Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006304

Physical Location & Seq

Genomic Coordinates Reverse (-)

46345962 .. 46347140

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1343300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGTCTCTTCTATCTCGCCTTCGCCACGCCGCCCTCACCCCCCACGCCCGCCACCTCTCCACGGCGGCCCCACTCTCCTCCAAGGACAAAACTAGAACCGCCATCGCCCTCCTCAAATCCGAGAAAGACCCCTCCAGAATCCTCGAAATCTGCAAATCCGCCTCCCTAACCCCCGAATCCCACCTCGATCGCATCGCCTTCTCCGTCGCCATCAACCGCCTGCGCGACGACAACCACTACGACTTCATCCGCCAGTTCCTCGACGACCTCTTCGCCTCCCGGCCCGACCTCAAAACGCAGCGCTTCGCCTCCCACGCCATCATCCTCTACGGTCAGGCCGACATGCCCGACCACGCCGTCCGCACCTTTGAGCGCTGCGAGGAATTGGGCATCCCTCGGAACGTCAAGACGCTCAATGCGTTGCTGCTCGCCTGTATATTCGCCAGGAATTACAAGGAGGTGAACCGGGTTTTTCTCGAATTCCCGAAGATTTACAGGATCCAGCCCGATTTGGAGACTTACAATTACGTGATCAAGGCGTTATCGGAGGCGGGCACCACCAGCTCCTCCTACTCGGTGCTGGCGGAGATGGAGAGGAAGAATGTGAAGCCGGATGCCGACACTTTCGGGCATTTGCTCACCGGGTTTTACACCGAAATGAAGTTTGAAGACGTTGGGAAGGTGATGAATTTGATGGAGAAGCACGGGTTTCAGCCCGGACTTTCCACTTACAACATTAGGATCAAGAGTTTGTGCAAATTGAGGAAGTCTGGCGAGGCAAAAGCGTTGCTGGATGGGATGCTTTCGAGGGGGATGAAGCCGAATGCAGTCACATTTTGCCATCTGATTCATGGGTTTTGCAAGGAAGGGAACTTGGACGAGGCGAAGAAGACGTTCACCAACATGGTGAACCGCGGATTTAAGGCAGATGCCAACTGCTACTTCACTCTTGTGTATTTCCTGTGCAAAGGTGGGGAGTTTGAGAGTGCATTGCAGTTTGCCAAGGAGAGCATTGAGCAGAATTGGGTTCCCAATTTTGGAACCATGAAGTTGCTCGTGGACGGACTGGTGAAGGTTTCGAAGGTGGCGGAGGCAAGGGAGGTTATCGGGCAGATGAAGGAGAAGTTTTCGGTGAATCAAGATCGGTGGAATGAAGTTGAAGCTGCATTGCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

393

Amino Acids

44.44

Weight (kDa)

