Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003948.1

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Forward (+)

23202 .. 23609

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003948.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggaggccgaggcattgttggatgggatgttagggaggggtatcaagccgaatgcggtcacgttttgccatttgattctcgggttttgcaaggaggggaatttggagcaagggaagaagatgtttgagaagatggtggagagggggtttgctaaggagagcatggagaagaattgggtgccgaattttgctacgatgaggttgcttgtggatggacttgtgagcattgggaaggtggctgaggctcgccagcttatcggccagatgaaggagaagttcactgtgaatcaacataggtggagtgaagttgaagaaggcttgccacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

109

Amino Acids

12.33

Weight (kDa)

6.74

Isoelectric Point (pI)

28.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	2 cut(s)	100, 184
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	2 cut(s)	6, 259
ApoI	RAATTY	2 cut(s)	100, 184
AvaI	CYCGRG	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	240
BccI	CCATC	3 cut(s)	17, 127, 206
BcgI	CGANNNNNNTGC	2 cut(s)	184, 218
BmeT110I	CYCGRG	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	180
Bpu10I	CCTNAGC	2 cut(s)	153, 240
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	3 cut(s)	28, 33, 217
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	8, 261
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	8, 261
BsoBI	CYCGRG	1 cut(s)	80
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	8, 261
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	9
Bst4CI	ACNGT	2 cut(s)	283, 327
BstC8I	GCNNGC	3 cut(s)	247, 251, 320
BstDEI	CTNAG	2 cut(s)	153, 240
BstF5I	GGATG	3 cut(s)	28, 33, 217
BsuRI	GGCC	2 cut(s)	8, 261
BtsCI	GGATG	3 cut(s)	28, 33, 217
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	3 cut(s)	247, 251, 320
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	7 cut(s)	8, 49, 239, 245, 253, 261, 318
CviKI_1	RGCY	7 cut(s)	8, 49, 239, 245, 253, 261, 318
DdeI	CTNAG	2 cut(s)	153, 240
EaeI	YGGCCR	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	80
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 294
FatI	CATG	1 cut(s)	162
FokI	GGATG	3 cut(s)	35, 40, 224
HaeIII	GGCC	2 cut(s)	8, 261
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	2 cut(s)	76, 286
Hpy166II	GTNNAC	1 cut(s)	279
Hpy8I	GTNNAC	1 cut(s)	279
HpyAV	CCTTC	3 cut(s)	226, 262, 308
HpyCH4III	ACNGT	2 cut(s)	283, 327
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	153, 240
HpySE526I	ACGT	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	263, 275
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	5 cut(s)	127, 130, 142, 181, 323
MluCI	AATT	3 cut(s)	100, 172, 184
MnlI	CCTC	6 cut(s)	4, 30, 88, 135, 192, 235
Mva1269I	GAATGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	180
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	58
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	76, 286
PspN4I	GGNNCC	1 cut(s)	180
SetI	ASST	5 cut(s)	65, 203, 237, 255, 299
Sse9I	AATT	3 cut(s)	100, 172, 184
SsiI	CCGC	1 cut(s)	56
TaaI	ACNGT	2 cut(s)	283, 327
TaiI	ACGT	1 cut(s)	65
TasI	AATT	3 cut(s)	100, 172, 184
TfiI	GAWTC	2 cut(s)	76, 286
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	286
XapI	RAATTY	2 cut(s)	100, 184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.