Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Reverse (-)

22864951 .. 22866666

Gene Structure 1716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G61870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCGTTACTCTCTCGAATCCGTTCATCAACATCTCTCTTCCGTCACCTCAACGCATCACCACAAATCCGATCACTCTCCTCGGCTTCAACAATCCTCTCACCAGATTCAAAAACTCCTCTCACAAGCAAAGAAAAAAGCAAAGCAGCTCTCTCTCTTCTCAAATCCGAGAAAGATCCAGATCGTATCCTCGAAATCTGCCGTGCAGCTTCTCTTACTCCAGATTGCCGCATAGATCGAATCGCTTTCTCCGCCGCCGTCGAGAATCTCGCCGAGAAGAAACATTTCTCCGCTGTATCGAATCTCCTCGACGGATTCATCGAAAACAGACCAGATCTCAAATCGGAACGTTTTGCTGCTCACGCCATTGTTTTGTATGCTCAAGCTAATATGCTTGATCACTCTTTAAGAGTTTTTCGTGATCTCGAGAAATTCGAAATCTCTCGTACGGTGAAGTCTTTAAACGCGCTTCTCTTTGCTTGTTTAGTAGCTAAGGATTACAAAGAAGCTAAAAGAGTTTACATTGAGATGCCTAAGATGTATGGAATTGAACCTGATCTCGAGACTTATAATCGTATGATCAAAGTGTTTTGTGAATCCGGTTCAGCGAGTTCGTCGTACTCCATTGTTGCGGAGATGGAGAGGAAAGGGATAAAGCCGAATAGTTCAAGCTTTGGTTTGATGATTTCTGGGTTTTATGCAGAGGATAAGAGTGATGAAGTAGGGAAAGTGTTGGCGATGATGAAAGATCGTGGTGTTAATATCGGTGTTTCGACTTATAACATTAGGATTCAGAGTTTGTGTAAGAGGAAGAAATCTAAGGAAGCGAAGGCTTTGCTTGATGGGATGTTATCTGCAGGGATGAAACCGAATACGGTAACGTATAGCCATTTGATTCACGGGTTTTGTAATGAAGATGATTTCGAGGAAGCGAAGAAGTTGTTTAAGATTATGGTGAACAGAGGATGTAAGCCTGATAGTGAGTGTTACTTCACTCTTATATATTACTTATGCAAAGGAGGAGACTTTGAGACGGCTTTGAGTCTTTGTAAAGAGAGTATGGAGAAGAATTGGGTTCCGAGTTTTAGTATCATGAAGTCGCTTGTTAACGGACTAGCTAAGGATTCGAAAGTCGAAGAAGCAAAGGAGCTTATTGGGCAAGTGAAAGAGAAGTTCACTAGAAACGTTGAGTTGTGGAACGAAGTCGAAGCCGCATTACCGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

408

Amino Acids

45.76

Weight (kDa)

