Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

2250195 .. 2251361

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCCCGACCACGCCGTCCGCACCTTCGAGCTTTGCCATGAACTCGGTATCCCCCAGGACGTGAAGCTCCTCAATGCCCTGTTATTATCTTGCGTTTTCGCCGAGGATTACAAAGAGGTCACTCGGATTTACCGCGACTTTCCGAAGATTTATGGGATCGAGCCAAATCTGGACACTTACAATTGCGCACTCAAATCCCTTTCGGAATCCGGTTCCACCAGCTCTGCCTACTCTGTCTTGGCGGAGATGGAGAGGAGGCGGATCAAGCCGGATGGGAACACGTTCGGGCACTTGCTTTCGGGGTTTTACAGCGAGGAGAGGTTTGAGGATGTGGGAAATGTGATCAATTTGATGGAGAAGCATGGGTTCCAACCGGGGCTTGATACCTACAACGTTAGGATTCGGAGTCTTTGTAAGTTGAAGAAGTCGATGGAGGCAGAGGCGTTGTTGGATGGGATGTTGGGGAGGGGTATCAAGCCGAATGCGGTCACGTTTTGCCATTTGATTCTCGGGTTTTGCAAGGAGGGGAATTTGGAGAAAGGGAAGAAGATGTTTGAGAAGATGGTGGAGAGGGGGTTTGAGCCGGATTGCAACTGCTATTATACTCTGGTGTACTACTTGTGCACAGGAGGGGATTTCGAGAGTGCGTTGAGGTTTGCTAAGGAGAGCATTGAGAAGAATTGGGTGCCGAATTTTGCTACGATGAGGTTGCTTGTGGATGGACTTGTGAGCATTGGGAAGGTGGCTGAGGCTCGCCAGCTTATCGGCCAGATGAAGGAGAAGTTCACTGTGAATCAACATAGGTGGAGTGAAGTTGAAGAAGGCTTGCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

278

Amino Acids

31.63

Weight (kDa)

