2 cut(s)	375, 434
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	451, 556, 656
BceAI	ACGGC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	585
BciVI	GTATCC	2 cut(s)	269, 376
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	3 cut(s)	9, 79, 183
BfaI	CTAG	2 cut(s)	344, 675
BfuI	GTATCC	2 cut(s)	269, 376
BisI	GCNGC	2 cut(s)	66, 99
BlsI	GCNGC	2 cut(s)	67, 100
Bme1390I	CCNGG	1 cut(s)	585
BmeT110I	CYCGRG	2 cut(s)	173, 963
BmiI	GGNNCC	1 cut(s)	897
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
Bpu10I	CCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	5 cut(s)	81, 263, 584, 648, 948
BseBI	CCWGG	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	81, 263, 584, 648, 948
BseMII	CTCAG	2 cut(s)	84, 513
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	161
BshFI	GGCC	5 cut(s)	119, 437, 452, 647, 1035
BsiHKAI	GWGCWC	1 cut(s)	434
BsiHKCI	CYCGRG	2 cut(s)	173, 963
BslFI	GGGAC	1 cut(s)	904
BsmAI	GTCTC	3 cut(s)	9, 79, 183
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	5 cut(s)	119, 437, 452, 647, 1035
BsoBI	CYCGRG	2 cut(s)	173, 963
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	375, 434
Bsp143I	GATC	2 cut(s)	399, 609
BspACI	CCGC	7 cut(s)	22, 63, 66, 159, 190, 204, 641
BspANI	GGCC	5 cut(s)	119, 437, 452, 647, 1035
BspCNI	CTCAG	2 cut(s)	83, 514
BspFNI	CGCG	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	897
BspPI	GGATC	1 cut(s)	617
BspT104I	TTCGAA	1 cut(s)	237
BssECI	CCNNGG	5 cut(s)	81, 263, 584, 648, 948
BssMI	GATC	2 cut(s)	399, 609
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	3 cut(s)	81, 648, 948
Bst2UI	CCWGG	1 cut(s)	585
Bst4CI	ACNGT	3 cut(s)	243, 1000, 1044
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	6 cut(s)	36, 163, 297, 301, 1033, 1037
BstDEI	CTNAG	4 cut(s)	70, 522, 590, 870
BstFNI	CGCG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	402, 612
BstMAI	GTCTC	3 cut(s)	9, 79, 183
BstMBI	GATC	2 cut(s)	399, 609
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 735, 976
BstNI	CCWGG	1 cut(s)	585
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	161
BstV1I	GCAGC	1 cut(s)	85
BsuI	GTATCC	2 cut(s)	269, 376
BsuRI	GGCC	5 cut(s)	119, 437, 452, 647, 1035
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	6 cut(s)	36, 163, 297, 301, 1033, 1037
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	594
CspCI	CAANNNNNGTGG	2 cut(s)	995, 1030
CviAII	CATG	3 cut(s)	26, 572, 719
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	4 cut(s)	70, 522, 590, 870
DpnI	GATC	2 cut(s)	401, 611
DpnII	GATC	2 cut(s)	399, 609
EaeI	YGGCCR	1 cut(s)	450
EciI	GGCGGA	2 cut(s)	11, 193
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	3 cut(s)	81, 648, 948
Eco24I	GRGCYC	2 cut(s)	375, 434
Eco53kI	GAGCTC	1 cut(s)	432
Eco88I	CYCGRG	2 cut(s)	173, 963
EcoICRI	GAGCTC	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	583
EcoT14I	CCWWGG	3 cut(s)	81, 648, 948
EcoT38I	GRGCYC	2 cut(s)	375, 434
ErhI	CCWWGG	3 cut(s)	81, 648, 948
FaeI	CATG	3 cut(s)	29, 575, 722
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	3 cut(s)	25, 571, 718
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	66, 99
