Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Reverse (-)

31075472 .. 31076641

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g31280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGTCTCTTCTATCTCGCCTTCGCCACGCCCGCCACCTCTCCACGGCGGCCCCACTGTCCTCCAAGGACAAAACCAGAACCGCCATCGCCCAACTCAAGTCCGAGAAAGACCCCTCCAAAATCCTTGAAATCTGCAAATCCGCCTCCCTAACCCCCGAATCCCACCTCGATCGCATCGCCTTCTCCGTCGCCATCAACCGCCTCCGCGACGACAACCACTACGACTTCATCCGCCAGTTCCTCGACGACCTCTTCACCTCCCGGCCCGACCTCAAAACGCAGCGCTTCGCCTCCCACGCCATCATCCTCTACGGCCAGGCCGACATGCCCGACCACGCCGTCCGCATCTTTGAGCGCTGCGAGGAATTGGGCATCCCTCGGAACGTCAAGACGCTCAATGCGTTGCTGCTCGCCTGTATATTCGCCAGGAATTACAAGGAGGTGAACCGGGTTTTTCTCGAATTCCCGAAGATTTACGGGATCCAGCCCGATTTGGAGACTTACAATTACTTTAAATTGACGATCAAGGCGTTCTCGGAGGCGGGCACCACCAGCTCCTCCTACTCGGTGCTGGCGGAGATGGAGAGGAAGAATGTGAAGCCGGATGCCAACACTTTCGGGCATTTGCTCACCGGGTTTTACACCGAAATGAAGTTTGAAGACGTTGGGAAGGTGATGAATTTGATGGAGAAGCACGGGTTTCAGCCCGGCCTTTCCACTTACAACATTAGGATCAAGAGTTTGTGTAAACTGAGGAAGTCTGCCGAGGCAAAAGCGTTGCTGGATGGGATGCTTTCGAGGGGGATGAAGCCGAATGCAGTCACATTTTGCCATCTGATTCATGGGTTTTGCAAGGAAGGGAACTTGGACGAGGCGAAGAAGATGTTCACCAACATGGTGAACCGCGGATTTAAGGCAGATGCGAACTGCTACTTCACTCTCGTGTATTTCCTGTGCAAAGGTGGGGAGTTTGAGAGTGCATTGCAGTTTGCGAAGGAGAGCATTGAGAAGAATTGGGTTCCCAATTTCGGAACCATGAAGTTGCTCGTGGACGGACTGGTGAAGGTTTCGAAGGTGGCGGAGGCTAGGGAGGTTATCGGGCAGATGAAGGAGAAGTTTTCGGTGAATCAAGATCAGTGGAATGAAGTTGAAGCTGCATTGCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

390

Amino Acids

44.22

Weight (kDa)