5.95

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	55 - 102	5.3e-08	PPR repeat family
PPR_3	PF13812	78 - 132	1.6e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	94 - 139	2.6e-06	PPR repeat family
PPR_2	PF13041	128 - 174	4.2e-10	PPR repeat family
PPR_3	PF13812	149 - 202	2.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	156 - 189	2.8e-10	PPR repeat
PPR_2	PF13041	163 - 208	1.9e-09	PPR repeat family
PPR	PF01535	163 - 193	2.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	14
Acc16I	TGCGCA	1 cut(s)	187
AccB1I	GGYRCC	1 cut(s)	685
AccII	CGCG	1 cut(s)	135
AciI	CCGC	5 cut(s)	19, 133, 242, 259, 485
AclI	AACGTT	1 cut(s)	393
AclWI	GGATC	2 cut(s)	164, 269
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	2 cut(s)	529, 691
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	2 cut(s)	421, 818
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	54
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	31, 67, 222, 760
AluI	AGCT	4 cut(s)	31, 67, 222, 760
Alw21I	GWGCWC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	622
AlwI	GGATC	2 cut(s)	164, 269
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	766
ApaLI	GTGCAC	1 cut(s)	622
ApoI	RAATTY	2 cut(s)	529, 691
Asp700I	GAANNNNTTC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	375
AvaI	CYCGRG	1 cut(s)	509
BaeGI	GKGCMC	2 cut(s)	291, 626
BanI	GGYRCC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	626
BbvCI	CCTCAGC	1 cut(s)	747
BccI	CCATC	7 cut(s)	241, 266, 346, 424, 446, 556, 713
BcgI	CGANNNNNNTGC	2 cut(s)	691, 725
BciT130I	CCWGG	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	375
BfuI	GTATCC	1 cut(s)	59
Bme1390I	CCNGG	2 cut(s)	56, 375
BmeT110I	CYCGRG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	214, 368, 687
BmrFI	CCNGG	2 cut(s)	56, 375
Bpu10I	CCTNAGC	2 cut(s)	660, 747
BpuMI	CCSGG	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	54, 102, 374
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	397, 427, 560, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	54, 102, 374
BseGI	GGATG	5 cut(s)	277, 334, 457, 462, 724
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMII	CTCAG	1 cut(s)	738
BseRI	GAGGAG	3 cut(s)	59, 268, 329
BseSI	GKGCMC	2 cut(s)	291, 626
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	768
BshNI	GGYRCC	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	4 cut(s)	210, 269, 374, 584
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	768
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	291, 626
Bsp143I	GATC	3 cut(s)	156, 261, 342
BspACI	CCGC	5 cut(s)	19, 133, 242, 259, 485
BspANI	GGCC	1 cut(s)	768
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	3 cut(s)	214, 368, 687
BspPI	GGATC	2 cut(s)	164, 269
BspT107I	GGYRCC	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	54, 102, 374
BssMI	GATC	3 cut(s)	156, 261, 342
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	2 cut(s)	790, 834
BstC8I	GCNNGC	3 cut(s)	754, 758, 827
BstDEI	CTNAG	2 cut(s)	660, 747
BstF5I	GGATG	5 cut(s)	277, 334, 457, 462, 724
BstFNI	CGCG	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	159, 264, 345
BstMBI	GATC	3 cut(s)	156, 261, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	54, 373
BstSLI	GKGCMC	2 cut(s)	291, 626
BstUI	CGCG	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	768
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	5 cut(s)	277, 334, 457, 462, 724
BtsIMutI	CAGTG	1 cut(s)	786
Cac8I	GCNNGC	3 cut(s)	754, 758, 827
CfoI	GCGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	613
CspCI	CAANNNNNGTGG	2 cut(s)	785, 820
CviAII	CATG	2 cut(s)	38, 362
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	2 cut(s)	660, 747
DpnI	GATC	3 cut(s)	158, 263, 344
DpnII	GATC	3 cut(s)	156, 261, 342
DrdI	GACNNNNNNGTC	1 cut(s)	14
DseDI	GACNNNNNNGTC	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	766
EciI	GGCGGA	2 cut(s)	257, 274
Eco88I	CYCGRG	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	41, 365
FaiI	YATR	5 cut(s)	39, 153, 363, 603, 801
FatI	CATG	2 cut(s)	37, 361
FbaI	TGATCA	1 cut(s)	342
FokI	GGATG	5 cut(s)	284, 341, 464, 469, 731
FspI	TGCGCA	1 cut(s)	187
GlaI	GCGC	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	768
HapII	CCGG	4 cut(s)	210, 269, 374, 584
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	41, 365
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	5 cut(s)	206, 400, 406, 505, 793
HpaII	CCGG	4 cut(s)	210, 269, 374, 584
Hpy166II	GTNNAC	3 cut(s)	613, 624, 786
Hpy188I	TCNGA	4 cut(s)	126, 144, 205, 405
Hpy188III	TCNNGA	2 cut(s)	170, 640
Hpy8I	GTNNAC	3 cut(s)	613, 624, 786
HpyAV	CCTTC	4 cut(s)	34, 733, 769, 815
HpyCH4III	ACNGT	2 cut(s)	790, 834
HpyCH4IV	ACGT	4 cut(s)	60, 281, 393, 491
HpyCH4V	TGCA	3 cut(s)	519, 591, 624
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	2 cut(s)	660, 747
HpySE526I	ACGT	4 cut(s)	60, 281, 393, 491
Hsp92II	CATG	2 cut(s)	41, 365
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	3 cut(s)	156, 261, 342
LmnI	GCTCC	1 cut(s)	72
MaeII	ACGT	4 cut(s)	60, 281, 393, 491
MaeIII	GTNAC	2 cut(s)	118, 487
MalI	GATC	3 cut(s)	158, 263, 344
MboI	GATC	3 cut(s)	156, 261, 342
MboII	GAAGA	7 cut(s)	157, 433, 556, 559, 571, 688, 830
MfeI	CAATTG	1 cut(s)	181
MhlI	GDGCHC	2 cut(s)	291, 626
MluCI	AATT	5 cut(s)	181, 346, 529, 679, 691
MlyI	GAGTC	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	394, 429
MroXI	GAANNNNTTC	1 cut(s)	281
MspI	CCGG	4 cut(s)	210, 269, 374, 584
MspR9I	CCNGG	2 cut(s)	56, 375
MunI	CAATTG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	56
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	265
NciI	CCSGG	1 cut(s)	375
NdeII	GATC	3 cut(s)	156, 261, 342
NlaIII	CATG	2 cut(s)	41, 365
NlaIV	GGNNCC	3 cut(s)	214, 368, 687
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	118, 487
NsbI	TGCGCA	1 cut(s)	187
PctI	GAATGC	1 cut(s)	487
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	4 cut(s)	206, 400, 505, 793
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Psp1406I	AACGTT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	214, 368, 687
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
Sau3AI	GATC	3 cut(s)	156, 261, 342
SchI	GAGTC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	56, 375
SduI	GDGCHC	2 cut(s)	291, 626
Sse9I	AATT	5 cut(s)	181, 346, 529, 679, 691
SsiI	CCGC	5 cut(s)	19, 133, 242, 259, 485
StyD4I	CCNGG	2 cut(s)	54, 373
TaaI	ACNGT	2 cut(s)	790, 834
TaiI	ACGT	4 cut(s)	63, 284, 396, 494
TaqI	TCGA	4 cut(s)	27, 159, 428, 639
TasI	AATT	5 cut(s)	181, 346, 529, 679, 691
TatI	WGTACW	1 cut(s)	612
TfiI	GAWTC	4 cut(s)	206, 400, 505, 793
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	2 cut(s)	118, 487
Tsp45I	GTSAC	2 cut(s)	118, 487
TspDTI	ATGAA	2 cut(s)	54, 788
TspRI	CASTG	1 cut(s)	793
VneI	GTGCAC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	529, 691
XmnI	GAANNNNTTC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.