Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

1202464 .. 1204303

Gene Structure 1840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTCTCTCCTCTCCCGCCTCCGCCACTCCCTCCTCCTCCTCCACACGCGCCGCCTCTCCACCACCACCTCCAAAGACCAAACCCGCTCCCTCCTCGCCCTCCTCAAAACCGAAACAGACCCCCACAAAATCGTCTCCCTCTGCAAATCCGCCTCCCTCACCCCCGACTACTCCCAACTCCACCGCATCACCCTCTCACGCGCCGTCACCTCCCTCCGCGACTCCACCCGCCCCGACCTCATCCCCTCCATCCTCGACGATCTCCTCCTCTCCCTCAAAACGCACCGTTCCGCCTCCCACGCCATCCTCCTCTACGGCCAGGCCCGCATGCCCCACCACGCCGTCCGCACCTTCCGCCGCTGCTCCTCCGACCTCGGTATCCCCCACGACGTCGAACTCCTCAACACTCTTCTATCATCTTTGATTTCCGCCCAGGATTATCAACAAGTCACTCAAATCTACGCTGAATTTCCCAAGATTTATGAAATAGAGCCAAATCTCACCACCTACAACCACCTAATCAGGTCGTTTTCGGAGTCCGGCTCCACCGAAAATGCCTACGCCGTGCTGGAAGAGATGGAAATGAGGAAAATCAAGCCGGATGGGGACACATTCGCGCATCTCCTCGCGGGATTTTACCGCGAGGAGAGGCTGGAAGATTTCGAAAACGTGATTAATTTGATGGTTAAGTTCGGGTTCCAGCCGGGGGTGGATATCTACAATGTGAGGATAAAGAGTCTTTGCAAGATGAAGAAGTCAGGGGAGGCAGCGGCATTATTGGATGGGATGCTGGGGAGGGGTATGAAGCCGAATGTGGTAACGTTTAAACATTTGATCCGGGGGTTTAGCAAGGAGGGGAATTATGAGCAGGTCAAGAAGATGTTTGGGGATATGGTGGAGAGGGGGTTGAAGCCGGATTGTAACTGCTACTATATGCTGGTGTACTACTTGTGTTTAGGAGGGGATTTCGAGAGCGCGTTGAGGTTTGCTAAGGAGAGCATTGGGAAGGATTGGATGCCGAAATATGAGAATATGAGGGTGCTTGTGGATGGACTTGTGAGCATTGGGAAGGTGGCTGAGGCTCGGGGGCTTATCGGCCAGATGAAGGAGAAGTTTACTGTGGATCAAGATAGGTGGAGTGAAGTTGAAGAAGGCTTGCCACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

389

Amino Acids

44.15

Weight (kDa)