8.99

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	115 - 170	7.3e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	189 - 246	2.1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	205 - 250	8.7e-07	PPR repeat family
PPR_2	PF13041	236 - 285	1.1e-11	PPR repeat family
PPR_1	PF12854	267 - 300	4.1e-13	PPR repeat
PPR_2	PF13041	271 - 320	3.1e-11	PPR repeat family
PPR	PF01535	274 - 304	2.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	545
AccII	CGCG	2 cut(s)	207, 906
AclWI	GGATC	3 cut(s)	475, 488, 740
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	461, 679
AfeI	AGCGCT	2 cut(s)	284, 356
AfiI	CCNNNNNNNGG	2 cut(s)	43, 1028
AgsI	TTSAA	3 cut(s)	128, 659, 1151
AjnI	CCWGG	2 cut(s)	315, 425
AleI	CACNNNNGTG	1 cut(s)	941
AluBI	AGCT	2 cut(s)	555, 1154
AluI	AGCT	2 cut(s)	555, 1154
Alw26I	GTCTC	2 cut(s)	9, 491
AlwI	GGATC	3 cut(s)	475, 488, 740
Aor51HI	AGCGCT	2 cut(s)	284, 356
AoxI	GGCC	5 cut(s)	48, 263, 313, 318, 709
ApeKI	GCWGC	4 cut(s)	280, 357, 406, 1154
ApoI	RAATTY	2 cut(s)	461, 679
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	2 cut(s)	285, 357
AspS9I	GGNCC	2 cut(s)	49, 264
AsuC2I	CCSGG	4 cut(s)	262, 449, 634, 708
AsuHPI	GGTGA	8 cut(s)	247, 454, 622, 685, 880, 910, 1072, 1135
AsuII	TTCGAA	1 cut(s)	1070
BaeGI	GKGCMC	1 cut(s)	548
BamHI	GGATCC	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	545
BauI	CACGAG	2 cut(s)	941, 1046
BbsI	GAAGAC	1 cut(s)	666
BbvI	GCAGC	4 cut(s)	292, 344, 393, 1141
BccI	CCATC	7 cut(s)	92, 200, 308, 574, 679, 779, 840
BceAI	ACGGC	3 cut(s)	60, 323, 328
BciT130I	CCWGG	2 cut(s)	317, 427
BcnI	CCSGG	4 cut(s)	262, 449, 634, 708
BcoDI	GTCTC	2 cut(s)	9, 491
BfaI	CTAG	1 cut(s)	1086
BfoI	RGCGCY	2 cut(s)	286, 358
BisI	GCNGC	6 cut(s)	48, 281, 358, 407, 1155, 1163
BlsI	GCNGC	6 cut(s)	49, 282, 359, 408, 1156, 1164
Bme1390I	CCNGG	6 cut(s)	262, 317, 427, 449, 634, 708
BmgT120I	GGNCC	2 cut(s)	49, 264
BmiI	GGNNCC	5 cut(s)	51, 482, 547, 1020, 1033
BmrFI	CCNGG	6 cut(s)	262, 317, 427, 449, 634, 708
BmsI	GCATC	6 cut(s)	183, 354, 381, 595, 780, 910
BpiI	GAAGAC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	1070
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	4 cut(s)	262, 449, 634, 708
BsaJI	CCNNGG	5 cut(s)	42, 63, 377, 765, 904
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 1028
Bse1I	ACTGG	2 cut(s)	235, 1062
Bse3DI	GCAATG	2 cut(s)	980, 1157
BseBI	CCWGG	2 cut(s)	317, 427
BseDI	CCNNGG	5 cut(s)	42, 63, 377, 765, 904
BseGI	GGATG	7 cut(s)	228, 303, 372, 610, 790, 795, 810
BseLI	CCNNNNNNNGG	2 cut(s)	43, 1028
BseMI	GCAATG	2 cut(s)	980, 1157
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	2 cut(s)	235, 1062
BseRI	GAGGAG	1 cut(s)	547
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	4 cut(s)	292, 344, 393, 1141
Bsh1236I	CGCG	2 cut(s)	207, 906
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	5 cut(s)	50, 265, 315, 320, 711
BshNI	GGYRCC	1 cut(s)	545
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	5 cut(s)	262, 448, 602, 633, 708
BslI	CCNNNNNNNGG	2 cut(s)	43, 1028
BsmAI	GTCTC	2 cut(s)	9, 491
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	5 cut(s)	50, 265, 315, 320, 711
Bsp119I	TTCGAA	1 cut(s)	1070
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	169, 480, 522, 732, 1132
BspANI	GGCC	5 cut(s)	50, 265, 315, 320, 711
BspCNI	CTCAG	1 cut(s)	744
BspFNI	CGCG	2 cut(s)	207, 906