8.8

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	129 - 221	4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	137 - 197	3.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	151 - 198	7.7e-08	PPR repeat family
PPR_2	PF13041	185 - 232	2.3e-09	PPR repeat family
PPR_2	PF13041	227 - 269	4.1e-06	PPR repeat family
PPR_2	PF13041	257 - 304	1.8e-13	PPR repeat family
PPR_3	PF13812	279 - 335	3.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	287 - 319	1.2e-10	PPR repeat
PPR_2	PF13041	290 - 339	3.7e-15	PPR repeat family
PPR	PF01535	293 - 323	6.4e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	570, 780
AccII	CGCG	1 cut(s)	467
AciI	CCGC	7 cut(s)	229, 252, 255, 291, 632, 1212, 1220
AclI	AACGTT	2 cut(s)	349, 1185
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	2 cut(s)	448, 620
AgsI	TTSAA	4 cut(s)	90, 111, 551, 669
AluBI	AGCT	8 cut(s)	149, 209, 386, 491, 509, 672, 1118, 1150
AluI	AGCT	8 cut(s)	149, 209, 386, 491, 509, 672, 1118, 1150
Alw26I	GTCTC	3 cut(s)	557, 1017, 1025
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	2 cut(s)	425, 560
ApeKI	GCWGC	3 cut(s)	146, 206, 356
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	2 cut(s)	22, 284
AspLEI	GCGC	1 cut(s)	469
AsuHPI	GGTGA	5 cut(s)	38, 51, 93, 463, 967
AsuII	TTCGAA	2 cut(s)	435, 1127
AvaI	CYCGRG	2 cut(s)	425, 560
BarI	GAAGNNNNNNTAC	1 cut(s)	1200
BbvI	GCAGC	3 cut(s)	158, 218, 343
BccI	CCATC	2 cut(s)	631, 836
BceAI	ACGGC	3 cut(s)	186, 242, 1050
BcgI	CGANNNNNNTGC	2 cut(s)	817, 851
BciVI	GTATCC	1 cut(s)	197
BclI	TGATCA	2 cut(s)	397, 579
BcoDI	GTCTC	3 cut(s)	557, 1017, 1025
BfaI	CTAG	2 cut(s)	1115, 1179
BfmI	CTRYAG	1 cut(s)	855
BfuI	GTATCC	1 cut(s)	197
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	6 cut(s)	147, 207, 229, 255, 357, 1212
BlsI	GCNGC	6 cut(s)	148, 208, 230, 256, 358, 1213
BmeT110I	CYCGRG	2 cut(s)	425, 560
BmiI	GGNNCC	1 cut(s)	1077
BmsI	GCATC	2 cut(s)	65, 519
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	492, 1119
Bpu14I	TTCGAA	2 cut(s)	435, 1127
BpuEI	CTTGAG	1 cut(s)	366
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	599
Bse8I	GATNNNNATC	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	3 cut(s)	852, 867, 971
BseJI	GATNNNNATC	1 cut(s)	180
BseRI	GAGGAG	4 cut(s)	70, 108, 296, 1035
BseXI	GCAGC	3 cut(s)	158, 218, 343
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	467
BsiHKCI	CYCGRG	2 cut(s)	425, 560
BsiSI	CCGG	1 cut(s)	600
BsiWI	CGTACG	1 cut(s)	446
BsmAI	GTCTC	3 cut(s)	557, 1017, 1025
BsmBI	CGTCTC	1 cut(s)	1025
BsoBI	CYCGRG	2 cut(s)	425, 560
Bsp119I	TTCGAA	2 cut(s)	435, 1127
BspACI	CCGC	7 cut(s)	229, 252, 255, 291, 632, 1212, 1220
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	1092
BspLI	GGNNCC	1 cut(s)	1077
BspMAI	CTGCAG	1 cut(s)	859
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	2 cut(s)	435, 1127
BssECI	CCNNGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	451, 877
Bst6I	CTCTTC	2 cut(s)	44, 162
BstBI	TTCGAA	2 cut(s)	435, 1127
BstDEI	CTNAG	4 cut(s)	492, 534, 819, 1119
BstF5I	GGATG	3 cut(s)	852, 867, 971
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	469
BstMAI	GTCTC	3 cut(s)	557, 1017, 1025
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 362, 1156
BstSFI	CTRYAG	1 cut(s)	855
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	158, 218, 343
BstX2I	RGATCY	2 cut(s)	175, 334
BstYI	RGATCY	2 cut(s)	175, 334
BsuI	GTATCC	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	752
BtsCI	GGATG	3 cut(s)	852, 867, 971
CciI	TCATGA	1 cut(s)	1092
CfoI	GCGC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	447, 619
CviAII	CATG	1 cut(s)	1093
CviQI	GTAC	2 cut(s)	447, 619
DdeI	CTNAG	4 cut(s)	492, 534, 819, 1119
DraI	TTTAAA	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	44, 162
EarI	CTCTTC	2 cut(s)	44, 162