8.38

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	146 - 232	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	162 - 209	5.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	163 - 194	4.5e-06	PPR repeat
PPR_2	PF13041	165 - 213	1.9e-09	PPR repeat family
PPR_3	PF13812	189 - 246	6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	235 - 284	2.5e-09	PPR repeat family
PPR_3	PF13812	259 - 311	4.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	270 - 318	1.6e-10	PPR repeat family
PPR	PF01535	273 - 303	5.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	859
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
AclI	AACGTT	1 cut(s)	821
AclWI	GGATC	2 cut(s)	829, 1131
AcoI	YGGCCR	2 cut(s)	316, 1096
AcsI	RAATTY	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	944
AfiI	CCNNNNNNNGG	2 cut(s)	706, 1105
AgsI	TTSAA	2 cut(s)	910, 1148
AjnI	CCWGG	2 cut(s)	318, 432
Alw26I	GTCTC	2 cut(s)	9, 139
AlwI	GGATC	2 cut(s)	829, 1131
Ama87I	CYCGRG	1 cut(s)	1083
AoxI	GGCC	3 cut(s)	316, 321, 1096
ApeKI	GCWGC	2 cut(s)	360, 767
ApoI	RAATTY	1 cut(s)	467
AseI	ATTAAT	1 cut(s)	675
AspLEI	GCGC	4 cut(s)	51, 203, 619, 977
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	2 cut(s)	705, 839
AsuHPI	GGTGA	4 cut(s)	151, 181, 199, 493
AsuII	TTCGAA	1 cut(s)	663
AvaI	CYCGRG	1 cut(s)	1083
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	2 cut(s)	347, 779
BccI	CCATC	7 cut(s)	257, 311, 571, 596, 676, 776, 1043
BceAI	ACGGC	4 cut(s)	188, 326, 331, 548
BciT130I	CCWGG	2 cut(s)	320, 434
BciVI	GTATCC	1 cut(s)	389
BcnI	CCSGG	2 cut(s)	705, 839
BcoDI	GTCTC	2 cut(s)	9, 139
BfuAI	ACCTGC	1 cut(s)	859
BfuI	GTATCC	1 cut(s)	389
BisI	GCNGC	5 cut(s)	52, 358, 361, 768, 771
BlsI	GCNGC	5 cut(s)	53, 359, 362, 769, 772
Bme1390I	CCNGG	4 cut(s)	320, 434, 705, 839
BmeT110I	CYCGRG	1 cut(s)	1083
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	544, 698
BmrFI	CCNGG	4 cut(s)	320, 434, 705, 839
BmsI	GCATC	4 cut(s)	195, 628, 777, 1005
BplI	GAGNNNNNCTC	2 cut(s)	527, 559
Bpu10I	CCTNAGC	2 cut(s)	990, 1077
Bpu14I	TTCGAA	1 cut(s)	663
BpuMI	CCSGG	2 cut(s)	705, 839
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	4 cut(s)	373, 432, 704, 838
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 1105
BseBI	CCWGG	2 cut(s)	320, 434
BseDI	CCNNGG	4 cut(s)	373, 432, 704, 838
BseGI	GGATG	8 cut(s)	240, 249, 303, 607, 787, 792, 1020, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	706, 1105
BseMII	CTCAG	1 cut(s)	1068
BseXI	GCAGC	2 cut(s)	347, 779
BseYI	CCCAGC	1 cut(s)	790
Bsh1236I	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
BshFI	GGCC	3 cut(s)	318, 323, 1098
BsiHKCI	CYCGRG	1 cut(s)	1083
BsiSI	CCGG	5 cut(s)	540, 599, 704, 838, 914
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	706, 1105
BsmAI	GTCTC	2 cut(s)	9, 139
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	3 cut(s)	318, 323, 1098
BsoBI	CYCGRG	1 cut(s)	1083
Bsp119I	TTCGAA	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	259, 834, 1123
BspANI	GGCC	3 cut(s)	318, 323, 1098
BspCNI	CTCAG	1 cut(s)	1069
BspFNI	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
BspLI	GGNNCC	2 cut(s)	544, 698
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	2 cut(s)	829, 1131
BspT104I	TTCGAA	1 cut(s)	663
BsrBI	CCGCTC	1 cut(s)	87
BssECI	CCNNGG	4 cut(s)	373, 432, 704, 838
BssMI	GATC	3 cut(s)	259, 834, 1123
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	320, 434
Bst4CI	ACNGT	3 cut(s)	287, 1120, 1164
Bst6I	CTCTTC	2 cut(s)	414, 567
BstACI	GRCGYC	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	325, 329, 1157
BstDEI	CTNAG	2 cut(s)	990, 1077
BstF5I	GGATG	8 cut(s)	240, 249, 303, 607, 787, 792, 1020, 1054
BstFNI	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
BstHHI	GCGC	4 cut(s)	51, 203, 619, 977
BstKTI	GATC	3 cut(s)	262, 837, 1126
BstMAI	GTCTC	2 cut(s)	9, 139
BstMBI	GATC	3 cut(s)	259, 834, 1123
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 324, 354
BstNI	CCWGG	2 cut(s)	320, 434
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	318, 432, 703, 837
BstUI	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
BstV1I	GCAGC	2 cut(s)	347, 779
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	318, 323, 1098
BtsCI	GGATG	8 cut(s)	240, 249, 303, 607, 787, 792, 1020, 1054
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	3 cut(s)	325, 329, 1157
CfoI	GCGC	4 cut(s)	51, 203, 619, 977