BspLI	GGNNCC	5 cut(s)	51, 482, 547, 1020, 1033
BspPI	GGATC	3 cut(s)	475, 488, 740
BspT104I	TTCGAA	1 cut(s)	1070
BspT107I	GGYRCC	1 cut(s)	545
BsrDI	GCAATG	2 cut(s)	980, 1157
BsrI	ACTGG	2 cut(s)	235, 1062
BssECI	CCNNGG	5 cut(s)	42, 63, 377, 765, 904
BssMI	GATC	5 cut(s)	169, 480, 522, 732, 1132
BssSI	CACGAG	2 cut(s)	941, 1046
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	2 cut(s)	941, 1046
Bst2UI	CCWGG	2 cut(s)	317, 427
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	2 cut(s)	12, 257
BstBI	TTCGAA	1 cut(s)	1070
BstC8I	GCNNGC	4 cut(s)	31, 411, 544, 573
BstDEI	CTNAG	1 cut(s)	752
BstDSI	CCRYGG	2 cut(s)	42, 904
BstF5I	GGATG	7 cut(s)	228, 303, 372, 610, 790, 795, 810
BstFNI	CGCG	2 cut(s)	207, 906
BstH2I	RGCGCY	2 cut(s)	286, 358
BstHHI	GCGC	2 cut(s)	285, 357
BstKTI	GATC	5 cut(s)	172, 483, 525, 735, 1135
BstMAI	GTCTC	2 cut(s)	9, 491
BstMBI	GATC	5 cut(s)	169, 480, 522, 732, 1132
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 296, 552
BstNI	CCWGG	2 cut(s)	317, 427
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	6 cut(s)	260, 315, 425, 447, 632, 706
BstSLI	GKGCMC	1 cut(s)	548
BstUI	CGCG	2 cut(s)	207, 906
BstV1I	GCAGC	4 cut(s)	292, 344, 393, 1141
BstV2I	GAAGAC	1 cut(s)	666
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	5 cut(s)	50, 265, 315, 320, 711
BtgI	CCRYGG	2 cut(s)	42, 904
BtgZI	GCGATG	2 cut(s)	70, 160
BtsCI	GGATG	7 cut(s)	228, 303, 372, 610, 790, 795, 810
BtsIMutI	CAGTG	2 cut(s)	53, 1142
Cac8I	GCNNGC	4 cut(s)	31, 411, 544, 573
CfoI	GCGC	2 cut(s)	285, 357
Cfr13I	GGNCC	2 cut(s)	49, 264
Cfr42I	CCGCGG	1 cut(s)	907
CseI	GACGC	1 cut(s)	400
CspCI	CAANNNNNGTGG	2 cut(s)	1118, 1153
CviAII	CATG	4 cut(s)	325, 842, 895, 1036
DdeI	CTNAG	1 cut(s)	752
DpnI	GATC	5 cut(s)	171, 482, 524, 734, 1134
DpnII	GATC	5 cut(s)	169, 480, 522, 732, 1132
DraI	TTTAAA	1 cut(s)	514
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	12, 257
EarI	CTCTTC	2 cut(s)	12, 257
EciI	GGCGGA	4 cut(s)	130, 221, 590, 1094
Eco130I	CCWWGG	1 cut(s)	63
Eco47III	AGCGCT	2 cut(s)	284, 356
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	315, 425
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	4 cut(s)	328, 845, 898, 1039
FaiI	YATR	5 cut(s)	326, 419, 843, 896, 1037
FatI	CATG	4 cut(s)	324, 841, 894, 1035
FauI	CCCGC	2 cut(s)	38, 535
Fnu4HI	GCNGC	6 cut(s)	48, 281, 358, 407, 1155, 1163
FokI	GGATG	7 cut(s)	215, 290, 359, 617, 797, 802, 817
Fsp4HI	GCNGC	6 cut(s)	48, 281, 358, 407, 1155, 1163
FspBI	CTAG	1 cut(s)	1086
GlaI	GCGC	2 cut(s)	284, 356
GluI	GCNGC	6 cut(s)	48, 281, 358, 407, 1155, 1163
HaeII	RGCGCY	2 cut(s)	286, 358
HaeIII	GGCC	5 cut(s)	50, 265, 315, 320, 711
HapII	CCGG	5 cut(s)	262, 448, 602, 633, 708
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	2 cut(s)	285, 357
Hin1II	CATG	4 cut(s)	328, 845, 898, 1039
Hin6I	GCGC	2 cut(s)	283, 355
HinP1I	GCGC	2 cut(s)	283, 355
HinfI	GANTC	3 cut(s)	158, 838, 1126
HpaII	CCGG	5 cut(s)	262, 448, 602, 633, 708
HphI	GGTGA	8 cut(s)	247, 454, 622, 685, 880, 910, 1072, 1135
Hpy166II	GTNNAC	5 cut(s)	445, 749, 888, 901, 1051
Hpy188I	TCNGA	5 cut(s)	103, 381, 538, 837, 1031
Hpy188III	TCNNGA	5 cut(s)	388, 458, 466, 736, 1130
Hpy8I	GTNNAC	5 cut(s)	445, 749, 888, 901, 1051
Hpy99I	CGWCG	3 cut(s)	191, 212, 248
HpyAV	CCTTC	8 cut(s)	29, 190, 664, 851, 988, 1057, 1066, 1102
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	384, 663