8.93

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	123 - 181	1.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	169 - 216	2.9e-08	PPR repeat family
PPR_3	PF13812	192 - 249	3.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	211 - 253	2.3e-06	PPR repeat family
PPR_2	PF13041	239 - 288	1.6e-11	PPR repeat family
PPR_1	PF12854	270 - 303	5.5e-12	PPR repeat
PPR_2	PF13041	277 - 323	3.6e-09	PPR repeat family
PPR	PF01535	277 - 307	2.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11630 AT1G61870
fragaria_vesca	FvH4_3g02370 FvH4_3g02370
malus_domestica	MD05G1343300.v1.1 MD10G1318400.v1.1
prunus_persica	Prupe.1G264600_v2.0.a1 Prupe.4G023500_v2.0.a1
pyrus_communis	pycom05g31280 pycom10g26970
rosa_chinensis	RchiOBHm_Chr4g0403291 RchiOBHm_Chr5g0003601
rosa_laevigata	RLG00000031155
rosa_multiflora	Rmu_sc0001904.1_g000005 Rmu_sc0003948.1_g000005 Rmu_sc0004279.1_g000002 Rmu_sc0015897.1_g000005 Rmu_sc0028363.1_g000002
rosa_roxburghii	Rroxscaffold_1G00072370
rosa_rugosa	Rorug04G0404900 Rorug05G0111800
rosa_samantha	Rh4BG209100 Rh5AG031800 Rh5BG030600 Rh5CG034500 Rh5DG031300
rosa_wichuraiana	Rw5G002960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	554
AccII	CGCG	2 cut(s)	225, 915
AclWI	GGATC	3 cut(s)	493, 506, 749
AcsI	RAATTY	2 cut(s)	479, 688
AfeI	AGCGCT	2 cut(s)	302, 374
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1037
AgsI	TTSAA	2 cut(s)	668, 1160
AjnI	CCWGG	1 cut(s)	443
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AleI	CACNNNNGTG	1 cut(s)	950
AluBI	AGCT	2 cut(s)	564, 1163
AluI	AGCT	2 cut(s)	564, 1163
Alw26I	GTCTC	2 cut(s)	9, 509
AlwI	GGATC	3 cut(s)	493, 506, 749
Aor51HI	AGCGCT	2 cut(s)	302, 374
AoxI	GGCC	3 cut(s)	66, 281, 336
ApeKI	GCWGC	4 cut(s)	298, 375, 424, 1163
ApoI	RAATTY	2 cut(s)	479, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	893
AspLEI	GCGC	3 cut(s)	225, 303, 375
AspS9I	GGNCC	2 cut(s)	67, 282
AsuC2I	CCSGG	4 cut(s)	280, 467, 643, 717
AsuHPI	GGTGA	8 cut(s)	28, 472, 631, 694, 889, 919, 1081, 1144
AsuII	TTCGAA	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	554
BauI	CACGAG	1 cut(s)	1055
BbsI	GAAGAC	2 cut(s)	675, 896
BbvI	GCAGC	4 cut(s)	310, 362, 411, 1150
BccI	CCATC	7 cut(s)	110, 218, 326, 583, 688, 788, 849
BceAI	ACGGC	2 cut(s)	78, 341
BciT130I	CCWGG	1 cut(s)	445
BclI	TGATCA	1 cut(s)	531
BcnI	CCSGG	4 cut(s)	280, 467, 643, 717
BcoDI	GTCTC	2 cut(s)	9, 509
BfaI	CTAG	1 cut(s)	93
BfoI	RGCGCY	2 cut(s)	304, 376
BisI	GCNGC	7 cut(s)	30, 66, 299, 376, 425, 1164, 1172
BlsI	GCNGC	7 cut(s)	31, 67, 300, 377, 426, 1165, 1173
Bme1390I	CCNGG	5 cut(s)	280, 445, 467, 643, 717
BmgT120I	GGNCC	2 cut(s)	67, 282
BmiI	GGNNCC	5 cut(s)	69, 500, 556, 1029, 1042
BmrFI	CCNGG	5 cut(s)	280, 445, 467, 643, 717
BmsI	GCATC	5 cut(s)	201, 399, 604, 789, 919
BpiI	GAAGAC	2 cut(s)	675, 896
BpmI	CTGGAG	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	1079
BpuMI	CCSGG	4 cut(s)	280, 467, 643, 717
BsaAI	YACGTR	1 cut(s)	529
BsaJI	CCNNGG	5 cut(s)	60, 81, 395, 913, 1002
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1037
Bse1I	ACTGG	2 cut(s)	253, 1071
Bse3DI	GCAATG	2 cut(s)	989, 1166
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	5 cut(s)	60, 81, 395, 913, 1002
BseGI	GGATG	7 cut(s)	246, 321, 390, 619, 799, 804, 819
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1037
BseMI	GCAATG	2 cut(s)	989, 1166
BseNI	ACTGG	2 cut(s)	253, 1071
BseRI	GAGGAG	3 cut(s)	67, 101, 556
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	4 cut(s)	310, 362, 411, 1150
Bsh1236I	CGCG	2 cut(s)	225, 915
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	3 cut(s)	68, 283, 338