FriOI	GRGCYC	2 cut(s)	375, 434
Fsp4HI	GCNGC	2 cut(s)	66, 99
FspBI	CTAG	2 cut(s)	344, 675
GluI	GCNGC	2 cut(s)	66, 99
HaeIII	GGCC	5 cut(s)	119, 437, 452, 647, 1035
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	29, 575, 722
HinfI	GANTC	5 cut(s)	176, 416, 715, 797, 993
HphI	GGTGA	5 cut(s)	173, 187, 562, 758, 787
Hpy166II	GTNNAC	2 cut(s)	778, 823
Hpy188I	TCNGA	4 cut(s)	267, 415, 802, 958
Hpy188III	TCNNGA	4 cut(s)	344, 613, 965, 1007
Hpy8I	GTNNAC	2 cut(s)	778, 823
Hpy99I	CGWCG	3 cut(s)	224, 251, 430
HpyAV	CCTTC	5 cut(s)	208, 541, 679, 923, 979
HpyCH4III	ACNGT	3 cut(s)	243, 1000, 1044
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	7 cut(s)	153, 303, 624, 695, 729, 834, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 735, 976
HpyF3I	CTNAG	4 cut(s)	70, 522, 590, 870
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	29, 575, 722
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	399, 609
LmnI	GCTCC	2 cut(s)	219, 967
LpnPI	CCDG	9 cut(s)	106, 405, 495, 570, 597, 715, 766, 807, 1017
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	344, 675
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	2 cut(s)	550, 697
MalI	GATC	2 cut(s)	401, 611
MboI	GATC	2 cut(s)	399, 609
MboII	GAAGA	3 cut(s)	478, 548, 898
MhlI	GDGCHC	2 cut(s)	375, 434
MluCI	AATT	8 cut(s)	316, 376, 391, 556, 739, 889, 901, 1023
MlyI	GAGTC	2 cut(s)	185, 425
MseI	TTAA	2 cut(s)	765, 915
MspR9I	CCNGG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	35, 735, 976
NdeII	GATC	2 cut(s)	399, 609
NlaIII	CATG	3 cut(s)	29, 575, 722
NlaIV	GGNNCC	1 cut(s)	897
NmeAIII	GCCGAG	3 cut(s)	145, 413, 478
NmuCI	GTSAC	2 cut(s)	550, 697
NspV	TTCGAA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	715, 797, 993
PkrI	GCNGC	2 cut(s)	67, 100
PleI	GAGTC	2 cut(s)	184, 424
PpsI	GAGTC	2 cut(s)	184, 424
Psp124BI	GAGCTC	1 cut(s)	434
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	897
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	765, 915
SatI	GCNGC	2 cut(s)	66, 99
Sau3AI	GATC	2 cut(s)	399, 609
SchI	GAGTC	2 cut(s)	185, 425
ScrFI	CCNGG	1 cut(s)	585
SduI	GDGCHC	2 cut(s)	375, 434
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	8 cut(s)	316, 376, 391, 556, 739, 889, 901, 1023
SsiI	CCGC	7 cut(s)	22, 63, 66, 159, 190, 204, 641
SspMI	CTAG	2 cut(s)	344, 675
SstI	GAGCTC	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	583
StyI	CCWWGG	3 cut(s)	81, 648, 948
TaaI	ACNGT	3 cut(s)	243, 1000, 1044
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	144, 237, 425
TasI	AATT	8 cut(s)	316, 376, 391, 556, 739, 889, 901, 1023
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	3 cut(s)	715, 797, 993
Tru1I	TTAA	2 cut(s)	765, 915
Tru9I	TTAA	2 cut(s)	765, 915
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	550, 697
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	2 cut(s)	550, 697
TspDTI	ATGAA	5 cut(s)	542, 698, 707, 998, 1035
TspRI	CASTG	1 cut(s)	248
XapI	RAATTY	2 cut(s)	556, 901
XbaI	TCTAGA	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	716
XspI	CTAG	2 cut(s)	344, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.