HpyCH4V	TGCA	7 cut(s)	135, 818, 852, 957, 980, 985, 1157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 296, 552
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	2 cut(s)	384, 663
Hsp92II	CATG	4 cut(s)	328, 845, 898, 1039
HspAI	GCGC	2 cut(s)	283, 355
KspI	CCGCGG	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	169, 480, 522, 732, 1132
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	4 cut(s)	292, 344, 393, 1141
LweI	GCATC	6 cut(s)	183, 354, 381, 595, 780, 910
MaeI	CTAG	1 cut(s)	1086
MaeII	ACGT	2 cut(s)	384, 663
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	5 cut(s)	171, 482, 524, 734, 1134
MboI	GATC	5 cut(s)	169, 480, 522, 732, 1132
MboII	GAAGA	7 cut(s)	244, 481, 601, 671, 889, 892, 1021
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	8 cut(s)	365, 430, 461, 505, 515, 679, 1012, 1024
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	2 cut(s)	513, 912
MslI	CAYNNNNRTG	3 cut(s)	647, 893, 941
MspA1I	CMGCKG	1 cut(s)	906
MspI	CCGG	5 cut(s)	262, 448, 602, 633, 708
MspR9I	CCNGG	6 cut(s)	262, 317, 427, 449, 634, 708
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	2 cut(s)	317, 427
MvnI	CGCG	2 cut(s)	207, 906
MwoI	GCNNNNNNNGC	3 cut(s)	30, 296, 552
NciI	CCSGG	4 cut(s)	262, 449, 634, 708
NdeII	GATC	5 cut(s)	169, 480, 522, 732, 1132
NlaIII	CATG	4 cut(s)	328, 845, 898, 1039
NlaIV	GGNNCC	5 cut(s)	51, 482, 547, 1020, 1033
NmeAIII	GCCGAG	1 cut(s)	790
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	1 cut(s)	328
NspV	TTCGAA	1 cut(s)	1070
OliI	CACNNNNGTG	1 cut(s)	941
PcsI	WCGNNNNNNNCGW	4 cut(s)	183, 318, 398, 527
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	158, 838, 1126
PkrI	GCNGC	6 cut(s)	49, 282, 359, 408, 1156, 1164
Ple19I	CGATCG	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	315, 425
PspGI	CCWGG	2 cut(s)	315, 425
PspN4I	GGNNCC	5 cut(s)	51, 482, 547, 1020, 1033
PspPI	GGNCC	2 cut(s)	49, 264
PsuI	RGATCY	1 cut(s)	480
PvuI	CGATCG	1 cut(s)	172
RseI	CAYNNNNRTG	3 cut(s)	647, 893, 941
SacII	CCGCGG	1 cut(s)	907
SaqAI	TTAA	2 cut(s)	513, 912
SatI	GCNGC	6 cut(s)	48, 281, 358, 407, 1155, 1163
Sau3AI	GATC	5 cut(s)	169, 480, 522, 732, 1132
Sau96I	GGNCC	2 cut(s)	49, 264
ScrFI	CCNGG	6 cut(s)	262, 317, 427, 449, 634, 708
SduI	GDGCHC	1 cut(s)	548
SfaNI	GCATC	6 cut(s)	183, 354, 381, 595, 780, 910
Sfr303I	CCGCGG	1 cut(s)	907
SfuI	TTCGAA	1 cut(s)	1070
SgrBI	CCGCGG	1 cut(s)	907
SmiMI	CAYNNNNRTG	3 cut(s)	647, 893, 941
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	8 cut(s)	365, 430, 461, 505, 515, 679, 1012, 1024
SspMI	CTAG	1 cut(s)	1086
StyD4I	CCNGG	6 cut(s)	260, 315, 425, 447, 632, 706
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	387, 666
TaqI	TCGA	5 cut(s)	168, 243, 459, 797, 1070
TasI	AATT	8 cut(s)	365, 430, 461, 505, 515, 679, 1012, 1024
TauI	GCSGC	2 cut(s)	50, 1165
TfiI	GAWTC	3 cut(s)	158, 838, 1126
Tru1I	TTAA	2 cut(s)	513, 912
Tru9I	TTAA	2 cut(s)	513, 912
TscAI	CASTG	2 cut(s)	60, 1142
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	4 cut(s)	280, 357, 406, 1154
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	8 cut(s)	217, 665, 692, 821, 830, 1052, 1121, 1158
TspGWI	ACGGA	2 cut(s)	175, 1068
TspRI	CASTG	2 cut(s)	60, 1142
XapI	RAATTY	2 cut(s)	461, 679
XceI	RCATGY	1 cut(s)	328
XcmI	CCANNNNNNNNNTGG	1 cut(s)	839
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	1 cut(s)	1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.