BshNI	GGYRCC	1 cut(s)	554
BsiEI	CGRYCG	1 cut(s)	190
BsiSI	CCGG	5 cut(s)	280, 466, 611, 642, 717
BslI	CCNNNNNNNGG	2 cut(s)	61, 1037
BsmAI	GTCTC	2 cut(s)	9, 509
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	3 cut(s)	68, 283, 338
Bsp119I	TTCGAA	1 cut(s)	1079
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	5 cut(s)	187, 498, 531, 741, 1141
BspANI	GGCC	3 cut(s)	68, 283, 338
BspFNI	CGCG	2 cut(s)	225, 915
BspLI	GGNNCC	5 cut(s)	69, 500, 556, 1029, 1042
BspPI	GGATC	3 cut(s)	493, 506, 749
BspT104I	TTCGAA	1 cut(s)	1079
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	989, 1166
BsrI	ACTGG	2 cut(s)	253, 1071
BssECI	CCNNGG	5 cut(s)	60, 81, 395, 913, 1002
BssMI	GATC	5 cut(s)	187, 498, 531, 741, 1141
BssSI	CACGAG	1 cut(s)	1055
BssT1I	CCWWGG	2 cut(s)	81, 1002
Bst2BI	CACGAG	1 cut(s)	1055
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	2 cut(s)	12, 275
BstBAI	YACGTR	1 cut(s)	529
BstBI	TTCGAA	1 cut(s)	1079
BstC8I	GCNNGC	5 cut(s)	49, 221, 429, 553, 582
BstDSI	CCRYGG	2 cut(s)	60, 913
BstF5I	GGATG	7 cut(s)	246, 321, 390, 619, 799, 804, 819
BstFNI	CGCG	2 cut(s)	225, 915
BstH2I	RGCGCY	2 cut(s)	304, 376
BstHHI	GCGC	3 cut(s)	225, 303, 375
BstKTI	GATC	5 cut(s)	190, 501, 534, 744, 1144
BstMAI	GTCTC	2 cut(s)	9, 509
BstMBI	GATC	5 cut(s)	187, 498, 531, 741, 1141
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 561
BstNI	CCWGG	1 cut(s)	445
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	5 cut(s)	278, 443, 465, 641, 715
BstSLI	GKGCMC	1 cut(s)	557
BstUI	CGCG	2 cut(s)	225, 915
BstV1I	GCAGC	4 cut(s)	310, 362, 411, 1150
BstV2I	GAAGAC	2 cut(s)	675, 896
BstX2I	RGATCY	1 cut(s)	498
BstYI	RGATCY	1 cut(s)	498
BsuRI	GGCC	3 cut(s)	68, 283, 338
BtgI	CCRYGG	2 cut(s)	60, 913
BtgZI	GCGATG	2 cut(s)	88, 178
BtsCI	GGATG	7 cut(s)	246, 321, 390, 619, 799, 804, 819
Cac8I	GCNNGC	5 cut(s)	49, 221, 429, 553, 582
CfoI	GCGC	3 cut(s)	225, 303, 375
Cfr13I	GGNCC	2 cut(s)	67, 282
Cfr42I	CCGCGG	1 cut(s)	916
CseI	GACGC	1 cut(s)	418
CspCI	CAANNNNNGTGG	2 cut(s)	1127, 1162
CviAII	CATG	4 cut(s)	343, 851, 904, 1045
CviJI	RGCY	9 cut(s)	68, 283, 338, 505, 564, 610, 715, 820, 1163
CviKI_1	RGCY	9 cut(s)	68, 283, 338, 505, 564, 610, 715, 820, 1163
DpnI	GATC	5 cut(s)	189, 500, 533, 743, 1143
DpnII	GATC	5 cut(s)	187, 498, 531, 741, 1141
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
Eam1104I	CTCTTC	2 cut(s)	12, 275
EarI	CTCTTC	2 cut(s)	12, 275
EciI	GGCGGA	4 cut(s)	148, 239, 599, 1103
Eco130I	CCWWGG	2 cut(s)	81, 1002
Eco47III	AGCGCT	2 cut(s)	302, 374
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	81, 1002
ErhI	CCWWGG	2 cut(s)	81, 1002
FaeI	CATG	4 cut(s)	346, 854, 907, 1048
FaiI	YATR	5 cut(s)	344, 437, 852, 905, 1046
FatI	CATG	4 cut(s)	342, 850, 903, 1044
FauI	CCCGC	2 cut(s)	56, 544
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	7 cut(s)	30, 66, 299, 376, 425, 1164, 1172
FokI	GGATG	7 cut(s)	233, 308, 377, 626, 806, 811, 826
Fsp4HI	GCNGC	7 cut(s)	30, 66, 299, 376, 425, 1164, 1172
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	3 cut(s)	224, 302, 374
GluI	GCNGC	7 cut(s)	30, 66, 299, 376, 425, 1164, 1172
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	2 cut(s)	304, 376
HaeIII	GGCC	3 cut(s)	68, 283, 338
HapII	CCGG	5 cut(s)	280, 466, 611, 642, 717
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	3 cut(s)	225, 303, 375
Hin1II	CATG	4 cut(s)	346, 854, 907, 1048
Hin6I	GCGC	3 cut(s)	223, 301, 373
HinP1I	GCGC	3 cut(s)	223, 301, 373
HinfI	GANTC	4 cut(s)	138, 176, 847, 1135
HpaII	CCGG	5 cut(s)	280, 466, 611, 642, 717