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	943
CspCI	CAANNNNNGTGG	2 cut(s)	1115, 1150
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	943
DdeI	CTNAG	2 cut(s)	990, 1077
DpnI	GATC	3 cut(s)	261, 836, 1125
DpnII	GATC	3 cut(s)	259, 834, 1123
DraI	TTTAAA	1 cut(s)	826
EaeI	YGGCCR	2 cut(s)	316, 1096
Eam1104I	CTCTTC	2 cut(s)	414, 567
EarI	CTCTTC	2 cut(s)	414, 567
EciI	GGCGGA	5 cut(s)	11, 139, 280, 344, 418
Eco32I	GATATC	1 cut(s)	715
Eco88I	CYCGRG	1 cut(s)	1083
EcoRII	CCWGG	2 cut(s)	318, 432
EcoRV	GATATC	1 cut(s)	715
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	331
FaiI	YATR	9 cut(s)	329, 483, 803, 864, 893, 933, 935, 1026, 1034
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	1 cut(s)	327
FauI	CCCGC	5 cut(s)	23, 92, 236, 332, 622
Fnu4HI	GCNGC	5 cut(s)	52, 358, 361, 768, 771
FokI	GGATG	8 cut(s)	227, 236, 290, 614, 794, 799, 1027, 1061
Fsp4HI	GCNGC	5 cut(s)	52, 358, 361, 768, 771
GlaI	GCGC	4 cut(s)	50, 202, 618, 976
GluI	GCNGC	5 cut(s)	52, 358, 361, 768, 771
GsaI	CCCAGC	1 cut(s)	794
HaeIII	GGCC	3 cut(s)	318, 323, 1098
HapII	CCGG	5 cut(s)	540, 599, 704, 838, 914
HhaI	GCGC	4 cut(s)	51, 203, 619, 977
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	4 cut(s)	49, 201, 617, 975
HinP1I	GCGC	4 cut(s)	49, 201, 617, 975
HinfI	GANTC	3 cut(s)	221, 536, 736
HpaII	CCGG	5 cut(s)	540, 599, 704, 838, 914
HphI	GGTGA	4 cut(s)	151, 181, 199, 493
Hpy166II	GTNNAC	2 cut(s)	943, 1116
Hpy188I	TCNGA	2 cut(s)	370, 535
Hpy188III	TCNNGA	3 cut(s)	874, 970, 1127
Hpy8I	GTNNAC	2 cut(s)	943, 1116
Hpy99I	CGWCG	3 cut(s)	260, 392, 395
HpyAV	CCTTC	5 cut(s)	361, 1000, 1063, 1099, 1145
HpyCH4III	ACNGT	3 cut(s)	287, 1120, 1164
HpyCH4IV	ACGT	3 cut(s)	390, 669, 821
HpyCH4V	TGCA	2 cut(s)	144, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 324, 354
HpyF3I	CTNAG	2 cut(s)	990, 1077
HpySE526I	ACGT	3 cut(s)	390, 669, 821
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	4 cut(s)	49, 201, 617, 975
Kzo9I	GATC	3 cut(s)	259, 834, 1123
LmnI	GCTCC	3 cut(s)	92, 368, 548
Lsp1109I	GCAGC	2 cut(s)	347, 779
LweI	GCATC	4 cut(s)	195, 628, 777, 1005
MaeII	ACGT	3 cut(s)	390, 669, 821
MaeIII	GTNAC	4 cut(s)	205, 448, 817, 920
MalI	GATC	3 cut(s)	261, 836, 1125
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	3 cut(s)	259, 834, 1123
MboII	GAAGA	6 cut(s)	401, 584, 668, 763, 889, 1160
MluCI	AATT	3 cut(s)	467, 676, 859
MlyI	GAGTC	3 cut(s)	215, 545, 745
MmeI	TCCRAC	1 cut(s)	393
MseI	TTAA	3 cut(s)	675, 687, 825
MspA1I	CMGCKG	2 cut(s)	360, 770
MspI	CCGG	5 cut(s)	540, 599, 704, 838, 914
MspR9I	CCNGG	4 cut(s)	320, 434, 705, 839
MssI	GTTTAAAC	1 cut(s)	826
MvaI	CCWGG	2 cut(s)	320, 434
MvnI	CGCG	7 cut(s)	49, 201, 219, 617, 629, 642, 977
MwoI	GCNNNNNNNGC	3 cut(s)	299, 324, 354
NciI	CCSGG	2 cut(s)	705, 839
NdeII	GATC	3 cut(s)	259, 834, 1123
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	544, 698
NmuCI	GTSAC	2 cut(s)	205, 448
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	663
PaeI	GCATGC	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	53, 359, 362, 769, 772
PleI	GAGTC	3 cut(s)	215, 544, 744
PmeI	GTTTAAAC	1 cut(s)	826
PpsI	GAGTC	3 cut(s)	215, 544, 744
PshBI	ATTAAT	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	821
Psp6I	CCWGG	2 cut(s)	318, 432
PspFI	CCCAGC	1 cut(s)	790
PspGI	CCWGG	2 cut(s)	318, 432
PspN4I	GGNNCC	2 cut(s)	544, 698
PspPI	GGNCC	1 cut(s)	322
RsaI	GTAC	1 cut(s)	944
RsaNI	GTAC	1 cut(s)	943
SaqAI	TTAA	3 cut(s)	675, 687, 825
SatI	GCNGC	5 cut(s)	52, 358, 361, 768, 771
Sau3AI	GATC	3 cut(s)	259, 834, 1123
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	3 cut(s)	215, 545, 745
ScrFI	CCNGG	4 cut(s)	320, 434, 705, 839
SfaNI	GCATC	4 cut(s)	195, 628, 777, 1005
SfuI	TTCGAA	1 cut(s)	663
SphI	GCATGC	1 cut(s)	331
Sse9I	AATT	3 cut(s)	467, 676, 859
StyD4I	CCNGG	4 cut(s)	318, 432, 703, 837
TaaI	ACNGT	3 cut(s)	287, 1120, 1164
TaiI	ACGT	3 cut(s)	393, 672, 824
TaqI	TCGA	4 cut(s)	255, 393, 663, 969
TasI	AATT	3 cut(s)	467, 676, 859
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	3 cut(s)	54, 360, 773
Tru1I	TTAA	3 cut(s)	675, 687, 825
Tru9I	TTAA	3 cut(s)	675, 687, 825
TseFI	GTSAC	2 cut(s)	205, 448
TseI	GCWGC	2 cut(s)	360, 767
Tsp45I	GTSAC	2 cut(s)	205, 448
TspDTI	ATGAA	4 cut(s)	498, 764, 818, 1118
VspI	ATTAAT	1 cut(s)	675
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	331
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.