EciI	GGCGGA	1 cut(s)	241
Eco88I	CYCGRG	2 cut(s)	425, 560
Esp3I	CGTCTC	1 cut(s)	1025
FaeI	CATG	1 cut(s)	1096
FatI	CATG	1 cut(s)	1092
FbaI	TGATCA	2 cut(s)	397, 579
Fnu4HI	GCNGC	6 cut(s)	147, 207, 229, 255, 357, 1212
FokI	GGATG	3 cut(s)	859, 874, 978
Fsp4HI	GCNGC	6 cut(s)	147, 207, 229, 255, 357, 1212
FspBI	CTAG	2 cut(s)	1115, 1179
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	6 cut(s)	147, 207, 229, 255, 357, 1212
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	1 cut(s)	600
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	1096
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	1108
HindII	GTYRAC	1 cut(s)	1108
HindIII	AAGCTT	1 cut(s)	670
HpaI	GTTAAC	1 cut(s)	1108
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	5 cut(s)	38, 51, 93, 463, 967
Hpy166II	GTNNAC	4 cut(s)	520, 958, 1108, 1176
Hpy188I	TCNGA	5 cut(s)	71, 169, 346, 795, 1080
Hpy8I	GTNNAC	4 cut(s)	520, 958, 1108, 1176
Hpy99I	CGWCG	3 cut(s)	263, 314, 619
HpyAV	CCTTC	1 cut(s)	823
HpyCH4III	ACNGT	2 cut(s)	451, 877
HpyCH4IV	ACGT	3 cut(s)	349, 881, 1185
HpyCH4V	TGCA	4 cut(s)	206, 701, 857, 1014
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 362, 1156
HpyF3I	CTNAG	4 cut(s)	492, 534, 819, 1119
HpySE526I	ACGT	3 cut(s)	349, 881, 1185
Hsp92II	CATG	1 cut(s)	1096
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	2 cut(s)	397, 579
KspAI	GTTAAC	1 cut(s)	1108
LmnI	GCTCC	1 cut(s)	1147
LpnPI	CCDG	9 cut(s)	117, 192, 234, 345, 567, 613, 675, 843, 987
Lsp1109I	GCAGC	3 cut(s)	158, 218, 343
LweI	GCATC	2 cut(s)	65, 519
MaeI	CTAG	2 cut(s)	1115, 1179
MaeII	ACGT	3 cut(s)	349, 881, 1185
MaeIII	GTNAC	4 cut(s)	6, 44, 877, 986
MboII	GAAGA	8 cut(s)	31, 149, 289, 823, 926, 946, 1078, 1148
MflI	RGATCY	2 cut(s)	175, 334
MluCI	AATT	3 cut(s)	431, 546, 1069
MlyI	GAGTC	1 cut(s)	1051
MroXI	GAANNNNTTC	2 cut(s)	22, 284
MseI	TTAA	5 cut(s)	407, 461, 759, 945, 1107
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	600
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	251, 362, 1156
NlaIII	CATG	1 cut(s)	1096
NlaIV	GGNNCC	1 cut(s)	1077
NmeAIII	GCCGAG	2 cut(s)	62, 298
NmuCI	GTSAC	1 cut(s)	44
NspV	TTCGAA	2 cut(s)	435, 1127
PaeR7I	CTCGAG	2 cut(s)	425, 560
PagI	TCATGA	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 432
PdmI	GAANNNNTTC	2 cut(s)	22, 284
Pfl23II	CGTACG	1 cut(s)	446
PkrI	GCNGC	6 cut(s)	148, 208, 230, 256, 358, 1213
PleI	GAGTC	1 cut(s)	1050
PpsI	GAGTC	1 cut(s)	1050
PsiI	TTATAA	2 cut(s)	570, 780
Psp1406I	AACGTT	2 cut(s)	349, 1185
PspLI	CGTACG	1 cut(s)	446
PspN4I	GGNNCC	1 cut(s)	1077
PstI	CTGCAG	1 cut(s)	859
PsuI	RGATCY	2 cut(s)	175, 334
RsaI	GTAC	2 cut(s)	448, 620
RsaNI	GTAC	2 cut(s)	447, 619
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	407, 461, 759, 945, 1107
SatI	GCNGC	6 cut(s)	147, 207, 229, 255, 357, 1212
SchI	GAGTC	1 cut(s)	1051
SfaNI	GCATC	2 cut(s)	65, 519
SfcI	CTRYAG	1 cut(s)	855
Sfr274I	CTCGAG	2 cut(s)	425, 560
SfuI	TTCGAA	2 cut(s)	435, 1127
SlaI	CTCGAG	2 cut(s)	425, 560
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	3 cut(s)	381, 425, 560
SmoI	CTYRAG	3 cut(s)	381, 425, 560
Sse9I	AATT	3 cut(s)	431, 546, 1069
SsiI	CCGC	7 cut(s)	229, 252, 255, 291, 632, 1212, 1220
SspMI	CTAG	2 cut(s)	1115, 1179
TaaI	ACNGT	2 cut(s)	451, 877
TaiI	ACGT	3 cut(s)	352, 884, 1188
TasI	AATT	3 cut(s)	431, 546, 1069
TauI	GCSGC	3 cut(s)	231, 257, 1214
Tru1I	TTAA	5 cut(s)	407, 461, 759, 945, 1107
Tru9I	TTAA	5 cut(s)	407, 461, 759, 945, 1107
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	146, 206, 356
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	7 cut(s)	15, 307, 732, 758, 878, 927, 1109
TspGWI	ACGGA	4 cut(s)	11, 32, 327, 1125
XapI	RAATTY	1 cut(s)	431
XhoI	CTCGAG	2 cut(s)	425, 560
XmnI	GAANNNNTTC	2 cut(s)	22, 284
XspI	CTAG	2 cut(s)	1115, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.