HphI	GGTGA	8 cut(s)	28, 472, 631, 694, 889, 919, 1081, 1144
Hpy166II	GTNNAC	4 cut(s)	463, 897, 910, 1060
Hpy188I	TCNGA	4 cut(s)	121, 399, 547, 846
Hpy188III	TCNNGA	6 cut(s)	135, 406, 476, 484, 745, 1139
Hpy8I	GTNNAC	4 cut(s)	463, 897, 910, 1060
Hpy99I	CGWCG	3 cut(s)	209, 230, 266
HpyAV	CCTTC	7 cut(s)	29, 208, 673, 860, 1066, 1075, 1111
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	4 cut(s)	402, 528, 672, 893
HpyCH4V	TGCA	8 cut(s)	153, 756, 827, 861, 966, 989, 994, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 561
HpySE526I	ACGT	4 cut(s)	402, 528, 672, 893
Hsp92II	CATG	4 cut(s)	346, 854, 907, 1048
HspAI	GCGC	3 cut(s)	223, 301, 373
Ksp22I	TGATCA	1 cut(s)	531
KspI	CCGCGG	1 cut(s)	916
Kzo9I	GATC	5 cut(s)	187, 498, 531, 741, 1141
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	4 cut(s)	310, 362, 411, 1150
LweI	GCATC	5 cut(s)	201, 399, 604, 789, 919
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	4 cut(s)	402, 528, 672, 893
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	5 cut(s)	189, 500, 533, 743, 1143
MboI	GATC	5 cut(s)	187, 498, 531, 741, 1141
MboII	GAAGA	6 cut(s)	262, 499, 610, 680, 898, 901
MflI	RGATCY	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	8 cut(s)	383, 448, 479, 523, 688, 758, 1021, 1033
MroXI	GAANNNNTTC	1 cut(s)	893
MseI	TTAA	1 cut(s)	921
MslI	CAYNNNNRTG	3 cut(s)	656, 902, 950
MspA1I	CMGCKG	1 cut(s)	915
MspI	CCGG	5 cut(s)	280, 466, 611, 642, 717
MspR9I	CCNGG	5 cut(s)	280, 445, 467, 643, 717
Mva1269I	GAATGC	1 cut(s)	829
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	2 cut(s)	225, 915
MwoI	GCNNNNNNNGC	2 cut(s)	314, 561
NciI	CCSGG	4 cut(s)	280, 467, 643, 717
NdeII	GATC	5 cut(s)	187, 498, 531, 741, 1141
NlaIII	CATG	4 cut(s)	346, 854, 907, 1048
NlaIV	GGNNCC	5 cut(s)	69, 500, 556, 1029, 1042
NmuCI	GTSAC	1 cut(s)	829
NspI	RCATGY	1 cut(s)	346
NspV	TTCGAA	1 cut(s)	1079
OliI	CACNNNNGTG	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 336, 416
PctI	GAATGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	4 cut(s)	138, 176, 847, 1135
PkrI	GCNGC	7 cut(s)	31, 67, 300, 377, 426, 1165, 1173
Ple19I	CGATCG	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	5 cut(s)	69, 500, 556, 1029, 1042
PspPI	GGNCC	2 cut(s)	67, 282
PsuI	RGATCY	1 cut(s)	498
PvuI	CGATCG	1 cut(s)	190
RseI	CAYNNNNRTG	3 cut(s)	656, 902, 950
SacII	CCGCGG	1 cut(s)	916
SaqAI	TTAA	1 cut(s)	921
SatI	GCNGC	7 cut(s)	30, 66, 299, 376, 425, 1164, 1172
Sau3AI	GATC	5 cut(s)	187, 498, 531, 741, 1141
Sau96I	GGNCC	2 cut(s)	67, 282
ScrFI	CCNGG	5 cut(s)	280, 445, 467, 643, 717
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	5 cut(s)	201, 399, 604, 789, 919
Sfr303I	CCGCGG	1 cut(s)	916
SfuI	TTCGAA	1 cut(s)	1079
SgrBI	CCGCGG	1 cut(s)	916
SmiMI	CAYNNNNRTG	3 cut(s)	656, 902, 950
Sse9I	AATT	8 cut(s)	383, 448, 479, 523, 688, 758, 1021, 1033
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	5 cut(s)	278, 443, 465, 641, 715
StyI	CCWWGG	2 cut(s)	81, 1002
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	4 cut(s)	405, 531, 675, 896
TaqI	TCGA	6 cut(s)	144, 186, 261, 477, 806, 1079
TasI	AATT	8 cut(s)	383, 448, 479, 523, 688, 758, 1021, 1033
TauI	GCSGC	3 cut(s)	32, 68, 1174
TfiI	GAWTC	4 cut(s)	138, 176, 847, 1135
Tru1I	TTAA	1 cut(s)	921
Tru9I	TTAA	1 cut(s)	921
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	4 cut(s)	298, 375, 424, 1163
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	8 cut(s)	235, 674, 701, 830, 839, 1061, 1130, 1167
TspGWI	ACGGA	2 cut(s)	193, 1077
XapI	RAATTY	2 cut(s)	479, 688
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.